def test_overlapping_unnormalizations_for_proteins_on_accept_entity_uniprot_go_taxonomy():
# Must always be false if gold is known but not the prediction
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|0,1|n_7|UNKNOWN:")
# Gold UNKNOWN AND overlapping --> None
assert None is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|UNKNOWN:",
"e_1|0,1|n_7|P08100")
# Gold UNKNOWN AND overlapping --> None
assert None is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|UNKNOWN:aaa",
"e_1|0,1|n_7|UNKNOWN:bbb")
# One gold is known and matches the prediction --> True
assert True is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|UNKNOWN:,P08100",
"e_1|0,1|n_7|P08100")
# One gold is known and does not match the prediction --> False
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|UNKNOWN:,P08100",
"e_1|0,1|n_7|xxx")
def test_nonoverlapping_unnormalizations_for_proteins_on_accept_entity_uniprot_go_taxonomy():
# Gold UNKNOWN BUT NO overlapping --> False
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|UNKNOWN:",
"e_1|1,2|n_7|P08100")
# Gold UNKNOWN BUT NO overlapping --> False
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|UNKNOWN:",
"e_1|1,2|n_7|UNKNOWN:")
def test_overlapping_cases_for_proteins_on_accept_entity_uniprot_go_taxonomy():
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|1,2|n_7|P08100")
assert True is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|0,1|n_7|P08100")
assert True is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|0,2|n_7|P08100")
def test_seq_identity_for_proteins_on_accept_entity_uniprot_go_taxonomy():
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|0,1|n_7|P02699")
assert True is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|0,1|n_7|P02699",
min_seq_identity=90)
assert True is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P02699",
"e_1|0,1|n_7|P08100",
min_seq_identity=90)
assert False is accept_entity_uniprot_go_taxonomy(
"e_1|0,1|n_7|P08100",
"e_1|0,1|n_7|P02699",
min_seq_identity=95)
def accept_checking_sequence_identity(gold, pred):
return accept_entity_uniprot_go_taxonomy(gold,
pred,
min_seq_identity=90)