def test_get_pipeline_name_inferred(self):
""" Script implies pipeline name if it's not explicitly configured. """
pipeline_names = ["wgbs", "atacseq"]
for extensions in itertools.combinations(EXTENSIONS, 2):
pipelines = [
name + ext for name, ext in zip(pipeline_names, extensions)
]
pi_config_data = {pipeline: None for pipeline in pipelines}
with mock.patch("looper.models.PipelineInterface._expand_paths"):
pi = PipelineInterface(pi_config_data)
for expected_name, pipeline in zip(pipeline_names, pipelines):
assert expected_name == pi.get_pipeline_name(pipeline)
def test_get_pipeline_name_explicit(self, name_and_ext_pairs):
""" Configuration can directly specify pipeline name. """
names, extensions = zip(*name_and_ext_pairs)
pipelines = [name + ext for name, ext in name_and_ext_pairs]
pi_conf_data = {
pipeline: {
"name": name
}
for pipeline, name in zip(pipelines, names)
}
pi = PipelineInterface(pi_conf_data)
for pipeline, expected_name in zip(pipelines, names):
assert expected_name == pi.get_pipeline_name(pipeline)