def setUp(self):
self.x0, self.y0 = 0, 0
self.nx, self.ny = 512, 512 #2048, 4096
self.sky = 100.0
self.nObj = 100
# make a distorter
# This is a lot of distortion ... from circle r=1, to ellipse with a=1.3 (ie. 30%)
# For suprimecam, we expect only about 5%
self.distCoeffs = [0.0, 1.0, 2.0e-04, 3.0e-8]
lanczosOrder = 3
coefficientsDistort = True
self.distorter = cameraGeom.RadialPolyDistortion(self.distCoeffs, coefficientsDistort, lanczosOrder)
# make a detector
self.detector = cameraUtils.makeDefaultCcd(afwGeom.Box2I(afwGeom.Point2I(0,0),
afwGeom.Extent2I(self.nx, self.ny)))
self.detector.setDistortion(self.distorter)
self.detector.setCenter(cameraGeom.FpPoint(255.5, 255.5)) # move boresight from center to 0,0
if False:
for x,y in [(0,0), (0, 511), (511,0), (511, 511)]:
p = afwGeom.Point2D(x, y)
iqq = self.distorter.distort(p, geomEllip.Quadrupole(), self.detector)
print x, y, geomEllip.Axes(iqq)
print self.detector.getPositionFromPixel(p).getMm()
print "Max distortion on this detector: ", self.distorter.computeMaxShear(self.detector)
# detection policies
self.detConfig = measAlg.SourceDetectionConfig()
# Cannot use default background approximation order (6) for such a small image.
self.detConfig.background.approxOrder = 4
# measurement policies
self.measSrcConfig = measAlg.SourceMeasurementConfig()
# psf star selector
starSelectorFactory = measAlg.starSelectorRegistry["secondMoment"]
starSelectorConfig = starSelectorFactory.ConfigClass()
starSelectorConfig.fluxLim = 5000.0
starSelectorConfig.histSize = 32
starSelectorConfig.clumpNSigma = 1.0
starSelectorConfig.badFlags = []
self.starSelector = starSelectorFactory(starSelectorConfig)
# psf determiner
psfDeterminerFactory = measAlg.psfDeterminerRegistry["pca"]
psfDeterminerConfig = psfDeterminerFactory.ConfigClass()
width, height = self.nx, self.ny
nEigenComponents = 3
psfDeterminerConfig.sizeCellX = width//3
psfDeterminerConfig.sizeCellY = height//3
psfDeterminerConfig.nEigenComponents = nEigenComponents
psfDeterminerConfig.spatialOrder = 1
psfDeterminerConfig.kernelSizeMin = 31
psfDeterminerConfig.nStarPerCell = 0
psfDeterminerConfig.nStarPerCellSpatialFit = 0 # unlimited
self.psfDeterminer = psfDeterminerFactory(psfDeterminerConfig)
def skyMapToCamera(self, dataIds):
"""Make a minimal camera based on the skymap; ONLY DESIGNED TO WORK WITH 1 TRACT (sorry, future developer)"""
tracts = set(x["tract"] for x in dataIds)
assert(len(tracts) == 1)
self.tract = tracts.pop()
cols = set([x["patch"][0] for x in dataIds]) # x
rows = set([x["patch"][1] for x in dataIds]) # y
col0 = min(cols)
row0 = min(rows)
ncols = max(cols) - col0 + 1
nrows = max(rows) - row0 + 1
origBBox = afwGeom.Box2I()
raftId = cameraGeom.Id(0, str(self.tract))
raft = cameraGeom.Raft(raftId, ncols, nrows)
for nId, dataId in enumerate(dataIds):
patch = self.skyMap[self.tract].getPatchInfo(dataId["patch"])
detId = cameraGeom.Id(nId, "%d-%d,%d" % (self.tract, patch.getIndex()[0], patch.getIndex()[1]))
bbox = patch.getInnerBBox() # outer bbox overlaps, inner doesn't
origBBox.include(bbox) # capture the full extent of the skymap
bbox.shift(-afwGeom.Extent2I(bbox.getBegin())) # need the bbox to be w.r.t. the raft coord system; i.e. 0
ccd = cameraGeomUtils.makeDefaultCcd(bbox, detId=detId)
col = patch.getIndex()[0] - col0
row = patch.getIndex()[1] - row0
xc = bbox.getBeginX() + 0.5 * bbox.getWidth()
yc = bbox.getBeginY() + 0.5 * bbox.getHeight()
raft.addDetector(afwGeom.Point2I(col, row),
cameraGeom.FpPoint(afwGeom.Point2D(xc, yc)),
cameraGeom.Orientation(),
ccd)
raftBbox = raft.getAllPixels()
xc = origBBox.getBeginX() + 0.5 * origBBox.getWidth()
yc = origBBox.getBeginY() + 0.5 * origBBox.getHeight()
cameraId = cameraGeom.Id(0, "Skymap")
camera = cameraGeom.Camera(cameraId, 1, 1)
camera.addDetector(afwGeom.Point2I(0, 0),
cameraGeom.FpPoint(afwGeom.Point2D(xc, yc)),
cameraGeom.Orientation(), raft)
self.camera = camera
# Now, redo the assignments in __init__
for r in self.camera:
raft = cameraGeom.cast_Raft(r)
raftName = raft.getId().getName().strip()
self.detectors[raftName] = raft
self.rafts[raftName] = raft
for c in raft:
ccd = cameraGeom.cast_Ccd(c)
ccdName = ccd.getId().getName().strip()
self.detectors[ccdName] = ccd
self.sensors[ccdName] = ccd
self.nSensor += 1
self.raftCcdKeys.append([raftName, ccdName])
def setUp(self):
self.prynt = False
nx, ny = 6001, 8001
pixelSize = 1.0 # mm
allPixels = afwGeom.BoxI(afwGeom.PointI(0, 0), afwGeom.ExtentI(nx, ny))
self.det = cameraGeomUtils.makeDefaultCcd(allPixels, pixelSize=pixelSize)
self.det.setCenter(cameraGeom.FpPoint(int(0.5*nx), int(0.5*ny)))
# try the suprimecam numbers
self.coeffs = [0.0, 1.0, 7.16417e-08, 3.03146e-10, 5.69338e-14, -6.61572e-18]
self.xs = [0.0, 1000.0, 5000.0]
self.ys = [0.0, 1000.0, 4000.0]
def setUp(self):
self.prynt = False
nx, ny = 6001, 8001
pixelSize = 1.0 # mm
allPixels = afwGeom.BoxI(afwGeom.PointI(0, 0), afwGeom.ExtentI(nx, ny))
self.det = cameraGeomUtils.makeDefaultCcd(allPixels,
pixelSize=pixelSize)
self.det.setCenter(cameraGeom.FpPoint(int(0.5 * nx), int(0.5 * ny)))
# try the suprimecam numbers
self.coeffs = [
0.0, 1.0, 7.16417e-08, 3.03146e-10, 5.69338e-14, -6.61572e-18
]
self.xs = [0.0, 1000.0, 5000.0]
self.ys = [0.0, 1000.0, 4000.0]
def setUp(self):
self.x0, self.y0 = 0, 0
self.nx, self.ny = 512, 512 #2048, 4096
self.sky = 100.0
self.nObj = 100
# make a distorter
# This is a lot of distortion ... from circle r=1, to ellipse with a=1.3 (ie. 30%)
# For suprimecam, we expect only about 5%
self.distCoeffs = [0.0, 1.0, 2.0e-04, 3.0e-8]
lanczosOrder = 3
coefficientsDistort = True
self.distorter = cameraGeom.RadialPolyDistortion(
self.distCoeffs, coefficientsDistort, lanczosOrder)
# make a detector
self.detector = cameraUtils.makeDefaultCcd(
afwGeom.Box2I(afwGeom.Point2I(0, 0),
afwGeom.Extent2I(self.nx, self.ny)))
self.detector.setDistortion(self.distorter)
self.detector.setCenter(cameraGeom.FpPoint(
255.5, 255.5)) # move boresight from center to 0,0
if False:
for x, y in [(0, 0), (0, 511), (511, 0), (511, 511)]:
p = afwGeom.Point2D(x, y)
iqq = self.distorter.distort(p, geomEllip.Quadrupole(),
self.detector)
print x, y, geomEllip.Axes(iqq)
print self.detector.getPositionFromPixel(p).getMm()
print "Max distortion on this detector: ", self.distorter.computeMaxShear(
self.detector)
# detection policies
self.detConfig = measAlg.SourceDetectionConfig()
# measurement policies
self.measSrcConfig = measAlg.SourceMeasurementConfig()
# psf star selector
starSelectorFactory = measAlg.starSelectorRegistry["secondMoment"]
starSelectorConfig = starSelectorFactory.ConfigClass()
starSelectorConfig.fluxLim = 5000.0
starSelectorConfig.histSize = 32
starSelectorConfig.clumpNSigma = 1.0
starSelectorConfig.badFlags = []
self.starSelector = starSelectorFactory(starSelectorConfig)
# psf determiner
psfDeterminerFactory = measAlg.psfDeterminerRegistry["pca"]
psfDeterminerConfig = psfDeterminerFactory.ConfigClass()
width, height = self.nx, self.ny
nEigenComponents = 3
psfDeterminerConfig.sizeCellX = width // 3
psfDeterminerConfig.sizeCellY = height // 3
psfDeterminerConfig.nEigenComponents = nEigenComponents
psfDeterminerConfig.spatialOrder = 1
psfDeterminerConfig.kernelSizeMin = 31
psfDeterminerConfig.nStarPerCell = 0
psfDeterminerConfig.nStarPerCellSpatialFit = 0 # unlimited
self.psfDeterminer = psfDeterminerFactory(psfDeterminerConfig)
def testPsfDistortion(self):
#distorter = cameraGeom.NullDistortion() #self.sCamDistorter #Exag
distorter = self.sCamDistorter
# set the psf
kwid = 55
psfSigma = 4.5
psf = afwDet.createPsf("DoubleGaussian", kwid, kwid, psfSigma, psfSigma, 0.0)
# create a detector which is offset from the boresight
pixelSize = 0.01 # mm
allPixels = afwGeom.BoxI(afwGeom.PointI(0, 0), afwGeom.ExtentI(self.nx, self.ny))
detector = cameraUtils.makeDefaultCcd(allPixels, pixelSize=pixelSize)
detector.setCenterPixel(afwGeom.Point2D(self.nx/2, self.ny/2))
# try the upper right corner of chip 0 on suprimecam
cenPixX, cenPixY = 5000.0, 4000.0
detector.setCenter(cameraGeom.FpPoint(cenPixX*pixelSize, cenPixY*pixelSize))
detector.setDistortion(distorter)
psf.setDetector(detector)
settings = {'scale': 'minmax', 'zoom':"to fit", 'mask':'transparency 80'}
# use a point in the middle of the test image
x = self.nx//2
y = self.ny//2
p = afwGeom.Point2D(x,y) # this is our **measured** coordinate
pOrig = distorter.undistort(p, detector) # this is where p would be without optical distortion
########################################################
# check that the camera behaves as expected
pos = detector.getPositionFromPixel(p)
pix = detector.getPixelFromPosition(pos)
print "posmm, pospix, pix", pos.getMm(), pos.getPixels(detector.getPixelSize()), pix
posPix = pos.getPixels(detector.getPixelSize())
# note that p is in the center of the ccd
self.assertEqual(posPix.getX(), cenPixX)
self.assertEqual(posPix.getY(), cenPixY)
self.assertEqual(pix.getX(), x)
self.assertEqual(pix.getY(), y)
########################################################
# compare the measured shear in a psf image to the expected value
# get the expected shear at p
q = distorter.distort(pOrig, geomEllip.Quadrupole(), detector)
ax = geomEllip.Axes(q)
aKnown = ax.getA()
bKnown = ax.getB()
thetaKnown = ax.getTheta()*180.0/math.pi
print "Shear at p: ", ax, thetaKnown
# make a plain PSF
doDistort = False # the default is True
psfImg = psf.computeImage(p, True, doDistort)
# compute a PSF at p
psfImgDistInternally = psf.computeImage(p)
# make a plain one and distort it ourselves
# --> note that we use the undistorted pOrig ... that's where p was before the optics
#psfImgOrig = psf.computeImage(pOrig, True, doDistort)
#psfImgDistByUs = distorter.distort(pOrig, psfImgOrig, detector, 0.0)
#shift = p - afwGeom.Extent2D(pOrig)
#afwMath.offsetImage(psfImgDistByUs, shift.getX(), shift.getY(), "lanczos5", 5)
psfImgDistByUs = distorter.distort(p, psfImg, detector, 0.0)
# to display, we'll trim off the edge of the original so it's the same size as the distorted.
wid2 = psfImgDistInternally.getWidth()
edge = (psfImg.getWidth() - wid2)/2
box = afwGeom.Box2I(afwGeom.Point2I(edge, edge), afwGeom.Extent2I(wid2,wid2))
if display:
ds9.mtv(afwImage.ImageD(psfImg, box), frame=1, title="psf", settings=settings)
ds9.mtv(psfImgDistInternally, frame=2, title="psfDist", settings=settings)
ds9.mtv(afwImage.ImageD(psfImgDistByUs, box), frame=3, title="psfDist2", settings=settings)
# first make sure we can plant a known quantity and measure it
# quickAndDirtyShape() must be tested to be used itself as a tester
sigma = 1.0
img = plantEllipse(kwid, kwid, sigma, sigma, 0.0)
a, b, theta, ixx, iyy, ixy = quickAndDirtyShape(img, afwGeom.Point2D(kwid/2,kwid/2))
print "planted:", a/sigma, b/sigma, theta, ixx/sigma**2, iyy/sigma**2, ixy/sigma**2
prec = 6
self.assertAlmostEqual(a, sigma, prec)
self.assertAlmostEqual(b, sigma, prec)
self.assertAlmostEqual(ixx, sigma**2, prec)
self.assertAlmostEqual(iyy, sigma**2, prec)
# try 4% shear along theta=45
shear = 1.04
q = geomEllip.Quadrupole(geomEllip.Axes(shear*sigma, sigma, math.pi/4.0))
img = plantEllipse(kwid, kwid, q.getIxx(), q.getIyy(), q.getIxy())
a, b, theta, ixx, iyy, ixy = quickAndDirtyShape(img, afwGeom.Point2D(kwid/2,kwid/2))
print "sheared 4%:", a/sigma, b/sigma, theta, ixx/sigma**2, iyy/sigma**2, ixy/sigma**2
self.assertAlmostEqual(a, shear*sigma, prec)
self.assertAlmostEqual(b, sigma, prec)
self.assertAlmostEqual(theta, 45.0, prec)
# now use quickAndDirty to measure the PSFs we created
a, b, theta, ixx, iyy, ixy = quickAndDirtyShape(psfImg, p)
print "psfImg:", a/psfSigma, b/psfSigma, theta, ixx/psfSigma**2, iyy/psfSigma**2, ixy/psfSigma**2
self.assertAlmostEqual(a, psfSigma, prec)
self.assertAlmostEqual(b, psfSigma, prec)
print "known Theta = ", thetaKnown
a, b, theta, ixx, iyy, ixy = quickAndDirtyShape(psfImgDistInternally, p)
print "warpIntern:", a/psfSigma, b/psfSigma, theta, ixx/psfSigma**2, iyy/psfSigma**2, ixy/psfSigma**2
self.assertTrue(abs(a/psfSigma - aKnown) < 0.01)
self.assertTrue(abs(b/psfSigma - bKnown) < 0.01)
self.assertTrue(abs(theta - thetaKnown) < 0.5) # half a degree
a, b, theta, ixx, iyy, ixy = quickAndDirtyShape(psfImgDistByUs, p)
print "warpExtern:", a/psfSigma, b/psfSigma, theta, ixx/psfSigma**2, iyy/psfSigma**2, ixy/psfSigma**2
self.assertTrue(abs(a/psfSigma - aKnown) < 0.01)
self.assertTrue(abs(b/psfSigma - bKnown) < 0.01)
self.assertTrue(abs(theta - thetaKnown) < 0.5)