def set_first_figure_current(self):
# only do this if we have any figures at all
# If we don't, we don't want to create one as that sets the size of the
# window and then figures sizes are ignored by subsequent runs of the script
if len(matplotlib.pyplot.get_fignums()) == 0:
return
identifier = 1
fig = self._figure(identifier)
if fig not in self.figs.values():
self.figs[identifier] = fig
elif identifier not in self.__allocated_figures:
# handle case where we are swapping from all identified figures
# to the first not being explicitly identified through a call to figure()
# AND we already had a figure with the identifier of "1" which is what we use
# for the default figure
if identifier in self.figs and self.figs[identifier] != fig:
j = identifier
while j in self.figs:
j += 1
self.figs[j] = self.figs[identifier]
msg = """Warning: detected collision of matplotlib figure identifiers.
Plot output may not be as expected.
Re-run the analysis script to (hopefully) resolve the collision.
To permanently fix this, please ensure you call figure() prior
to other matplotlib plotting functions.
"""
sys.stderr.write(lyse.dedent(msg))
self.figs[identifier] = fig
self.__allocated_figures.append(identifier)
self._remove_dead_references(identifier, fig)
def new_figure(self, fig, identifier):
try:
# Get custom class for this plot if it is registered
cls = lyse.get_plot_class(identifier)
# If no plot was registered, use the base class
if cls is None: cls = Plot
# if cls is not a subclass of Plot, then raise an Exception
if not issubclass(cls, Plot):
raise RuntimeError(
'The specified class must be a subclass of lyse.Plot')
# Instantiate the plot
self.plots[fig] = cls(fig, identifier, self.filepath)
except Exception:
traceback_lines = traceback.format_exception(*sys.exc_info())
del traceback_lines[1]
# Avoiding a list comprehension here so as to avoid this
# python bug in earlier versions of 2.7 (fixed in 2.7.9):
# https://bugs.python.org/issue21591
message = """Failed to instantiate custom class for plot "{identifier}".
Perhaps lyse.register_plot_class() was called incorrectly from your
script? The exception raised was:
""".format(identifier=identifier)
message = lyse.dedent(message)
for line in traceback_lines:
if PY2:
# errors='replace' is for Windows filenames present in the
# traceback that are not UTF8. They will not display
# correctly, but that's the best we can do - the traceback
# may contain code from the file in a different encoding,
# so we could have a mixed encoding string. This is only
# a problem for Python 2.
line = line.decode('utf8', errors='replace')
message += line
message += '\n'
message += 'Due to this error, we used the default lyse.Plot class instead.\n'
sys.stderr.write(message)
# instantiate plot using original Base class so that we always get a plot
self.plots[fig] = Plot(fig, identifier, self.filepath)
return self.plots[fig]