def test_model_conf(self):
self.parsed_args.models_dir = self.find_data('models')
self.parsed_args.models = "Model_w_conf all"
cfg = Config(self.defaults, self.parsed_args)
expected_weights = {
'mandatory': 13.0,
'accessory': 14.0,
'neutral': 0.0,
'itself': 11.0,
'exchangeable': 12.0,
'out_of_cluster': 10.0
}
self.assertDictEqual(cfg.hit_weights(), expected_weights)
self.assertEqual(cfg.i_evalue_sel(), 0.012)
self.assertEqual(cfg.e_value_search(), 0.12)
self.assertEqual(cfg.coverage_profile(), 0.55)
self.assertTrue(cfg.no_cut_ga())
def test_no_cut_ga(self):
cfg = Config(self.defaults, self.parsed_args)
self.assertFalse(cfg.no_cut_ga())
self.parsed_args.no_cut_ga = True
cfg = Config(self.defaults, self.parsed_args)
self.assertTrue(cfg.no_cut_ga())
