def test_add_mandatory_gene(self):
system = System("foo", self.cfg, 10)
gene = Gene(self.cfg, 'sctJ_FLG', system, self.profile_registry)
system.add_mandatory_gene(gene)
self.assertEqual(system._mandatory_genes, [gene])
self.assertEqual(system._accessory_genes, [])
self.assertEqual(system._forbidden_genes, [])
def test_add_mandatory_gene(self):
system = System("foo", self.cfg, 10)
gene = Gene(self.cfg, 'sctJ_FLG', system, self.profile_registry)
system.add_mandatory_gene(gene)
self.assertEqual(system._mandatory_genes, [gene])
self.assertEqual(system._accessory_genes, [])
self.assertEqual(system._forbidden_genes, [])
def test_min_mandatory_genes_required(self):
name = 'foo'
min_mandatory_genes_required = 40
system = System(self.cfg, name, 10, min_mandatory_genes_required = min_mandatory_genes_required)
gene = Gene(self.cfg, 'sctJ_FLG', system, self.profile_registry)
system.add_mandatory_gene( gene )
self.assertEqual(system.min_mandatory_genes_required, min_mandatory_genes_required)
#see https://projets.pasteur.fr/issues/1850
system = System(self.cfg, name, 10)
self.assertEqual(system.min_mandatory_genes_required, len(system.mandatory_genes))
def test_min_genes_required(self):
name = 'foo'
min_genes_required = 40
system = System(self.cfg,
name,
10,
min_genes_required=min_genes_required)
gene = Gene(self.cfg, 'sctJ_FLG', system, self.profile_registry)
system.add_mandatory_gene(gene)
self.assertEqual(system.min_genes_required, min_genes_required)
#see https://projets.pasteur.fr/issues/1850
system = System(self.cfg, name, 10)
self.assertEqual(system.min_genes_required,
len(system.mandatory_genes))
def test_mandatory_genes(self):
system = System(self.cfg, "foo", 10)
gene = Gene(self.cfg, 'sctJ_FLG', system, self.profile_registry)
system.add_mandatory_gene(gene)
self.assertEqual(system.mandatory_genes, [gene])
def test_mandatory_genes(self):
system = System(self.cfg, "foo", 10)
gene = Gene(self.cfg, 'sctJ_FLG', system, self.profile_registry)
system.add_mandatory_gene(gene)
self.assertEqual(system.mandatory_genes, [gene])
