def test_large_results_to_outputs(self):
msg = ' '.join(map(str, range(DEFINED_ACTION_OUTPUTS_NUMBER + 1)))
results = to_outputs(split(msg))
assert results['length'] == '100'
assert results['_99'] == '99 100'
def test_to_outputs(self):
results = to_outputs(split('/release split v1'))
expected = {
'length': '3',
'_0': '/release',
'_1': 'split',
'_2': 'v1',
}
assert results == expected
def test(self):
self.assertEqual(main.split([1, 2, 3, 4, 5], 0), [[], [1, 2, 3, 4, 5]])
self.assertEqual(main.split([1, 2, 3, 4, 5], 1), [[1], [2, 3, 4, 5]])
self.assertEqual(main.split([1, 2, 3, 4, 5], 2), [[1, 2], [3, 4, 5]])
self.assertEqual(main.split([1, 2, 3, 4, 5], 3), [[1, 2, 3], [4, 5]])
self.assertEqual(main.split([1, 2, 3, 4, 5], 4), [[1, 2, 3, 4], [5]])
self.assertEqual(main.split([1, 2, 3, 4, 5], 5), [[1, 2, 3, 4, 5], []])
def optimize_regularization(data):
c_best, f1_best = 0, 0
data_train, data_test = main.split(data, 0.5)
for d in range(-10, 10):
c = 2 ** d
theta = train(data_train, c=c)
res = testing(data_test, theta)
f1_cur = res['f1']
print("Current c: %.5f" % c)
if f1_best < f1_cur:
c_best, f1_best = c, f1_cur
print("Now best F1: %.5f" % f1_best)
return c_best
def optimize_regularization(data):
lymbda_best, f1_best = 0, 0
data_train, data_test = main.split(data, 0.5)
for d in range(-7, 10):
lymbda = 2**d
theta = train(data_train, lymbda=lymbda)
res = testing(data_test, theta)
f1_cur = res['f1']
print("Current lymbda: %.5f" % lymbda)
if f1_best < f1_cur:
lymbda_best, f1_best = lymbda, f1_cur
print("Now best F1: %.5f" % f1_best)
return lymbda_best
def respell(data, dictionary): trie = Trie() split_data = split(data) for row in split_data: for word in row: if word in dictionary: trie.insert(word) for row in split_data: # correct single words for word in row: if word not in dictionary: corrected = trie.nearest_neighbor(word).next()
def optimize_regularization(data):
lymbda_best, f1_best = 0, 0
data_train, data_test = main.split(data, 0.5)
for d in range(-7, 10):
lymbda = 2 ** d
theta = train(data_train, lymbda=lymbda)
res = testing(data_test, theta)
f1_cur = res['f1']
print("Current lymbda: %.5f" % lymbda)
if f1_best < f1_cur:
lymbda_best, f1_best = lymbda, f1_cur
print("Now best F1: %.5f" % f1_best)
return lymbda_best
def respell(data, dictionary):
trie = Trie()
split_data = split(data)
for row in split_data:
for word in row:
if word in dictionary:
trie.insert(word)
for row in split_data:
# correct single words
for word in row:
if word not in dictionary:
corrected = trie.nearest_neighbor(word).next()
def test_maxsplit_is_not_numeric(self):
with pytest.raises(TypeError):
split('must fail', maxsplit='a')
with pytest.raises(TypeError):
split('must fail', maxsplit=None)
def test_maxsplit_with_long_string(self, length, maxsplit, expected):
msg = ' '.join(map(str, range(length)))
results = split(msg, maxsplit=maxsplit)
assert results[-1] == expected
def test_maxsplit(self, msg, maxsplit, expected):
assert split(msg, maxsplit=maxsplit) == expected
def test_empty_seperator(self):
with pytest.raises(ValueError):
split('must fail', sep='')
def test_seperator(self, msg, sep, expected):
assert split(msg, sep=sep) == expected
def train_and_visualize(num_hidden,
dropout,
*args,
training_steps=10,
batch_size=93,
**kwargs):
# full = kwargs['full']
# vocab_dict = kwargs['vocab_dict']
# embedding_matrix = kwargs['embedding_matrix']
tf.reset_default_graph() #resets graph
# full, vocab_dict, embedding_matrix = segment('train.csv','train_p.csv',size=embed_size)
# Network Parameters
num_input = 1
time_step = full.data.shape[1]
num_classes = 2
# tf Graph input
X = tf.placeholder(tf.int32, [None, time_step])
X_length = tf.placeholder(tf.int32, [None])
#embedding = tf.Variable(embedding_matrix)
Y = tf.placeholder(tf.float16, [None, num_classes])
# Define weights
weights = {'out': tf.Variable(tf.random_normal([num_hidden, num_classes]))}
biases = {'out': tf.Variable(tf.random_normal([num_classes]))}
def RNN(x, x_length, weights, biases):
"""x: rank-1, x_length: rank-0, weights: rank-2, biases: rank-1
rtype: rank-1"""
batch_size_tmp = tf.shape(x)[0]
embedding = tf.get_variable('embedding', [len(vocab_dict), embed_size])
embed = [
tf.nn.embedding_lookup(embedding, row)
for row in tf.split(x, batch_size)
]
embed = tf.reshape(embed, (batch_size_tmp, time_step, embed_size))
embed = tf.unstack(embed, time_step, 1)
lstm_cell = rnn.BasicLSTMCell(num_hidden)
cell = tf.contrib.rnn.DropoutWrapper(lstm_cell,
output_keep_prob=dropout)
cell = rnn.MultiRNNCell([cell] * 1)
# pdb.set_trace()
outputs, states = rnn.static_rnn(cell,
dtype=tf.float32,
sequence_length=x_length,
inputs=embed)
# print(states)
outputs = tf.stack(outputs)
outputs = tf.transpose(outputs, [1, 0, 2])
index = tf.range(0, batch_size_tmp) * \
full.data.shape[1] + tf.reshape(x_length - 1, [batch_size_tmp])
outputs = tf.gather(tf.reshape(outputs, [-1, num_hidden]), index)
return tf.matmul(outputs,
weights['out']) + biases['out'], states, embed
logits, states, embed = RNN(X, X_length, weights, biases)
prediction = tf.nn.softmax(logits)
# tf.summary.histogram('logits', logits)
loss_op = tf.reduce_mean(
tf.nn.softmax_cross_entropy_with_logits(logits=logits, labels=Y))
optimizer = tf.train.AdamOptimizer()
train_op = optimizer.minimize(loss_op)
# tf.summary.scalar('loss', loss_op)
correct_pred = tf.equal(tf.argmax(prediction, 1), tf.argmax(Y, 1))
accuracy = tf.reduce_mean(tf.cast(correct_pred, tf.float32))
# tf.summary.scalar('accuracy', accuracy)
init = tf.global_variables_initializer()
# merged_summary = tf.summary.merge_all()
# states_summary=tf.summary.tensor_summary(states_node ,states)
# # Start training
# config = tf.ConfigProto()
# config.gpu_options.allow_growth = True
fold = 7 #choose validation batch
# with tf.Session(config=config) as sess:
with tf.Session() as sess:
sess.run(init)
train, validation = split(full, fold)
previous_valid_acc = 0
for step in range(1, training_steps + 1):
for i in range(1,
train.data.shape[0] // batch_size + 1): #stochastic
batch = train.sample(batch_size)
batch_x = batch.data
batch_y = batch.target
batch_x_length = batch.length
batch_x_length = batch_x_length.reshape((-1))
# pdb.set_trace()
# summary, _,states = sess.run([merged_summary, train_op, states], feed_dict={
# X: batch_x, X_length: batch_x_length, Y: batch_y})
# pdb.set_trace()
_, state = sess.run([train_op, states],
feed_dict={
X: batch_x,
X_length: batch_x_length,
Y: batch_y
})
training_loss = []
training_acc = []
for i in range(1, train.data.shape[0] // batch_size + 1):
batch = train.sample(batch_size)
batch_x = batch.data
batch_y = batch.target
batch_x_length = batch.length
batch_x_length = batch_x_length.reshape((-1))
loss_tmp, acc_tmp = sess.run([loss_op, accuracy],
feed_dict={
X: batch_x,
X_length: batch_x_length,
Y: batch_y
})
training_loss.append(loss_tmp)
training_acc.append(acc_tmp)
log.info("Step " + str(step) + ", Minibatch Loss= " +
"{:.4f}".format(np.mean(training_loss)) +
", Training Accuracy= " +
"{:.3f}".format(np.mean(training_acc)))
validation_loss = []
validation_acc = []
for i in range(1, validation.data.shape[0] // batch_size + 1):
batch = validation.sample(batch_size)
batch_x = batch.data
batch_y = batch.target
batch_x_length = batch.length
batch_x_length = batch_x_length.reshape((-1))
loss_tmp, acc_tmp = sess.run([loss_op, accuracy],
feed_dict={
X: batch_x,
X_length: batch_x_length,
Y: batch_y
})
validation_loss.append(loss_tmp)
validation_acc.append(acc_tmp)
log.info("Step " + str(step) + ", num_hidden= " +
"{:.4f}".format(num_hidden) + ", dropout= " +
"{:.3f}".format(dropout) + ", Validation Loss= " +
"{:.4f}".format(np.mean(validation_loss)) +
", Validation Accuracy= " +
"{:.3f}".format(np.mean(validation_acc)))
if np.mean(validation_acc) < previous_valid_acc:
break
previous_valid_acc = np.mean(validation_acc)
#visualize activation of each neuron at each word in 20 tweets
dropout = 0
result = []
num_tweets = 10 #number of tweets to observe
batch = validation.sample(
num_tweets) #change back to batch_size as needed
batch_x = batch.data
batch_y = batch.target
batch_x_length = batch.length
for i in range(num_tweets):
batch_x_input = []
batch_y_input = np.array([batch_y[i]] * 93)
batch_x_length_input = []
for j in range(1, 1 + batch_x.shape[1]):
batch_x_input.append(
np.append(batch_x[i][:j], [0] * (batch_x.shape[1] - j)))
batch_x_length_input.append(j)
for j in range(batch_x.shape[1] + 1, 93 + 1):
batch_x_input.append(np.array([0] * batch_x.shape[1]))
batch_x_length_input.append(0)
batch_x_input = np.array(batch_x_input)
batch_x_length_input = np.array(batch_x_length_input).reshape((-1))
# state_list, embed_list = sess.run([states, embed], feed_dict={
# X: batch_x_input, X_length: batch_x_length_input, Y: batch_y_input})
# pdb.set_trace()
state_list, predicted = sess.run([states, prediction],
feed_dict={
X: batch_x_input,
X_length:
batch_x_length_input,
Y: batch_y_input
})
# loss_tmp, acc_tmp = sess.run([loss_op, accuracy], feed_dict={X: batch_x, X_length: batch_x_length,
# Y: batch_y})
# print(acc_tmp)
# pdb.set_trace()
res = {} # key: three keys for each word in tweet
for j in range(batch_x_length[i]):
res[j, 'state'] = state_list[0][0][j]
res[j, 'word'] = vocab_by_value[batch_x[i][j]]
res[j, 'predicted'] = predicted[j]
result.append(res)
return previous_valid_acc, result, batch_y
if not os.path.exists(dest):
print 'directory \'%s\' does not exist.' % (dest)
sys.exit()
elif not os.path.isdir(dest):
print 'ouptut destination \'%s\' should be a directory' % (dest)
sys.exit()
parts, istar = args.num, args.tar
verbose = args.verbose
base = osw.basename(target)
path = osw.getpath(dest, base + '.fsplit')
try:
if verbose:
print 'Splitting \'%s\' into \'%d\' parts' % (target, parts)
main.split(target, num=parts, dest=dest) # now split it
if istar:
if verbose:
print 'Creating Tarfiles'
tar.createTarAll(path)
if verbose:
print 'Tarfiles created'
if verbose:
print 'splits saved in \'%s\'' % (path)
print 'Splitting Complete'
except Exception, e:
if os.path.isdir(path):
shutil.rmtree(path)
print e
finally:
print 'Exiting Now'