def check_set(self, attr, expected):
self.assertEqual(self.s.attributes[attr].pv.caput.call_count, 1)
call_args = self.s.attributes[attr].pv.caput.call_args
val = call_args[0][0]
self.assertEquals(
val, expected, "{}: expected {} got {}".format(attr, expected, val))
Attribute.update(self.s.attributes[attr], val)
self.s.attributes[attr].pv.reset_mock()
def set_configured(self):
# Set all the pvs to the right value
for attr in sorted(self.send_params):
self.s.attributes[attr]._value = self.send_params[attr]
self.s.configure(block=False, **self.in_params)
Attribute.update(self.s.attributes["delete"], True)
cothread.Yield()
Attribute.update(self.s.attributes["xml"], self.s._sconfig.seq_items[1].seq_params["xml"])
cothread.Yield()
self.assertEqual(self.s.state, DState.Ready)
def set_configured(self):
# Set all the pvs to the right value
for attr in sorted(self.send_params):
self.s.attributes[attr]._value = self.send_params[attr]
self.s.configure(block=False, **self.in_params)
cothread.Yield()
self.check_set("positionMode", True)
Attribute.update(
self.s.attributes["xml"], self.s._sconfig.seq_items[1].seq_params["xml"])
cothread.Yield()
self.assertEqual(self.s.state, DState.Ready)
self.s.attributes["writeStatus"]._value = "Ok"
def test_run(self):
self.set_configured()
# Do a run
spawned = cothread.Spawn(self.s.run)
cothread.Yield()
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Running)
self.check_set("capture", 1)
self.assertEqual(self.s.capture, 1)
Attribute.update(self.s.attributes["capture"], False)
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Idle)
spawned.Wait(1)
self.assertEqual(self.s.stateMachine.state, DState.Idle)
def test_run(self):
self.set_configured()
spawned = cothread.Spawn(self.s.run)
# Yield to let run run
cothread.Yield()
self.assertEqual(self.s.state, DState.Ready)
# Yield to let do_run run
cothread.Yield()
self.assertEqual(self.s.state, DState.Running)
self.check_set("acquire", 1)
self.assertEqual(self.s.acquire, 1)
Attribute.update(self.s.attributes["acquire"], False)
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Idle)
spawned.Wait(1)
self.assertEqual(self.s.stateMachine.state, DState.Idle)
def test_abort(self):
self.set_configured()
spawned = cothread.Spawn(self.s.run)
cothread.Yield()
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Running)
self.check_set("acquire", 1)
self.assertEqual(self.s.acquire, 1)
aspawned = cothread.Spawn(self.s.abort)
cothread.Yield()
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Aborting)
self.check_set("acquire", 0)
Attribute.update(self.s.attributes["acquire"], False)
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Aborted)
spawned.Wait(1)
aspawned.Wait(1)
def test_abort(self):
self.set_configured()
spawned = cothread.Spawn(self.s.run)
cothread.Yield()
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Running)
self.check_set("scanStart", 1)
self.assertEqual(self.s.scanStart, 1)
Attribute.update(self.s.attributes["progState"], "Scanning")
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Running)
aspawned = cothread.Spawn(self.s.abort)
cothread.Yield()
Attribute.update(self.s.attributes["progState"], "Idle")
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Aborted)
spawned.Wait(1)
aspawned.Wait(1)
def test_mismatch(self):
self.set_configured()
Attribute.update(self.s.attributes["arrayCallbacks"], False)
self.assertEqual(self.s.state, DState.Ready)
cothread.Yield()
self.assertEqual(self.s.state, DState.Idle)
def test_mismatch(self):
self.set_configured()
Attribute.update(self.s.attributes["extraDimSizeN"], 2)
self.assertEqual(self.s.stateMachine.state, DState.Ready)
cothread.Yield()
self.assertEqual(self.s.stateMachine.state, DState.Idle)
class SimDetector(PausableDevice):
@wrap_method(
simDetector=InstanceAttribute(SimDetectorDriver, "SimDetectorDriver Device"),
hdf5Writer=InstanceAttribute(Hdf5Writer, "Hdf5Writer Device"),
positionPlugin=InstanceAttribute(
PositionPlugin, "PositionPlugin Device"),
)
def __init__(self, name, simDetector, positionPlugin, hdf5Writer):
super(SimDetector, self).__init__(name)
self.simDetectorDriver = simDetector
self.positionPlugin = positionPlugin
self.hdf5Writer = hdf5Writer
self.children = [simDetector, positionPlugin, hdf5Writer]
# Child state machine listeners
for c in self.children:
c.add_listener(self.post_changes, "stateMachine")
self.child_statemachines = [c.stateMachine for c in self.children]
# Run monitors
hdf5Writer.add_listener(
self.post_changes, "attributes.uniqueId")
hdf5Writer.add_listener(
self.post_changes, "attributes.capture")
positionPlugin.add_listener(
self.post_changes, "attributes.running")
def add_all_attributes(self):
super(SimDetector, self).add_all_attributes()
# Configure
self._thing = None
self.exposure = Attribute(VDouble, "Exposure time for each frame")
self.exposure = 1.2
if self.exposure > 0:
print "blah"
self.exposure.update(1.2, alarm=Alarm.disconnected())
if self.exposure._value > 0:
print "blah"
self.period = Attribute(VDouble, "Time between the start of each frame")
self.positions = Attribute(
VTable,
"Position table, column headings are dimension names, "
"slowest changing first")
self.hdf5File = Attribute(VString, "HDF5 full file path to write")
# Monitor
self.dimensions = Attribute(
VIntArray, "Detected dimensionality of positions")
def _validate_hdf5Writer(self, hdf5File, positions, dimensions,
totalSteps):
filePath, fileName = os.path.split(hdf5File)
dimNames = []
dimUnits = []
names = [c[0] for c in positions]
indexNames = [n for n in names if n.endswith("_index")]
for name, _, _, unit in positions:
if not name.endswith("_index"):
dimNames.append(name)
if unit:
dimUnits.append(unit)
else:
dimUnits.append("mm")
assert len(dimNames) == len(dimensions), \
"Can't unify position number of index columns {} with " \
"dimensions {}".format(len(dimNames), dimensions)
return self.hdf5Writer.validate(
filePath, fileName, dimNames, dimUnits, indexNames, dimensions)
@wrap_method()
def validate(self, hdf5File, exposure, positions=def_positions,
period=None):
# Validate self
dimensions, positions = self._add_position_indexes(positions)
# Validate simDetectorDriver
totalSteps = len(positions[0][2])
sim_params = self.simDetectorDriver.validate(exposure, totalSteps, period)
runTime = sim_params["runTime"]
runTimeout = sim_params["runTimeout"]
period = sim_params["period"]
# Validate position plugin
self.positionPlugin.validate(positions)
# Validate hdf writer
self._validate_hdf5Writer(hdf5File, positions, dimensions, totalSteps)
return super(SimDetector, self).validate(locals())
def _add_position_indexes(self, positions):
# which columns are index columns?
names = [column[0] for column in positions]
indexes = [n[:-len("_index")] for n in names if n.endswith("_index")]
non_indexes = [n for n in names if not n.endswith("_index")]
expected_indexes = ["{}_index".format(n) for n in non_indexes]
# check if indexes are supplied
if indexes == expected_indexes or indexes == ["n_index"]:
# just get dimensionality from these indexes
dims = [max(d) + 1 for n, _, d, _ in positions if n in indexes]
index_columns = [c for c in positions if n in indexes]
else:
# detect dimensionality of non_index columns
uniq = [sorted(set(d))
for n, _, d, _ in positions if n in non_indexes]
dims = [len(pts) for pts in uniq]
npts = len(positions[0][2])
if numpy.prod(dims) != npts:
# This is a sparse scan, should be written as long list
dims = [npts]
index_columns = [
("n_index", VInt, numpy.arange(npts, dtype=numpy.int32), '')]
else:
# Create position table
index_columns = []
for name, sort in zip(non_indexes, uniq):
index = "{}_index".format(name)
# select the correct named column
data = [d for n, _, d, _ in positions if n == name][0]
# work out their index in the unique sorted list
data = numpy.array([sort.index(x)
for x in data], dtype=numpy.int32)
index_columns.append((index, VInt, data, ''))
positions = [c for c in positions if n in non_indexes] + index_columns
return dims, positions
def _configure_simDetectorDriver(self):
self.simDetectorDriver.configure(
self.exposure, self.totalSteps - self.currentStep, self.period,
self.currentStep, block=False)
def _configure_positionPlugin(self):
if self.currentStep > 0:
positions = []
for n, t, d, u in self.positions:
positions.append([n, t, d[self.currentStep:], u])
else:
positions = self.positions
assert self.simDetectorDriver.portName is not None, \
"Expected simDetectorDriver.portName != None"
self.positionPlugin.configure(
positions, self.currentStep + 1, self.simDetectorDriver.portName,
block=False)
def _configure_hdf5Writer(self):
params = self._validate_hdf5Writer(self.hdf5File, self.positions,
self.dimensions, self.totalSteps)
params = {k: v for k, v in params.items()
if k in self.hdf5Writer.configure.arguments}
assert self.positionPlugin.portName is not None, \
"Expected positionPlugin.portName != None"
params.update(arrayPort=self.positionPlugin.portName, block=False)
self.hdf5Writer.configure(**params)
def do_configure(self, config_params, task):
"""Start doing a configuration using config_params.
Return DState.Configuring, message when started
"""
for d in self.children:
assert d.state in DState.canConfig(), \
"Child device {} in state {} is not configurable"\
.format(d, d.state)
# Setup self
for name, value in config_params.items():
setattr(self, name, value)
self.stepsPerRun = 1
self.currentStep = 0
task.report("Configuring simDetectorDriver")
self._configure_simDetectorDriver()
task.report("Configuring positionPlugin")
self._configure_positionPlugin()
# Setup config matcher
self._sconfig = ConfigMatcher(
SeqTransitionItem(
self.child_statemachines,
DState.Ready, DState.rest()))
name, changes = task.report_wait("Wait for plugins to configure")
while not self._sconfig.check_done(name, changes):
name, changes = task.report_wait()
task.report("Configuring hdf5Writer")
self._configure_hdf5Writer(self.positionPlugin.dimensions)
# Finished
task.report("Configuring done", DState.Ready)
def do_ready(self, value, changes):
"""Work out if the changes mean we are still ready for run.
Return None, message if it is still ready.
Return DState.Idle, message if it isn't still ready.
"""
mismatches = self._sconfig.mismatches()
if mismatches:
yield "Unconfigured: {}".format(mismatches), DState.Idle
def do_run(self):
"""Start doing a run.
Return DState.Running, message when started
"""
plugins = [self.simDetectorDriver.stateMachine,
self.positionPlugin.stateMachine]
for d in plugins:
assert d.state == DState.Ready, \
"Child device {} in state {} is not runnable"\
.format(d.name, d.state)
self.report("Running positionPlugin")
self.positionPlugin.run(block=False)
# If hdf writer is not already running then run it
if self.hdf5Writer.state != DState.Running:
self.hdf5Writer.run(block=False)
t = SeqTransitionItem(self.hdf5Writer.attributes["capture"], True)
name, changes = yield "Wait for hdf5Writer to run"
while not t.check_done(name, changes):
name, changes = yield "Wait for hdf5Writer to run"
# Now start the other plugins
t = SeqTransitionItem(self.positionPlugin.attributes["running"], True)
name, changes = yield "Wait for hdf5Writer to run"
while not t.check_done(name, changes):
name, changes = yield "Wait for hdf5Writer to run"
seq_items += [
SeqTransitionItem(
"Wait for positionPlugin to run",
self.positionPlugin.attributes["running"], True),
SeqFunctionItem(
"Running simDetectorDriver", self.simDetectorDriver.run,
block=False),
SeqTransitionItem(
"Wait for run to finish", self.child_statemachines,
DState.Idle, DState.rest()),
]
# Add a configuring object
self._srun = Sequence(self.name + ".SRun", *seq_items)
# Start the sequence
item_done, msg = self._srun.start()
if item_done:
# Arrange for a callback to process the next item
self.post_changes(None, None)
return DState.Running, msg
def do_running(self, value, changes):
"""Work out if the changes mean running is complete.
Return None, message if it isn't.
Return DState.Idle, message if it is and we are all done
Return DState.Ready, message if it is and we are partially done
"""
# Update progress
if value == self.hdf5Writer.attributes["uniqueId"]:
self.currentStep = value.value
running, item_done, msg = self._srun.process(value, changes)
if running is False:
# Finished
return DState.Idle, "Running done"
elif item_done:
# Arrange for a callback to process the next item
self.post_changes(None, None)
# Still going
return DState.Running, msg
def do_abort(self):
"""Stop acquisition
"""
if self.state == DState.Configuring:
self._sconfig.abort()
elif self.state == DState.Running:
self._srun.abort()
elif self.state == DState.Rewinding:
self._spause.abort()
for d in self.children:
if d.state in DState.canAbort():
d.abort(block=False)
self.post_changes(None, None)
return DState.Aborting, "Aborting started"
def do_aborting(self, value, changes):
"""Work out if the changes mean aborting is complete.
Return None, message if it isn't.
Return DState.Aborted, message if it is.
"""
child_states = [c.state for c in self.children]
rest = [s in DState.rest() for s in child_states]
if all(rest):
# All are in rest states
no_fault = [s != DState.Fault for s in child_states]
assert all(no_fault), \
"Expected no fault, got {}".format(child_states)
return DState.Aborted, "Aborting finished"
else:
# No change
return None, None
def do_reset(self):
"""Start doing a reset from aborted or fault state.
Return DState.Resetting, message when started
"""
seq_items = []
# Abort any items that need to be aborted
need_wait = []
need_reset = []
for d in self.children:
if d.state not in DState.rest():
d.abort(block=False)
need_wait.append(d.stateMachine)
need_reset.append(d)
elif d.state in DState.canReset():
need_reset.append(d)
if need_wait:
seq_items.append(SeqTransitionItem(
"Wait for plugins to stop aborting",
need_wait, DState.rest()))
if need_reset:
for d in need_reset:
seq_items.append(SeqFunctionItem(
"Reset {}".format(d.name), d.reset,
block=False))
seq_items.append(SeqTransitionItem(
"Wait for plugins to stop resetting",
[d.stateMachine for d in need_reset], DState.rest()))
# Add a resetting object
if seq_items:
self._sreset = Sequence(self.name + ".SReset", *seq_items)
# Start the sequence
item_done, msg = self._sreset.start()
if item_done:
# Arrange for a callback to process the next item
self.post_changes(None, None)
else:
self._sreset = None
msg = "Started resetting"
self.post_changes(None, None)
return DState.Resetting, msg
def do_resetting(self, value, changes):
"""Work out if the changes mean resetting is complete.
Return None, message if it isn't.
Return DState.Idle, message if it is.
"""
if self._sreset is None:
return DState.Idle, "Resetting done"
running, item_done, msg = self._sreset.process(value, changes)
if running is False:
# Finished
child_states = [d.state for d in self.children]
nofault = [s != DState.Fault for s in child_states]
assert all(nofault), \
"Expected all not in fault, got {}".format(child_states)
return DState.Idle, "Resetting done"
elif item_done:
# Arrange for a callback to process the next item
self.post_changes(None, None)
# Still going
return DState.Resetting, msg
def do_rewind(self, steps=None):
"""Start a pause"""
# make some sequences for config
plugins = [self.simDetectorDriver.stateMachine,
self.positionPlugin.stateMachine]
for d in plugins:
assert d.state in DState.canAbort(), \
"Child device {} in state {} is not abortable"\
.format(d, d.state)
seq_items = []
# if we need to abort
if self.simDetectorDriver.state not in DState.canConfig() or \
self.positionPlugin.state not in DState.canConfig():
seq_items += [
SeqFunctionItem(
"Stopping simDetectorDriver", self.simDetectorDriver.abort,
block=False),
SeqFunctionItem(
"Stopping positionPlugin", self.positionPlugin.abort,
block=False),
SeqTransitionItem(
"Wait for plugins to stop", plugins,
DState.Aborted, DState.rest()),
SeqFunctionItem(
"Reset simDetectorDriver", self.simDetectorDriver.reset,
block=False),
SeqFunctionItem(
"Reset positionPlugin", self.positionPlugin.reset,
block=False),
SeqTransitionItem(
"Wait for plugins to reset", plugins,
DState.Idle, DState.rest())
]
# Add the config stages
seq_items += [
SeqFunctionItem(
"Configuring positionPlugin", self._configure_positionPlugin),
SeqFunctionItem(
"Configuring simDetectorDriver", self._configure_simDetectorDriver),
SeqTransitionItem(
"Wait for plugins to configure", plugins,
DState.Ready, DState.rest()),
]
# Add a configuring object
self._spause = Sequence(self.name + ".SPause", *seq_items)
if self.state == DState.Ready:
self._post_rewind_state = DState.Ready
else:
self._post_rewind_state = DState.Paused
if steps is not None:
self.currentStep -= steps
# Start the sequence
item_done, msg = self._spause.start()
if item_done:
# Arrange for a callback to process the next item
self.post_changes(None, None)
return DState.Rewinding, msg
def do_rewinding(self, value, changes):
"""Receive run status events and move to next state when finished"""
running, item_done, msg = self._spause.process(value, changes)
if running is False:
# Finished
return self._post_rewind_state, "Rewinding done"
elif item_done:
# Arrange for a callback to process the next item
self.post_changes(None, None)
# Still going
return None, msg
