def poop():
global sources
meas_focus = get_measurements(sources=sources,
mode='circular',
psfs=psfs_focus,
real=True)
meas_mid = get_measurements(sources=sources,
mode='circular',
psfs=psfs_mid,
real=True)
meas_outer = get_measurements(sources=sources,
mode='circular',
psfs=psfs_outer,
real=True)
meas_csbs = get_measurements(sources=sources,
mode='circular',
psfs=psfs_csbs,
real=True)
meas_focus = add_noise(meas_focus, model='gaussian', dbsnr=15)
meas_mid = add_noise(meas_mid, model='gaussian', dbsnr=15)
meas_outer = add_noise(meas_outer, model='gaussian', dbsnr=15)
meas_csbs = add_noise(meas_csbs, model='gaussian', dbsnr=15)
# meas_focus = add_noise(meas_focus, model='poisson', max_count=20)
# meas_mid = add_noise(meas_mid, model='poisson', max_count=20)
# meas_outer = add_noise(meas_outer, model='poisson', max_count=20)
# meas_csbs = add_noise(meas_csbs, model='poisson', max_count=20)
recon_focus = tikhonov(psfs=psfs_focus,
measurements=meas_focus,
tikhonov_lam=1e-3)
recon_mid = tikhonov(psfs=psfs_mid,
measurements=meas_mid,
tikhonov_lam=1e-3)
recon_outer = tikhonov(psfs=psfs_outer,
measurements=meas_outer,
tikhonov_lam=1e-3)
recon_csbs = tikhonov(psfs=psfs_csbs,
measurements=meas_csbs,
tikhonov_lam=1e-3)
recon_focus -= np.mean(recon_focus, axis=(1, 2))[:, np.newaxis, np.newaxis]
recon_mid -= np.mean(recon_mid, axis=(1, 2))[:, np.newaxis, np.newaxis]
recon_outer -= np.mean(recon_outer, axis=(1, 2))[:, np.newaxis, np.newaxis]
recon_csbs -= np.mean(recon_csbs, axis=(1, 2))[:, np.newaxis, np.newaxis]
sources_comp = sources - np.mean(sources, axis=(1, 2))[:, np.newaxis,
np.newaxis]
result_focus = np.sum(compare_ssim(sources_comp, recon_focus))
result_mid = np.sum(compare_ssim(sources_comp, recon_mid))
result_outer = np.sum(compare_ssim(sources_comp, recon_outer))
result_csbs = np.sum(compare_ssim(sources_comp, recon_csbs))
print('focused SSIM sum:', result_focus)
print('middle SSIM sum:', result_mid)
print('outer SSIM sum:', result_outer)
print('csbs SSIM sum:', result_csbs)
return [result_focus, result_mid, result_outer, result_csbs]
def measure_reconstruct():
noise = 15 # dB SNR
meas_focus = get_measurements(sources=sources,
mode='circular',
psfs=psfs_focus,
real=True)
meas_csbs = get_measurements(sources=sources,
mode='circular',
psfs=psfs_csbs,
real=True)
meas_focus = add_noise(meas_focus, model='gaussian', dbsnr=noise)
meas_csbs = add_noise(meas_csbs, model='gaussian', dbsnr=noise)
recon_focus = tikhonov(psfs=psfs_focus,
measurements=meas_focus,
tikhonov_lam=1e-3)
recon_csbs = tikhonov(psfs=psfs_csbs,
measurements=meas_csbs,
tikhonov_lam=1e-3)
result_focus = np.sum(compare_ssim(sources, recon_focus))
result_csbs = np.sum(compare_ssim(sources, recon_csbs))
ratio = result_csbs / result_focus
return dict(**locals())
def cost(tikhonov_lam_exp, csbs_lam_exp):
# csbs_grid
psfs.copies = np.repeat(12, 12)
# csbs_focus
# psfs.copies = np.repeat(12, 2)
csbs(psfs, sse_cost, 12, lam=10**csbs_lam_exp, order=1)
measured = get_measurements(psfs=psfs, sources=truth, real=True)
measured_noisy = add_noise(measured, model='poisson', max_count=500)
recon = tikhonov(
sources=measured,
psfs=psfs,
measurements=measured_noisy,
tikhonov_lam=10**tikhonov_lam_exp
)
plt.imshow(recon[0])
plt.show()
plt.pause(.05)
return compare_ssim(truth[0], recon[0]) + compare_ssim(truth[1], recon[1])
def cost(lam_exp, time_step_exp):
recon = ista(psfs=psfs,
measurements=measured,
lam=10**lam_exp,
time_step=10**time_step_exp,
iterations=100)[0]
cost = compare_ssim(truth[0], recon)
plt.subplot(1, 3, 3)
plt.title('Reconstruction - SSIM {:.3f}'.format(cost))
plt.imshow(recon)
plt.axis('off')
plt.xlabel('lam_exp={:.3f}\ntime_step_exp={:.3f}')
plt.show()
plt.pause(.05)
return cost if cost > 0 else 0
real=True)
meas_csbs = get_measurements(sources=sources,
mode='circular',
psfs=psfs_csbs,
real=True)
meas_focus = add_noise(meas_focus, model='gaussian', dbsnr=noise)
meas_csbs = add_noise(meas_csbs, model='gaussian', dbsnr=noise)
recon_focus = tikhonov(psfs=psfs_focus,
measurements=meas_focus,
tikhonov_lam=1e-3)
recon_csbs = tikhonov(psfs=psfs_csbs,
measurements=meas_csbs,
tikhonov_lam=1e-3)
result_focus = np.sum(compare_ssim(sources, recon_focus))
result_csbs = np.sum(compare_ssim(sources, recon_csbs))
print(result_csbs / result_focus, result_focus)
# print('focused SSIM:', result_focus)
# print('csbs SSIM:', result_csbs)
# recon_focus_mean = recon_focus - np.mean(recon_focus, axis=(1, 2))[:, np.newaxis, np.newaxis]
# recon_csbs_mean = recon_csbs - np.mean(recon_csbs, axis=(1, 2))[:, np.newaxis, np.newaxis]
# sources_mean = sources - np.mean(sources, axis=(1, 2))[:, np.newaxis, np.newaxis]
# result_focus_mean = np.sum(compare_ssim(sources_mean, recon_focus_mean))
# result_csbs_mean = np.sum(compare_ssim(sources_mean, recon_csbs_mean))
# print('focused SSIM, mean:', result_focus_mean)
def get_ssim(source, recon):
return compare_ssim(recon, source)
dbsnr=15,
model='Gaussian')
measured_noisy_csbs = add_noise(measured_csbs, dbsnr=15, model='Gaussian')
recon_focus = tikhonov(psfs=psfs_focus,
measurements=measured_noisy_focus,
tikhonov_lam=1e-3,
tikhonov_order=order)
recon_csbs = tikhonov(psfs=psfs_csbs,
measurements=measured_noisy_csbs,
tikhonov_lam=1e-3,
tikhonov_order=order)
psnr_focus.append(compare_psnr(sources, recon_focus))
psnr_csbs.append(compare_psnr(sources, recon_csbs))
ssim_focus.append(np.sum(compare_ssim(sources, recon_focus)))
ssim_csbs.append(np.sum(compare_ssim(sources, recon_csbs)))
print('psnr_focus:{} \npsnr_csbs:{} \nssim_focus:{} \nssim_csbs:{}'.format(
np.array(psnr_focus).mean(),
np.array(psnr_csbs).mean(),
np.array(ssim_focus).mean(),
np.array(ssim_csbs).mean()))
plotter4d(recon_focus,
title='recon_focus \n ssim:{} psnr:{}'.format(
np.array(ssim_focus).mean(),
np.array(psnr_focus).mean()),
colorbar=True)
plotter4d(recon_csbs,
title='recon_csbs \n ssim:{} psnr:{}'.format(