Exemple #1
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    def test_ewald(self):
        # Add oxidation states to all of the structures
        for s in [self.nacl, self.cscl, self.diamond]:
            s.add_oxidation_state_by_guess()

        # Test basic
        ewald = EwaldEnergy(accuracy=2)
        self.assertArrayAlmostEqual(ewald.featurize(self.diamond), [0])
        self.assertAlmostEqual(ewald.featurize(self.nacl)[0], -4.418439, 2)
        self.assertLess(ewald.featurize(self.nacl),
                        ewald.featurize(self.cscl))  # Atoms are closer in NaCl
Exemple #2
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    def test_ewald(self):
        # Add oxidation states to all of the structures
        for s in [self.nacl, self.cscl, self.diamond]:
            s.add_oxidation_state_by_guess()

        # Test basic
        ewald = EwaldEnergy(accuracy=2)
        self.assertArrayAlmostEqual(ewald.featurize(self.diamond), [0])
        self.assertAlmostEqual(ewald.featurize(self.nacl)[0], -8.84173626, 2)
        self.assertLess(ewald.featurize(self.nacl),
                        ewald.featurize(self.cscl))  # Atoms are closer in NaCl

        # Perform Ewald summation by "hand",
        #  Using the result from GULP
        self.assertArrayAlmostEqual([-8.84173626], ewald.featurize(self.nacl), 2)
Exemple #3
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    def test_ewald(self):
        # Add oxidation states to all of the structures
        for s in [self.nacl, self.cscl, self.diamond]:
            s.add_oxidation_state_by_guess()

        # Test basic
        ewald = EwaldEnergy(accuracy=2)
        self.assertArrayAlmostEqual(ewald.featurize(self.diamond), [0])
        self.assertAlmostEqual(ewald.featurize(self.nacl)[0], -8.84173626, 2)
        self.assertLess(ewald.featurize(self.nacl),
                        ewald.featurize(self.cscl))  # Atoms are closer in NaCl

        # Perform Ewald summation by "hand",
        #  Using the result from GULP
        self.assertArrayAlmostEqual([-8.84173626], ewald.featurize(self.nacl), 2)