def add_dataset(request, server_id, dataset_id):
data = get_header_data(request.user)
if not exists_active_collection_for_user(request.user):
return HttpResponseRedirect(reverse('home', args=()))
if data["credential_flag"] == NO_CREDENTIALS:
return HttpResponseRedirect(reverse('home', args=()))
else:
server = get_object_or_404(Server, pk=server_id)
if exists_active_collection_for_user(request.user):
image_ids = request.POST.getlist('checks[]')
for image_id in image_ids:
image = add_image_to_collection(request.user, server, image_id,
0)
else:
messages.error(
request,
"You have no Active Image Collection; Please create a Collection!"
)
return HttpResponseRedirect(
reverse('webgallery_show_dataset', args=(server_id, dataset_id)))
def add_ebi_sca_image(request, server_id, image_id, path_from):
data = get_header_data(request.user)
if not exists_active_collection_for_user(request.user):
return HttpResponseRedirect(reverse('home', args=()))
if data["credential_flag"] == NO_CREDENTIALS:
return HttpResponseRedirect(reverse('home', args=()))
else:
server = get_object_or_404(Server, pk=server_id)
if exists_active_collection_for_user(request.user):
image = add_image_to_collection(request.user, server, image_id, 0)
else:
messages.error(
request,
"You have no Active Image Collection; Please create a Collection!"
)
if server.is_ebi_sca():
if path_from == "show_ebi_sca_image":
return HttpResponseRedirect(
reverse('webgallery_show_ebi_sca_image',
args=(server_id, image_id)))
def amend_cell(request, matrix_id, cell_id):
serverWordpress = get_primary_wordpress_server()
data = get_header_data(request.user)
if data["credential_flag"] == NO_CREDENTIALS:
return HttpResponseRedirect(reverse('home', args=()))
else:
cell = get_object_or_404(Cell, pk=cell_id)
matrix = get_object_or_404(Matrix, pk=matrix_id)
authority = get_authority_for_bench_and_user_and_requester(matrix, request.user)
if authority.is_viewer() == True or authority.is_none() == True:
matrix_cells = matrix.get_matrix()
columns = matrix.get_columns()
rows = matrix.get_rows()
data.update({ 'matrix': matrix, 'rows': rows, 'columns': columns, 'matrix_cells': matrix_cells })
return HttpResponseRedirect(reverse('matrix', args=(matrix_id,)))
else:
cell_link = get_blog_link_post_url() + cell.blogpost
matrix_link = 'matrix_link'
amend_cell = 'amend_cell'
credential = get_credential_for_user(request.user)
if not credential.has_apppwd():
matrix_link = ''
collection_image_list = list()
if matrix.has_last_used_collection():
collection_image_list = get_images_for_collection(matrix.last_used_collection)
else:
if exists_active_collection_for_user(request.user):
collection_image_list = get_active_collection_images_for_user(request.user)
collection_list = get_active_collection_for_user(request.user)
collection = collection_list[0]
matrix.set_last_used_collection(collection)
matrix.save()
if request.method == HTTP_POST:
form = SearchUrlForm(request.POST)
image = None
if form.is_valid():
cd = form.cleaned_data
url_string = cd.get('url_string')
url_string_ebi_sca_out = convert_url_ebi_sca_to_json(url_string)
url_string_omero_out = convert_url_omero_image_to_cpw(request, url_string)
if url_string_omero_out != '' and url_string_ebi_sca_out != '':
messages.error(request, "URL not found!")
form.add_error(None, "URL not found!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
if url_string_omero_out == '' and url_string_ebi_sca_out == '':
messages.error(request, "URL not found!")
form.add_error(None, "URL not found!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
if url_string_omero_out != '' and url_string_ebi_sca_out == '':
server = get_server_from_omero_url(url_string_omero_out)
image_id = get_id_from_omero_url(url_string_omero_out)
if exists_active_collection_for_user(request.user):
image = add_image_to_collection(request.user, server, image_id, 0)
queryset = get_active_collection_for_user(request.user)
for collection in queryset:
matrix.set_last_used_collection(collection)
else:
messages.error(request, "ERROR: You have no Active Image Collection; Please create a Collection!")
form.add_error(None, "ERROR: You have no Active Image Collection; Please create a Collection!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
if url_string_omero_out == '' and url_string_ebi_sca_out != '':
temp_dir = config('HIGHCHARTS_TEMP_DIR')
output_dir = config('HIGHCHARTS_OUTPUT_DIR')
highcharts_host = config('HIGHCHARTS_HOST')
highcharts_web = config('HIGHCHARTS_OUTPUT_WEB')
experiment_id = get_an_ebi_sca_experiment_id(url_string)
image_id = convert_url_ebi_sca_to_chart_id(url_string)
shell_command = create_an_ebi_sca_chart(url_string_ebi_sca_out, experiment_id, image_id, highcharts_host, temp_dir, output_dir)
success = call(str(shell_command), shell=True)
if success == 0:
server = get_server_from_ebi_sca_url(url_string_ebi_sca_out)
if exists_active_collection_for_user(request.user):
image = add_image_to_collection(request.user, server, image_id, 0)
queryset = get_active_collection_for_user(request.user)
for collection in queryset:
matrix.set_last_used_collection(collection)
else:
messages.error(request, "ERROR: You have no Active Image Collection; Please create a Collection!")
form.add_error(None, "ERROR: You have no Active Image Collection; Please create a Collection!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
else:
messages.error(request, "Unable to generate Chart - shell_command : FAILED!")
form.add_error(None, "Unable to generate Chart - shell_command : FAILED!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
cell.set_title(image.name)
cell.set_description(image.name)
cell.set_image(image)
cell.set_matrix(matrix)
post_id = ''
if cell.has_no_blogpost() == True:
credential = get_credential_for_user(request.user)
if credential.has_apppwd():
returned_blogpost = serverWordpress.post_wordpress_post(credential, cell.title, cell.description)
if returned_blogpost['status'] == WORDPRESS_SUCCESS:
post_id = returned_blogpost['id']
else:
messages.error(request, "ERROR: WordPress Error - Contact System Administrator!")
form.add_error(None, "ERROR: WordPress Error - Contact System Administrator!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
else:
cell.set_blogpost(post_id)
cell.save()
matrix.save()
else:
messages.error(request, "ERROR: Form is Invalid!")
form.add_error(None, "ERROR: Form is Invalid!")
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)
form = SearchUrlForm()
data.update({ 'form': form, 'collection_image_list': collection_image_list, 'amend_cell': amend_cell, 'matrix_link': matrix_link, 'cell': cell, 'cell_link': cell_link, 'matrix': matrix })
return render(request, 'matrices/amend_cell.html', data)