class TestDriver(unittest.TestCase):
def setUp(self):
self.request_id = str(uuid.uuid4())
self._driver = Driver(self.request_id)
@mock.patch("matrix.lambdas.daemons.v1.driver.Driver.redshift_role_arn")
@mock.patch(
"matrix.lambdas.daemons.v1.driver.Driver._add_request_query_to_sqs")
@mock.patch("matrix.common.aws.s3_handler.S3Handler.store_content_in_s3")
@mock.patch(
"matrix.common.request.request_tracker.RequestTracker.complete_subtask_execution"
)
def test_run_with_all_params(self, mock_complete_subtask_execution,
mock_store_content_in_s3, mock_add_to_sqs,
mock_redshift_role):
filter_ = {"op": "in", "field": "foo", "value": [1, 2, 3]}
fields = ["test.field1", "test.field2"]
feature = "gene"
mock_store_content_in_s3.return_value = "s3_key"
mock_redshift_role.return_value = "redshift_role"
self._driver.run(filter_, fields, feature, GenusSpecies.HUMAN.value)
mock_complete_subtask_execution.assert_called_once_with(Subtask.DRIVER)
self.assertEqual(mock_store_content_in_s3.call_count, 3)
@mock.patch("matrix.common.aws.sqs_handler.SQSHandler.add_message_to_queue"
)
@mock.patch(
"matrix.common.request.request_tracker.RequestTracker.complete_subtask_execution"
)
@mock.patch(
"matrix.common.aws.dynamo_handler.DynamoHandler.set_table_field_with_value"
)
def test___add_request_queries_to_sqs(self,
mock_set_table_field_with_value,
mock_complete_subtask_execution,
mock_add_to_queue):
config = MatrixInfraConfig()
config.set({'query_job_q_url': "query_job_q_url"})
self._driver.config = config
test_query_loc = "test_path"
self._driver._add_request_query_to_sqs(QueryType.CELL, test_query_loc)
payload = {
'request_id': self.request_id,
's3_obj_key': test_query_loc,
'type': "cell"
}
mock_add_to_queue.assert_called_once_with("query_job_q_url", payload)
def setUp(self):
self.request_id = str(uuid.uuid4())
self._driver = Driver(self.request_id)
def driver_handler(event, context):
# TODO: better error handling
assert ('request_id' in event and 'feature' in event and 'fields' in event
and 'filter' in event)
driver = Driver(event['request_id'])
driver.run(event["filter"], event["fields"], event["feature"])
def driver_handler(event, context):
assert ('request_id' in event and 'feature' in event and 'fields' in event
and 'filter' in event)
driver = Driver(event['request_id'])
driver.run(event["filter"], event["fields"], event["feature"],
event["genus_species"])