def test_kmers(self):
k = kmers('ABCDEFG', 2)
self.assertEqual(['AB', 'BC', 'CD', 'DE', 'EF', 'FG'], k)
k = kmers('ABCDEFG', 3)
self.assertEqual(['ABC', 'BCD', 'CDE', 'DEF', 'EFG'], k)
def test_repeat_region_assembly(self):
rep = 'ABCDEF'
seqs = kmers(rep + rep, len(rep))
contigs = assemble(seqs, len(rep) - 1, remap_min_exact_match=1)
self.assertEqual(0, len(contigs))
def test_kmers(self):
k = kmers('ABCDEFG', 2)
assert k == ['AB', 'BC', 'CD', 'DE', 'EF', 'FG']
k = kmers('ABCDEFG', 3)
assert k == ['ABC', 'BCD', 'CDE', 'DEF', 'EFG']