def setUp(self):
''' load inital parameters and/or data for testing'''
self.fnameAdj = 'data/3d_grid_adj.txt'
self.fnameCo = 'data/3d_grid_coords.txt'
self.fnameProp = 'data/3d_grid_properties.txt'
self.brain = mb.brainObj()
def setUp(self):
''' load inital parameters and/or data for testing'''
self.fnameAdj = 'data/3d_grid_adj.txt'
self.fnameCo = 'data/3d_grid_coords.txt'
self.fnameProp = 'data/3d_grid_properties.txt'
self.brain = mb.brainObj()
def setUp(self):
''' load inital parameters and/or data for testing'''
self.fnameAdj = 'data/3d_grid_adj.txt'
self.fnameCo = 'data/3d_grid_coords.txt'
self.fnameProps = 'data/3d_grid_properties.txt'
# initialise brain and plot objects
self.a = mb.brainObj()
self.b = plotObj()
# some data
self.edges = [(0,2),(0,4),(0,6)]
self.locations = {0:(1,1,1), 2:(2,2,2), 4:(3,3,3), 6:(4,4,4)}
def loadSkull(self):
""" load a skull file """
# get filename
f = str(self.ui.skullFilename.text())
# get brain name
brainName, brUsedBool = self.findBrainName()
# create brain object if it doesn't exist
if not (brUsedBool):
br = mb.brainObj()
self.brains[brainName] = br
else:
br = self.brains[brainName]
# read in file
br.importSkull(f)
# enable plot button
self.ui.skullPlot.setEnabled(True)
def loadSkull(self):
''' load a skull file '''
# get filename
f = str(self.ui.skullFilename.text())
# get brain name
brainName, brUsedBool = self.findBrainName()
# create brain object if it doesn't exist
if not (brUsedBool):
br = mb.brainObj()
self.brains[brainName] = br
else:
br = self.brains[brainName]
# read in file
br.importSkull(f)
# enable plot button
self.ui.skullPlot.setEnabled(True)
def setUp(self):
''' load inital parameters and/or data for testing'''
self.fnameAdj = 'data/3d_grid_adj.txt'
self.fnameCo = 'data/3d_grid_coords.txt'
self.fnameProps = 'data/3d_grid_properties.txt'
# initialise brain and plot objects
self.a = mb.brainObj()
self.b = plotObj()
# some data
self.edges = [(0, 2), (0, 4), (0, 6)]
self.locations = {
0: (1, 1, 1),
2: (2, 2, 2),
4: (3, 3, 3),
6: (4, 4, 4)
}
def loadBrain(self):
''' load a brain using given filenames '''
self.ui.adjPlot.setEnabled(False)
# get adjacency filename
adj = str(self.ui.adjFilename.text())
# get threshold
thType, thVal = self.getThresholdType()
# get spatial info file
coords = str(self.ui.spatialFilename.text())
# make name for brain
brName, brainUsedBool = self.findBrainName()
self.currentBrainName = brName
# create and add to list of brains
if brainUsedBool:
# case where brain name exists already
br = self.brains[brName]
else:
# make a new brain
br = mb.brainObj()
# add properties
br.importAdjFile(adj)
br.importSpatialInfo(coords)
br.applyThreshold(thresholdType = thType, value = thVal)
self.brains[brName] = br
# add to brains selected for highlighting
if not(brainUsedBool):
self.ui.brainSelect.addItem(brName)
# enable plot button
# try:
# QtCore.QObject.disconnect(self.ui.adjPlot, QtCore.SIGNAL('clicked()'), self.rePlotBrain)
# except:
# pass
QtCore.QObject.connect(self.ui.adjPlot, QtCore.SIGNAL('clicked()'), self.plotBrain)
self.ui.adjPlot.setEnabled(True)
