def __init__(self):
BaseCPOEWeb.__init__(self)
# Initialize default values to place in template htm file
self.requestData["sim_user_id"] = ""
self.requestData["sim_patient_id"] = ""
self.requestData["sim_state_id"] = ""
self.requestData["sim_time"] = "0"
self.requestData["currentDataPage"] = NotesReview.__name__
self.requestData["autoQuery"] = ""
self.requestData["maxResults"] = "50"
# Maximum of results to show when searching for orders
self.requestData["newOrderItemId"] = list()
self.requestData["discontinuePatientOrderId"] = list()
# Sub-Table / Dynamically loaded data
self.requestData["currentDataTable"] = ""
self.requestData["dataEntryTable"] = ""
self.requestData["searchResultsTable"] = ""
# Map strings to sub-page class lookups. Could use importlib and getattr to do dynamic reflection
# but this makes it more explicit what is happening.
self.pageClassByName = dict()
for subPageClass in [NotesReview, ResultsReview, ActiveOrders]:
self.pageClassByName[subPageClass.__name__] = subPageClass
self.addHandler("signOrders",
PatientCareFrame.action_signOrders.__name__)
self.addHandler("sim_patient_id",
PatientCareFrame.action_default.__name__)
def __init__(self):
BaseCPOEWeb.__init__(self)
self.requestData["userOptions"] = "";
self.requestData["patientOptions"] = "";
self.requestData["stateOptions"] = "";
self.addHandler("createUser", SimSetup.action_createUser.__name__);
self.addHandler("createPatient", SimSetup.action_createPatient.__name__);
self.addHandler("copyPatientTemplate", SimSetup.action_copyPatientTemplate.__name__);
def __init__(self):
BaseCPOEWeb.__init__(self)
# Initialize default values to place in template htm file
# If not already available, build a list of order / item categories to select from
if "clinicalItemCategoryAvailable" not in Options.FIELD2VALUE:
resultTable = \
DBUtil.execute \
( """select
cic.clinical_item_category_id,
cic.description,
cic.default_recommend,
count(ci.name)
from
clinical_item as ci,
clinical_item_category as cic
where
ci.clinical_item_category_id = cic.clinical_item_category_id and
ci.analysis_status = 1
group by
cic.clinical_item_category_id,
cic.description,
cic.default_recommend
order by
count(ci.name) desc
"""
)
optionValues = []
optionTexts = []
excludeOptionValues = []
excludeOptionTexts = []
for (categoryId, categoryDescr, defaultRecommend,
itemCount) in resultTable:
opValue = str(categoryId)
opText = "(%d) %s" % (itemCount, categoryDescr)
optionValues.append(opValue)
optionTexts.append(opText)
if not defaultRecommend:
# Don't want this included by default, add to exclusion list
excludeOptionValues.append(opValue)
excludeOptionTexts.append(opText)
Options.FIELD2VALUE["clinicalItemCategoryAvailable"] = optionValues
Options.FIELD2TEXT["clinicalItemCategoryAvailable"] = optionTexts
Options.FIELD2VALUE[
"clinicalItemCategoryExcluded"] = excludeOptionValues
Options.FIELD2TEXT[
"clinicalItemCategoryExcluded"] = excludeOptionTexts
self.requestData[
"clinicalItemCategoryOptions"] = self.optionTagsFromField(
"clinicalItemCategoryAvailable")
self.requestData[
"clinicalItemCategoryExcludedOptions"] = self.optionTagsFromField(
"clinicalItemCategoryExcluded")
# If not already available, build a list of order / item categories to exclude by default
if "clinicalItemExcluded" not in Options.FIELD2VALUE:
resultTable = \
DBUtil.execute \
( """select
ci.clinical_item_id,
ci.name,
ci.description
from
clinical_item as ci
where
ci.default_recommend = 0
order by
ci.name
"""
)
excludeOptionValues = []
excludeOptionTexts = []
for (clinicalItemId, itemName, itemDescription) in resultTable:
opValue = str(clinicalItemId)
opText = "%s - %s" % (itemName, itemDescription)
excludeOptionValues.append(opValue)
excludeOptionTexts.append(opText)
Options.FIELD2VALUE["clinicalItemExcluded"] = excludeOptionValues
Options.FIELD2TEXT["clinicalItemExcluded"] = excludeOptionTexts
self.requestData[
"clinicalItemExcludedOptions"] = self.optionTagsFromField(
"clinicalItemExcluded")
if "timeDeltaMax" not in Options.FIELD2VALUE:
secondsOptions = DELTA_NAME_BY_SECONDS.keys()
secondsOptions.sort()
Options.FIELD2VALUE["timeDeltaMax"] = [
str(seconds) for seconds in secondsOptions
]
Options.FIELD2TEXT["timeDeltaMax"] = [
DELTA_NAME_BY_SECONDS[seconds] for seconds in secondsOptions
]
self.requestData["timeDeltaMaxOptions"] = self.optionTagsFromList(
Options.FIELD2VALUE["timeDeltaMax"],
Options.FIELD2TEXT["timeDeltaMax"], "86400")
if "filterField" not in Options.FIELD2VALUE:
optionPairs = \
[
("baselineFreq", "Baseline Freq (nB/N)"),
("conditionalFreq", "Conditional Freq (nAB/nA)"),
("freqRatio", "Freq Ratio = (nAB/nA) / (nB/N)"),
("OR", "Odds Ratio (OR)"),
("OR95CILow", "OR 95% CI, Low"),
("OR95CIHigh", "OR 95% CI, High"),
("RR", "Relative Risk (RR)"),
("RR95CILow", "RR 95% CI, Low"),
("RR95CIHigh", "RR 95% CI, High"),
("LR", "Positive Likelihood Ratio (LR)"),
("LR-", "Negative Likelihood Ratio (LR-)"),
("sensitivity","Sensitivity"),
("specificity","Specificity"),
("PPV","Positive Predictive Value (PPV)"),
("NPV","Negative Predictive Value (NPV)"),
("prevalence","Prevalence"),
("P-YatesChi2", "P-value (Yates-Chi2)"),
("P-YatesChi2-NegLog", "P-value (Yates-Chi2), Negative Log"),
("P-Fisher", "P-value (Fisher)"),
("P-Fisher-NegLog", "P-value (Fisher), Negative Log"),
#("P-Fisher-Complement", "P-value (Fisher), Complement (1-p)"),
("nAB", "nAB (query-target co-ocurrences) "),
("nA", "nA (query item instances)"),
("nB", "nB (target item instances)"),
("N", "N (patients)"),
]
optionValues = list()
optionTexts = list()
for (value, text) in optionPairs:
optionValues.append(value)
optionTexts.append(text)
Options.FIELD2VALUE["filterField"] = optionValues
Options.FIELD2TEXT["filterField"] = optionTexts
self.requestData["sortFieldOptions"] = self.optionTagsFromList(
Options.FIELD2VALUE["filterField"],
Options.FIELD2TEXT["filterField"], "PPV")
self.requestData["filterField1Options"] = self.optionTagsFromList(
Options.FIELD2VALUE["filterField"],
Options.FIELD2TEXT["filterField"], "prevalence")
self.requestData["filterField2Options"] = self.optionTagsFromList(
Options.FIELD2VALUE["filterField"],
Options.FIELD2TEXT["filterField"], "PPV")
self.requestData["filterField3Options"] = self.optionTagsFromList(
Options.FIELD2VALUE["filterField"],
Options.FIELD2TEXT["filterField"], "RR")
self.requestData["filterField4Options"] = self.optionTagsFromList(
Options.FIELD2VALUE["filterField"],
Options.FIELD2TEXT["filterField"], "sensitivity")
self.requestData["filterField5Options"] = self.optionTagsFromList(
Options.FIELD2VALUE["filterField"],
Options.FIELD2TEXT["filterField"], "P-YatesChi2")
self.addHandler(self.requestData["WEB_CLASS"],
ItemRecommenderWeb.action_default.__name__)
def __init__(self):
# Super-class init should setup lots of common drop-list data
BaseCPOEWeb.__init__(self)