def test_invalid_suffix_raises_error(self):
suffix = "OB"
with pytest.raises(InvalidSuffix) as error:
Unit.from_suffix(suffix)
assert error.match("Valid suffixes are")
def test_from_b_returns_bytes(self):
suffix = "B"
actual = Unit.from_suffix(suffix)
expected = Unit.BYTES
assert actual == expected
def test_from_gb_returns_giga(self):
suffix = "GB"
actual = Unit.from_suffix(suffix)
expected = Unit.GIGA
assert actual == expected
def test_from_lowercase_mb_returns_mega(self):
suffix = "mb"
actual = Unit.from_suffix(suffix)
expected = Unit.MEGA
assert actual == expected
try:
external_job_id = self._submit_cmd_and_get_external_job_id()
parameters_to_status_script = self._get_parameters_to_status_script(
external_job_id)
OSLayer.print(parameters_to_status_script)
except subprocess.CalledProcessError as error:
raise BsubInvocationError(error)
except AttributeError as error:
raise JobidNotFoundError(error)
if __name__ == "__main__":
workdir = Path().resolve()
config_file = workdir / "lsf.yaml"
if config_file.exists():
with config_file.open() as stream:
lsf_config = Config.from_stream(stream)
else:
lsf_config = Config()
jobscript = sys.argv[-1]
cluster_cmds = sys.argv[1:-1]
memory_units = Unit.from_suffix(CookieCutter.get_lsf_unit_for_limits())
lsf_submit = Submitter(
jobscript=jobscript,
memory_units=memory_units,
lsf_config=lsf_config,
cluster_cmds=cluster_cmds,
)
lsf_submit.submit()