def create_label(input_string):
"""
Clean up a string and create a corresponding (shortened) label.
Parameters
----------
input_string : string
arbitrary string
Returns
-------
output_string : string
stripped input_string
label_string : string
alphanumeric characters of input_string
"""
from mhdb.spreadsheet_io import return_string
from mhdb.spreadsheet_io import convert_string_to_label
if input_string:
if isinstance(input_string, str):
output_string = return_string(input_string,
replace=['"', '\n'],
replace_with=['', ''])
if output_string:
label_string = convert_string_to_label(output_string)
return output_string, label_string
else:
return '', ''
else:
raise Exception('input_string is not a string!')
else:
raise Exception('input_string is None!')
def check_iri(iri, label_type='delimited'):
"""
Function to format IRIs by type, such as <iri> or prefix:iri
Parameters
---------
iri: string
label_type: string
'PascalCase', 'camelCase', or 'delimited'
('delimited' uses '_' delimiters and keeps hyphens)
Removed:
prefixes: set of 2-or-3-tuples
prefixes={("mhdb", "mhdb-states", "mhdb-disorders", "mhdb-resources",
"mhdb-assessments", "mhdb-measures")}
Returns
-------
iri: string
"""
#prefix_strings = {"","_"} if not prefixes else {
# "",
# "_",
# *[prefix[0] for prefix in prefixes]
#}
iri = str(iri).strip()
if ":" in iri and not [x for x in iri if x.isspace()]:
if iri.endswith(":"):
return check_iri(iri[:-1], label_type) #, prefixes)
elif ":/" in iri and \
not iri.startswith('<') and not iri.endswith('>'):
return "<{0}>".format(convert_string_to_label(iri, label_type))
# elif iri.split(":")[0] in prefix_strings:
# return iri
else:
return iri
else:
return ":" + convert_string_to_label(iri, label_type)
def mhdb_iri(label):
"""
Function to prepend "mhdb:" to label or string
Parameter
---------
label: string
Returns
-------
iri: string
"""
return (":".join(["mhdb", convert_string_to_label(label)]))
def write_about_statement(subject, predicate, object, predicates):
"""
Function to write one or more rdf statements in terse triple format.
Parameters
----------
subject: string
subject of this statement
predicate: string
predicate of this statement
object: string
object of this statement
predicates: iterable of 2-tuples
predicate: string
nth property
object: string
nth object
Returns
-------
ttl_string: string
Turtle string
Example
-------
>>> statement = {"duck": {"continues": {"sitting"}}}
>>> predicates = {
... ("source", '"Duck Duck Goose"'),
... ("statementType", "role")
... }
>>> for subject in statement:
... for predicate in statement[subject]:
... for object in statement[subject][predicate]:
... print(len(write_about_statement(
... subject, predicate, object, predicates
... )))
168
"""
return (write_ttl(
"_:{0}".format(
convert_string_to_label("_".join([subject, predicate, object]))),
[("rdf:type", "rdf:Statement"), ("rdf:subject", subject),
("rdf:predicate", predicate), ("rdf:object", object), *predicates]))