def test_metadata_filter_sample_ids_category_unknown_expect_404(self):
with patch('microsetta_public_api.repo._metadata_repo.MetadataRepo.'
'categories', new_callable=PropertyMock) as \
mock_categories:
mock_categories.return_value = ['age_cat', 'bmi']
response, code = filter_sample_ids(some_other_cat='bar')
self.assertEqual(code, 404)
def test_metadata_filter_sample_ids_bmi(self):
with patch.object(MetadataRepo, 'sample_id_matches') as mock_matches, \
patch('microsetta_public_api.repo._metadata_repo.MetadataRepo.'
'categories', new_callable=PropertyMock) as mock_categories:
mock_matches.return_value = ['sample-1', 'sample-3']
mock_categories.return_value = ['bmi']
response, code = filter_sample_ids(bmi='normal')
self.assertEqual(code, 200)
exp = {'sample_ids': ['sample-1', 'sample-3']}
obs = json.loads(response)
self.assertDictEqual(exp, obs)
def test_metadata_filter_sample_ids_taxonomy_filter(self):
with patch.object(MetadataRepo, 'sample_id_matches') as mock_matches, \
patch('microsetta_public_api.repo._metadata_repo.MetadataRepo.'
'categories', new_callable=PropertyMock) as \
mock_categories, \
patch('microsetta_public_api.api.metadata'
'.TaxonomyRepo.exists') as mock_exists, \
patch('microsetta_public_api.api.metadata.validate_resource'
'') as mock_invalid_resource:
mock_matches.return_value = ['sample-1', 'sample-2', 'sample-3']
mock_categories.return_value = ['age_cat']
mock_exists.side_effect = [False, True, True]
mock_invalid_resource.return_value = False
response, code = filter_sample_ids(age_cat='30s', taxonomy='agp')
self.assertEqual(200, code)
exp = {'sample_ids': ['sample-2', 'sample-3']}
obs = json.loads(response)
self.assertDictEqual(exp, obs)