def test_get_version_of_program_nextflow(self):
'''test get_version_of_program nextflow'''
# We don't know what the version might be, so just
# check that we got something that has numbers and dots
got = dependencies.get_version_of_program('nextflow')
self.assertIsNotNone(got)
version_regex = re.compile(r'^[0-9\.]+ build [0-9]+$')
self.assertIsNotNone(version_regex.search(got))
def test_get_version_of_program_dnadiff(self):
"""test get_version_of_program dnadiff"""
# We don't know what the version might be, so just
# check that we got something that has numbers and dots
got = dependencies.get_version_of_program("dnadiff")
self.assertIsNotNone(got)
version_regex = re.compile(r"^[0-9\.]+$")
self.assertIsNotNone(version_regex.search(got))
def test_get_version_of_program_bwa(self):
'''test get_version_of_program bwa'''
# We don't know what the version might be, so just
# check that we got something that looks like X.Y.Z-rxxxxx
got = dependencies.get_version_of_program('bwa')
self.assertIsNotNone(got)
version_regex = re.compile(r'^[0-9]+\.[0-9]+\.[0-9]+.*')
self.assertIsNotNone(version_regex.search(got))
def test_get_version_of_program_gramtools(self):
"""test get_version_of_program gramtools"""
# We don't know what the version might be, so just
# check that we got something that looks like X.Y.Z.
got = dependencies.get_version_of_program("gramtools")
self.assertIsNotNone(got)
version_regex = re.compile(r"^[0-9]+\.[0-9]+\.[0-9]+$")
self.assertIsNotNone(version_regex.search(got))