def test_plot_raw():
"""Test plotting of raw data
"""
import matplotlib.pyplot as plt
raw = _get_raw()
events = _get_events()
plt.close("all") # ensure all are closed
with warnings.catch_warnings(record=True):
fig = raw.plot(events=events, show_options=True)
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.get_axes()[0]
_fake_click(fig, data_ax, [x, y], xform="data") # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform="data") # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
_fake_click(fig, fig.get_axes()[3], [0.5, 0.5]) # open SSP window
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
# sadly these fail when no renderer is used (i.e., when using Agg):
# ssp_fig = set(plt.get_fignums()) - set([fig.number])
# assert_equal(len(ssp_fig), 1)
# ssp_fig = plt.figure(list(ssp_fig)[0])
# ax = ssp_fig.get_axes()[0] # only one axis is used
# t = [c for c in ax.get_children() if isinstance(c,
# matplotlib.text.Text)]
# pos = np.array(t[0].get_position()) + 0.01
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
# test keypresses
fig.canvas.key_press_event("escape")
fig.canvas.key_press_event("down")
fig.canvas.key_press_event("up")
fig.canvas.key_press_event("right")
fig.canvas.key_press_event("left")
fig.canvas.key_press_event("o")
fig.canvas.key_press_event("-")
fig.canvas.key_press_event("+")
fig.canvas.key_press_event("=")
fig.canvas.key_press_event("pageup")
fig.canvas.key_press_event("pagedown")
fig.canvas.key_press_event("home")
fig.canvas.key_press_event("end")
fig.canvas.key_press_event("?")
fig.canvas.key_press_event("f11")
fig.canvas.key_press_event("escape")
# Color setting
assert_raises(KeyError, raw.plot, event_color={0: "r"})
assert_raises(TypeError, raw.plot, event_color={"foo": "r"})
annot = Annotations(
[10, 10 + raw.first_samp / raw.info["sfreq"]], [10, 10], ["test", "test"], raw.info["meas_date"]
)
raw.annotations = annot
fig = plot_raw(raw, events=events, event_color={-1: "r", 998: "b"})
plt.close("all")
def test_plot_raw():
"""Test plotting of raw data
"""
import matplotlib.pyplot as plt
raw = _get_raw()
events = _get_events()
plt.close('all') # ensure all are closed
with warnings.catch_warnings(record=True):
fig = raw.plot(events=events, show_options=True)
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.get_axes()[0]
_fake_click(fig, data_ax, [x, y], xform='data') # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform='data') # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
_fake_click(fig, fig.get_axes()[3], [0.5, 0.5]) # open SSP window
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
# sadly these fail when no renderer is used (i.e., when using Agg):
# ssp_fig = set(plt.get_fignums()) - set([fig.number])
# assert_equal(len(ssp_fig), 1)
# ssp_fig = plt.figure(list(ssp_fig)[0])
# ax = ssp_fig.get_axes()[0] # only one axis is used
# t = [c for c in ax.get_children() if isinstance(c,
# matplotlib.text.Text)]
# pos = np.array(t[0].get_position()) + 0.01
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
# test keypresses
fig.canvas.key_press_event('escape')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.key_press_event('right')
fig.canvas.key_press_event('left')
fig.canvas.key_press_event('o')
fig.canvas.key_press_event('-')
fig.canvas.key_press_event('+')
fig.canvas.key_press_event('=')
fig.canvas.key_press_event('pageup')
fig.canvas.key_press_event('pagedown')
fig.canvas.key_press_event('home')
fig.canvas.key_press_event('end')
fig.canvas.key_press_event('?')
fig.canvas.key_press_event('f11')
fig.canvas.key_press_event('escape')
# Color setting
assert_raises(KeyError, raw.plot, event_color={0: 'r'})
assert_raises(TypeError, raw.plot, event_color={'foo': 'r'})
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
raw.annotations = annot
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
def test_plot_raw():
"""Test plotting of raw data
"""
import matplotlib.pyplot as plt
raw = _get_raw()
events = _get_events()
plt.close('all') # ensure all are closed
with warnings.catch_warnings(record=True):
fig = raw.plot(events=events, show_options=True)
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.get_axes()[0]
_fake_click(fig, data_ax, [x, y], xform='data') # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform='data') # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
_fake_click(fig, fig.get_axes()[3], [0.5, 0.5]) # open SSP window
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
# sadly these fail when no renderer is used (i.e., when using Agg):
# ssp_fig = set(plt.get_fignums()) - set([fig.number])
# assert_equal(len(ssp_fig), 1)
# ssp_fig = plt.figure(list(ssp_fig)[0])
# ax = ssp_fig.get_axes()[0] # only one axis is used
# t = [c for c in ax.get_children() if isinstance(c,
# matplotlib.text.Text)]
# pos = np.array(t[0].get_position()) + 0.01
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
# test keypresses
fig.canvas.key_press_event('escape')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.key_press_event('right')
fig.canvas.key_press_event('left')
fig.canvas.key_press_event('o')
fig.canvas.key_press_event('-')
fig.canvas.key_press_event('+')
fig.canvas.key_press_event('=')
fig.canvas.key_press_event('pageup')
fig.canvas.key_press_event('pagedown')
fig.canvas.key_press_event('home')
fig.canvas.key_press_event('end')
fig.canvas.key_press_event('?')
fig.canvas.key_press_event('f11')
fig.canvas.key_press_event('escape')
# Color setting
assert_raises(KeyError, raw.plot, event_color={0: 'r'})
assert_raises(TypeError, raw.plot, event_color={'foo': 'r'})
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
def test_plot_raw_keypresses(raw):
"""Test keypress interactivity of plot_raw()."""
raw.info['lowpass'] = 10. # allow heavy decim during plotting
fig = raw.plot()
# test twice → once in normal, once in butterfly view.
# NB: keys a, j, and ? are tested in test_plot_raw_child_figures()
keys = ('pagedown', 'down', 'up', 'down', 'right', 'left', '-', '+', '=',
'd', 'd', 'pageup', 'home', 'end', 'z', 'z', 's', 's', 'f11', 'b')
# test for group_by='original'
for key in 2 * keys + ('escape',):
fig.canvas.key_press_event(key)
# test for group_by='selection'
fig = plot_raw(raw, group_by='selection')
for key in 2 * keys + ('escape',):
fig.canvas.key_press_event(key)
def test_plot_raw_keypresses(raw, browser_backend, monkeypatch):
"""Test keypress interactivity of plot_raw()."""
with raw.info._unlock():
raw.info['lowpass'] = 10. # allow heavy decim during plotting
fig = raw.plot()
# test twice → once in normal, once in butterfly view.
# NB: keys a, j, and ? are tested in test_plot_raw_child_figures()
keys = ('pagedown', 'down', 'up', 'down', 'right', 'left', '-', '+', '=',
'd', 'd', 'pageup', 'home', 'end', 'z', 'z', 's', 's', 'f11', 't',
'b')
# Avoid annoying fullscreen issues by monkey-patching our handlers
_monkeypatch_fig(fig, browser_backend)
# test for group_by='original'
for key in 2 * keys + ('escape', ):
fig._fake_keypress(key)
# test for group_by='selection'
fig = plot_raw(raw, group_by='selection')
_monkeypatch_fig(fig, browser_backend)
for key in 2 * keys + ('escape', ):
fig._fake_keypress(key)
def test_plot_raw_traces(raw, events, browser_backend):
"""Test plotting of raw data."""
ismpl = browser_backend.name == 'matplotlib'
with raw.info._unlock():
raw.info['lowpass'] = 10. # allow heavy decim during plotting
fig = raw.plot(events=events, order=[1, 7, 5, 2, 3], n_channels=3,
group_by='original')
assert hasattr(fig, 'mne') # make sure fig.mne param object is present
if ismpl:
assert len(fig.axes) == 5
# setup
x = fig.mne.traces[0].get_xdata()[5]
y = fig.mne.traces[0].get_ydata()[5]
hscroll = fig.mne.ax_hscroll
vscroll = fig.mne.ax_vscroll
# test marking bad channels
label = fig._get_ticklabels('y')[0]
assert label not in fig.mne.info['bads']
# click data to mark bad
fig._fake_click((x, y), xform='data')
assert label in fig.mne.info['bads']
# click data to unmark bad
fig._fake_click((x, y), xform='data')
assert label not in fig.mne.info['bads']
# click name to mark bad
fig._click_ch_name(ch_index=0, button=1)
assert label in fig.mne.info['bads']
# test other kinds of clicks
fig._fake_click((0.5, 0.98)) # click elsewhere (add vline)
assert fig.mne.vline_visible is True
fig._fake_click((0.5, 0.98), button=3) # remove vline
assert fig.mne.vline_visible is False
fig._fake_click((0.5, 0.5), ax=hscroll) # change time
t_start = fig.mne.t_start
fig._fake_click((0.5, 0.5), ax=hscroll) # shouldn't change time this time
assert round(t_start, 6) == round(fig.mne.t_start, 6)
# test scrolling through channels
labels = fig._get_ticklabels('y')
assert labels == [raw.ch_names[1], raw.ch_names[7], raw.ch_names[5]]
fig._fake_click((0.5, 0.05), ax=vscroll) # change channels to end
labels = fig._get_ticklabels('y')
assert labels == [raw.ch_names[5], raw.ch_names[2], raw.ch_names[3]]
for _ in (0, 0):
# first click changes channels to mid; second time shouldn't change
# This needs to be changed for pyqtgraph, because there scrollbars are
# drawn differently (value of slider at lower end, not at middle)
yclick = 0.5 if ismpl else 0.7
fig._fake_click((0.5, yclick), ax=vscroll)
labels = fig._get_ticklabels('y')
assert labels == [raw.ch_names[7], raw.ch_names[5], raw.ch_names[2]]
# test clicking a channel name in butterfly mode
bads = fig.mne.info['bads'].copy()
fig._fake_keypress('b')
fig._click_ch_name(ch_index=0, button=1) # should be no-op
assert fig.mne.info['bads'] == bads # unchanged
fig._fake_keypress('b')
# test starting up in zen mode
fig = plot_raw(raw, show_scrollbars=False)
# test order, title, & show_options kwargs
with pytest.raises(ValueError, match='order should be array-like; got'):
raw.plot(order='foo')
with pytest.raises(TypeError, match='title must be None or a string, got'):
raw.plot(title=1)
raw.plot(show_options=True)
browser_backend._close_all()
# annotations outside data range
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
# Color setting
with pytest.raises(KeyError, match='must be strictly positive, or -1'):
raw.plot(event_color={0: 'r'})
with pytest.raises(TypeError, match='event_color key must be an int, got'):
raw.plot(event_color={'foo': 'r'})
plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
def test_plot_raw():
"""Test plotting of raw data."""
raw = _get_raw()
raw.info['lowpass'] = 10. # allow heavy decim during plotting
events = _get_events()
plt.close('all') # ensure all are closed
assert len(plt.get_fignums()) == 0
fig = raw.plot(events=events, order=[1, 7, 3], group_by='original')
assert len(plt.get_fignums()) == 1
# make sure fig._mne_params is present
assert isinstance(fig._mne_params, dict)
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.axes[0]
_fake_click(fig, data_ax, [x, y], xform='data') # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform='data') # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
assert len(plt.get_fignums()) == 1
# open SSP window
_fake_click(fig, fig.get_axes()[-1], [0.5, 0.5])
_fake_click(fig, fig.get_axes()[-1], [0.5, 0.5], kind='release')
assert len(plt.get_fignums()) == 2
ssp_fig = plt.figure(plt.get_fignums()[-1])
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
ax = ssp_fig.get_axes()[0] # only one axis is used
assert _proj_status(ax) == [True] * 3
t = [c for c in ax.get_children() if isinstance(c, matplotlib.text.Text)]
pos = np.array(t[0].get_position()) + 0.01
_fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
assert _proj_status(ax) == [False, True, True]
_fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
assert _proj_status(ax) == [True] * 3
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5]) # all off
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5], kind='release')
assert _proj_status(ax) == [False] * 3
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5]) # all on
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5], kind='release')
assert _proj_status(ax) == [True] * 3
# test keypresses
# test for group_by='original'
for key in [
'down', 'up', 'right', 'left', 'o', '-', '+', '=', 'd', 'd',
'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'z', 'escape'
]:
fig.canvas.key_press_event(key)
# test for group_by='selection'
fig = plot_raw(raw, events=events, group_by='selection')
for key in [
'b', 'down', 'up', 'right', 'left', 'o', '-', '+', '=', 'd', 'd',
'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'b', 'z', 'escape'
]:
fig.canvas.key_press_event(key)
# test zen mode
fig = plot_raw(raw, show_scrollbars=False)
# Color setting
pytest.raises(KeyError, raw.plot, event_color={0: 'r'})
pytest.raises(TypeError, raw.plot, event_color={'foo': 'r'})
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
for group_by, order in zip(
['position', 'selection'],
[np.arange(len(raw.ch_names))[::-3], [1, 2, 4, 6]]):
with pytest.warns(None): # sometimes projection
fig = raw.plot(group_by=group_by, order=order)
x = fig.get_axes()[0].lines[1].get_xdata()[10]
y = fig.get_axes()[0].lines[1].get_ydata()[10]
with pytest.warns(None): # old mpl (at least 2.0) can warn
_fake_click(fig, data_ax, [x, y], xform='data') # mark bad
fig.canvas.key_press_event('down') # change selection
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
sel_fig = plt.figure(1)
topo_ax = sel_fig.axes[1]
_fake_click(sel_fig, topo_ax, [-0.425, 0.20223853], xform='data')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.scroll_event(0.5, 0.5, -1) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 1) # scroll up
_fake_click(sel_fig, topo_ax, [-0.5, 0.], xform='data')
_fake_click(sel_fig, topo_ax, [0.5, 0.], xform='data', kind='motion')
_fake_click(sel_fig, topo_ax, [0.5, 0.5], xform='data', kind='motion')
_fake_click(sel_fig,
topo_ax, [-0.5, 0.5],
xform='data',
kind='release')
plt.close('all')
# test if meas_date has only one element
raw.info['meas_date'] = (raw.info['meas_date'][0], 0)
annot = Annotations([1 + raw.first_samp / raw.info['sfreq']], [5], ['bad'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
with pytest.warns(None): # sometimes projection
raw.plot(group_by='position', order=np.arange(8))
for fig_num in plt.get_fignums():
fig = plt.figure(fig_num)
if hasattr(fig, 'radio'): # Get access to selection fig.
break
for key in ['down', 'up', 'escape']:
fig.canvas.key_press_event(key)
plt.close('all')
def test_plot_raw():
"""Test plotting of raw data."""
import matplotlib.pyplot as plt
raw = _get_raw()
raw.info['lowpass'] = 10. # allow heavy decim during plotting
events = _get_events()
plt.close('all') # ensure all are closed
with warnings.catch_warnings(record=True):
fig = raw.plot(events=events,
show_options=True,
order=[1, 7, 3],
group_by='original')
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.axes[0]
_fake_click(fig, data_ax, [x, y], xform='data') # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform='data') # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
_fake_click(fig, fig.get_axes()[3], [0.5, 0.5]) # open SSP window
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
# sadly these fail when no renderer is used (i.e., when using Agg):
# ssp_fig = set(plt.get_fignums()) - set([fig.number])
# assert_equal(len(ssp_fig), 1)
# ssp_fig = plt.figure(list(ssp_fig)[0])
# ax = ssp_fig.get_axes()[0] # only one axis is used
# t = [c for c in ax.get_children() if isinstance(c,
# matplotlib.text.Text)]
# pos = np.array(t[0].get_position()) + 0.01
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
# test keypresses
for key in [
'down', 'up', 'right', 'left', 'o', '-', '+', '=', 'pageup',
'pagedown', 'home', 'end', '?', 'f11', 'escape'
]:
fig.canvas.key_press_event(key)
fig = plot_raw(raw, events=events, group_by='selection')
for key in [
'b', 'down', 'up', 'right', 'left', 'o', '-', '+', '=',
'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'b', 'escape'
]:
fig.canvas.key_press_event(key)
# Color setting
assert_raises(KeyError, raw.plot, event_color={0: 'r'})
assert_raises(TypeError, raw.plot, event_color={'foo': 'r'})
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
raw.annotations = annot
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
for group_by, order in zip(
['position', 'selection'],
[np.arange(len(raw.ch_names))[::-3], [1, 2, 4, 6]]):
fig = raw.plot(group_by=group_by, order=order)
x = fig.get_axes()[0].lines[1].get_xdata()[10]
y = fig.get_axes()[0].lines[1].get_ydata()[10]
_fake_click(fig, data_ax, [x, y], xform='data') # mark bad
fig.canvas.key_press_event('down') # change selection
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
sel_fig = plt.figure(1)
topo_ax = sel_fig.axes[1]
_fake_click(sel_fig, topo_ax, [-0.425, 0.20223853], xform='data')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.scroll_event(0.5, 0.5, -1) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 1) # scroll up
_fake_click(sel_fig, topo_ax, [-0.5, 0.], xform='data')
_fake_click(sel_fig,
topo_ax, [0.5, 0.],
xform='data',
kind='motion')
_fake_click(sel_fig,
topo_ax, [0.5, 0.5],
xform='data',
kind='motion')
_fake_click(sel_fig,
topo_ax, [-0.5, 0.5],
xform='data',
kind='release')
plt.close('all')
# test if meas_date has only one element
raw.info['meas_date'] = np.array([raw.info['meas_date'][0]],
dtype=np.int32)
raw.annotations = Annotations([1 + raw.first_samp / raw.info['sfreq']],
[5], ['bad'])
raw.plot(group_by='position', order=np.arange(8))
for fig_num in plt.get_fignums():
fig = plt.figure(fig_num)
if hasattr(fig, 'radio'): # Get access to selection fig.
break
for key in ['down', 'up', 'escape']:
fig.canvas.key_press_event(key)
plt.close('all')
def test_plot_raw_traces(raw):
"""Test plotting of raw data."""
raw.info['lowpass'] = 10. # allow heavy decim during plotting
events = _get_events()
plt.close('all') # ensure all are closed
fig = raw.plot(events=events, order=[1, 7, 5, 2, 3], n_channels=3,
group_by='original')
assert hasattr(fig, 'mne') # make sure fig.mne param object is present
assert len(fig.axes) == 5
# setup
x = fig.mne.traces[0].get_xdata()[5]
y = fig.mne.traces[0].get_ydata()[5]
data_ax = fig.mne.ax_main
hscroll = fig.mne.ax_hscroll
vscroll = fig.mne.ax_vscroll
# test marking bad channels
label = fig.mne.ax_main.get_yticklabels()[0].get_text()
assert label not in fig.mne.info['bads']
_fake_click(fig, data_ax, [x, y], xform='data') # click data to mark bad
assert label in fig.mne.info['bads']
_fake_click(fig, data_ax, [x, y], xform='data') # click data to unmark bad
assert label not in fig.mne.info['bads']
_click_ch_name(fig, ch_index=0, button=1) # click name to mark bad
assert label in fig.mne.info['bads']
# test other kinds of clicks
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere (add vline)
_fake_click(fig, data_ax, [0.5, 0.999], button=3) # remove vline
_fake_click(fig, hscroll, [0.5, 0.5]) # change time
_fake_click(fig, hscroll, [0.5, 0.5]) # shouldn't change time this time
# test scrolling through channels
labels = [label.get_text() for label in data_ax.get_yticklabels()]
assert labels == [raw.ch_names[1], raw.ch_names[7], raw.ch_names[5]]
_fake_click(fig, vscroll, [0.5, 0.01]) # change channels to end
labels = [label.get_text() for label in data_ax.get_yticklabels()]
assert labels == [raw.ch_names[5], raw.ch_names[2], raw.ch_names[3]]
for _ in (0, 0):
# first click changes channels to mid; second time shouldn't change
_fake_click(fig, vscroll, [0.5, 0.5])
labels = [label.get_text() for label in data_ax.get_yticklabels()]
assert labels == [raw.ch_names[7], raw.ch_names[5], raw.ch_names[2]]
assert len(plt.get_fignums()) == 1
# test clicking a channel name in butterfly mode
bads = fig.mne.info['bads'].copy()
fig.canvas.key_press_event('b')
_click_ch_name(fig, ch_index=0, button=1) # should be no-op
assert fig.mne.info['bads'] == bads # unchanged
fig.canvas.key_press_event('b')
# test starting up in zen mode
fig = plot_raw(raw, show_scrollbars=False)
# test order, title, & show_options kwargs
with pytest.raises(ValueError, match='order should be array-like; got'):
raw.plot(order='foo')
with pytest.raises(TypeError, match='title must be None or a string, got'):
raw.plot(title=1)
raw.plot(show_options=True)
plt.close('all')
# Color setting
with pytest.raises(KeyError, match='must be strictly positive, or -1'):
raw.plot(event_color={0: 'r'})
with pytest.raises(TypeError, match='event_color key must be an int, got'):
raw.plot(event_color={'foo': 'r'})
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
for group_by, order in zip(['position', 'selection'],
[np.arange(len(raw.ch_names))[::-3],
[1, 2, 4, 6]]):
fig = raw.plot(group_by=group_by, order=order)
x = fig.get_axes()[0].lines[1].get_xdata()[10]
y = fig.get_axes()[0].lines[1].get_ydata()[10]
_fake_click(fig, data_ax, [x, y], xform='data') # mark bad
fig.canvas.key_press_event('down') # change selection
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
sel_fig = plt.figure(1)
topo_ax = sel_fig.axes[1]
_fake_click(sel_fig, topo_ax, [-0.425, 0.20223853],
xform='data')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.scroll_event(0.5, 0.5, -1) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 1) # scroll up
_fake_click(sel_fig, topo_ax, [-0.5, 0.], xform='data')
_fake_click(sel_fig, topo_ax, [0.5, 0.], xform='data',
kind='motion')
_fake_click(sel_fig, topo_ax, [0.5, 0.5], xform='data',
kind='motion')
_fake_click(sel_fig, topo_ax, [-0.5, 0.5], xform='data',
kind='release')
plt.close('all')
# test if meas_date is off
raw.set_meas_date(_dt_to_stamp(raw.info['meas_date'])[0])
annot = Annotations([1 + raw.first_samp / raw.info['sfreq']],
[5], ['bad'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
with pytest.warns(None): # sometimes projection
raw.plot(group_by='position', order=np.arange(8))
for fig_num in plt.get_fignums():
fig = plt.figure(fig_num)
if hasattr(fig, 'radio'): # Get access to selection fig.
break
for key in ['down', 'up', 'escape']:
fig.canvas.key_press_event(key)
raw._data[:] = np.nan
# this should (at least) not die, the output should pretty clearly show
# that there is a problem so probably okay to just plot something blank
with pytest.warns(None):
raw.plot(scalings='auto')
plt.close('all')
def test_plot_raw():
"""Test plotting of raw data."""
import matplotlib.pyplot as plt
raw = _get_raw()
raw.info['lowpass'] = 10. # allow heavy decim during plotting
events = _get_events()
plt.close('all') # ensure all are closed
with warnings.catch_warnings(record=True):
fig = raw.plot(events=events, show_options=True, order=[1, 7, 3],
group_by='original')
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.axes[0]
_fake_click(fig, data_ax, [x, y], xform='data') # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform='data') # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
_fake_click(fig, fig.get_axes()[3], [0.5, 0.5]) # open SSP window
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
# sadly these fail when no renderer is used (i.e., when using Agg):
# ssp_fig = set(plt.get_fignums()) - set([fig.number])
# assert_equal(len(ssp_fig), 1)
# ssp_fig = plt.figure(list(ssp_fig)[0])
# ax = ssp_fig.get_axes()[0] # only one axis is used
# t = [c for c in ax.get_children() if isinstance(c,
# matplotlib.text.Text)]
# pos = np.array(t[0].get_position()) + 0.01
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
# _fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
# test keypresses
for key in ['down', 'up', 'right', 'left', 'o', '-', '+', '=',
'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'escape']:
fig.canvas.key_press_event(key)
fig = plot_raw(raw, events=events, group_by='selection')
for key in ['b', 'down', 'up', 'right', 'left', 'o', '-', '+', '=',
'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'b',
'escape']:
fig.canvas.key_press_event(key)
# Color setting
assert_raises(KeyError, raw.plot, event_color={0: 'r'})
assert_raises(TypeError, raw.plot, event_color={'foo': 'r'})
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
raw.annotations = annot
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
for group_by, order in zip(['position', 'selection'],
[np.arange(len(raw.ch_names))[::-3],
[1, 2, 4, 6]]):
fig = raw.plot(group_by=group_by, order=order)
x = fig.get_axes()[0].lines[1].get_xdata()[10]
y = fig.get_axes()[0].lines[1].get_ydata()[10]
_fake_click(fig, data_ax, [x, y], xform='data') # mark bad
fig.canvas.key_press_event('down') # change selection
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
sel_fig = plt.figure(1)
topo_ax = sel_fig.axes[1]
_fake_click(sel_fig, topo_ax, [-0.425, 0.20223853],
xform='data')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.scroll_event(0.5, 0.5, -1) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 1) # scroll up
_fake_click(sel_fig, topo_ax, [-0.5, 0.], xform='data')
_fake_click(sel_fig, topo_ax, [0.5, 0.], xform='data',
kind='motion')
_fake_click(sel_fig, topo_ax, [0.5, 0.5], xform='data',
kind='motion')
_fake_click(sel_fig, topo_ax, [-0.5, 0.5], xform='data',
kind='release')
plt.close('all')
# test if meas_date has only one element
raw.info['meas_date'] = np.array([raw.info['meas_date'][0]],
dtype=np.int32)
raw.annotations = Annotations([1 + raw.first_samp / raw.info['sfreq']],
[5], ['bad'])
raw.plot(group_by='position', order=np.arange(8))
for fig_num in plt.get_fignums():
fig = plt.figure(fig_num)
if hasattr(fig, 'radio'): # Get access to selection fig.
break
for key in ['down', 'up', 'escape']:
fig.canvas.key_press_event(key)
plt.close('all')
def test_plot_raw_traces(raw, events, browse_backend):
"""Test plotting of raw data."""
raw.info['lowpass'] = 10. # allow heavy decim during plotting
fig = raw.plot(events=events,
order=[1, 7, 5, 2, 3],
n_channels=3,
group_by='original')
assert hasattr(fig, 'mne') # make sure fig.mne param object is present
assert len(fig.axes) == 5
# setup
x = fig.mne.traces[0].get_xdata()[5]
y = fig.mne.traces[0].get_ydata()[5]
data_ax = fig.mne.ax_main
# ToDo: The interaction with scrollbars will be different in pyqtgraph.
hscroll = fig.mne.ax_hscroll
vscroll = fig.mne.ax_vscroll
# test marking bad channels
label = fig.mne.ax_main.get_yticklabels()[0].get_text()
assert label not in fig.mne.info['bads']
# click data to mark bad
fig._fake_click((x, y), xform='data')
assert label in fig.mne.info['bads']
# click data to unmark bad
fig._fake_click((x, y), xform='data')
assert label not in fig.mne.info['bads']
# click name to mark bad
fig._click_ch_name(ch_index=0, button=1)
assert label in fig.mne.info['bads']
# test other kinds of clicks
fig._fake_click((0.5, 0.999)) # click elsewhere (add vline)
fig._fake_click((0.5, 0.999), button=3) # remove vline
fig._fake_click((0.5, 0.5), ax=hscroll) # change time
fig._fake_click((0.5, 0.5), ax=hscroll) # shouldn't change time this time
# test scrolling through channels
labels = [label.get_text() for label in data_ax.get_yticklabels()]
assert labels == [raw.ch_names[1], raw.ch_names[7], raw.ch_names[5]]
fig._fake_click((0.5, 0.01), ax=vscroll) # change channels to end
labels = [label.get_text() for label in data_ax.get_yticklabels()]
assert labels == [raw.ch_names[5], raw.ch_names[2], raw.ch_names[3]]
for _ in (0, 0):
# first click changes channels to mid; second time shouldn't change
fig._fake_click((0.5, 0.5), ax=vscroll)
labels = [label.get_text() for label in data_ax.get_yticklabels()]
assert labels == [raw.ch_names[7], raw.ch_names[5], raw.ch_names[2]]
assert browse_backend._get_n_figs() == 1
# test clicking a channel name in butterfly mode
bads = fig.mne.info['bads'].copy()
fig._fake_keypress('b')
fig._click_ch_name(ch_index=0, button=1) # should be no-op
assert fig.mne.info['bads'] == bads # unchanged
fig._fake_keypress('b')
# test starting up in zen mode
fig = plot_raw(raw, show_scrollbars=False)
# test order, title, & show_options kwargs
with pytest.raises(ValueError, match='order should be array-like; got'):
raw.plot(order='foo')
with pytest.raises(TypeError, match='title must be None or a string, got'):
raw.plot(title=1)
raw.plot(show_options=True)
browse_backend._close_all()
# annotations outside data range
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
# Color setting
with pytest.raises(KeyError, match='must be strictly positive, or -1'):
raw.plot(event_color={0: 'r'})
with pytest.raises(TypeError, match='event_color key must be an int, got'):
raw.plot(event_color={'foo': 'r'})
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
browse_backend._close_all()
def test_plot_raw():
"""Test plotting of raw data."""
raw = _get_raw()
raw.info['lowpass'] = 10. # allow heavy decim during plotting
events = _get_events()
plt.close('all') # ensure all are closed
assert len(plt.get_fignums()) == 0
fig = raw.plot(events=events, order=[1, 7, 3], group_by='original')
assert len(plt.get_fignums()) == 1
# test mouse clicks
x = fig.get_axes()[0].lines[1].get_xdata().mean()
y = fig.get_axes()[0].lines[1].get_ydata().mean()
data_ax = fig.axes[0]
_fake_click(fig, data_ax, [x, y], xform='data') # mark a bad channel
_fake_click(fig, data_ax, [x, y], xform='data') # unmark a bad channel
_fake_click(fig, data_ax, [0.5, 0.999]) # click elsewhere in 1st axes
_fake_click(fig, data_ax, [-0.1, 0.9]) # click on y-label
_fake_click(fig, fig.get_axes()[1], [0.5, 0.5]) # change time
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
assert len(plt.get_fignums()) == 1
# open SSP window
_fake_click(fig, fig.get_axes()[-1], [0.5, 0.5])
_fake_click(fig, fig.get_axes()[-1], [0.5, 0.5], kind='release')
assert len(plt.get_fignums()) == 2
ssp_fig = plt.figure(plt.get_fignums()[-1])
fig.canvas.button_press_event(1, 1, 1) # outside any axes
fig.canvas.scroll_event(0.5, 0.5, -0.5) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 0.5) # scroll up
ax = ssp_fig.get_axes()[0] # only one axis is used
assert _proj_status(ax) == [True] * 3
t = [c for c in ax.get_children() if isinstance(c, matplotlib.text.Text)]
pos = np.array(t[0].get_position()) + 0.01
_fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # off
assert _proj_status(ax) == [False, True, True]
_fake_click(ssp_fig, ssp_fig.get_axes()[0], pos, xform='data') # on
assert _proj_status(ax) == [True] * 3
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5]) # all off
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5], kind='release')
assert _proj_status(ax) == [False] * 3
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5]) # all on
_fake_click(ssp_fig, ssp_fig.get_axes()[1], [0.5, 0.5], kind='release')
assert _proj_status(ax) == [True] * 3
# test keypresses
# test for group_by='original'
for key in ['down', 'up', 'right', 'left', 'o', '-', '+', '=', 'd', 'd',
'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'escape']:
fig.canvas.key_press_event(key)
# test for group_by='selection'
fig = plot_raw(raw, events=events, group_by='selection')
for key in ['b', 'down', 'up', 'right', 'left', 'o', '-', '+', '=', 'd',
'd', 'pageup', 'pagedown', 'home', 'end', '?', 'f11', 'b',
'escape']:
fig.canvas.key_press_event(key)
# Color setting
pytest.raises(KeyError, raw.plot, event_color={0: 'r'})
pytest.raises(TypeError, raw.plot, event_color={'foo': 'r'})
annot = Annotations([10, 10 + raw.first_samp / raw.info['sfreq']],
[10, 10], ['test', 'test'], raw.info['meas_date'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
fig = plot_raw(raw, events=events, event_color={-1: 'r', 998: 'b'})
plt.close('all')
for group_by, order in zip(['position', 'selection'],
[np.arange(len(raw.ch_names))[::-3],
[1, 2, 4, 6]]):
with pytest.warns(None): # sometimes projection
fig = raw.plot(group_by=group_by, order=order)
x = fig.get_axes()[0].lines[1].get_xdata()[10]
y = fig.get_axes()[0].lines[1].get_ydata()[10]
_fake_click(fig, data_ax, [x, y], xform='data') # mark bad
fig.canvas.key_press_event('down') # change selection
_fake_click(fig, fig.get_axes()[2], [0.5, 0.5]) # change channels
sel_fig = plt.figure(1)
topo_ax = sel_fig.axes[1]
_fake_click(sel_fig, topo_ax, [-0.425, 0.20223853],
xform='data')
fig.canvas.key_press_event('down')
fig.canvas.key_press_event('up')
fig.canvas.scroll_event(0.5, 0.5, -1) # scroll down
fig.canvas.scroll_event(0.5, 0.5, 1) # scroll up
_fake_click(sel_fig, topo_ax, [-0.5, 0.], xform='data')
_fake_click(sel_fig, topo_ax, [0.5, 0.], xform='data',
kind='motion')
_fake_click(sel_fig, topo_ax, [0.5, 0.5], xform='data',
kind='motion')
_fake_click(sel_fig, topo_ax, [-0.5, 0.5], xform='data',
kind='release')
plt.close('all')
# test if meas_date has only one element
raw.info['meas_date'] = (raw.info['meas_date'][0], 0)
annot = Annotations([1 + raw.first_samp / raw.info['sfreq']],
[5], ['bad'])
with pytest.warns(RuntimeWarning, match='outside data range'):
raw.set_annotations(annot)
with pytest.warns(None): # sometimes projection
raw.plot(group_by='position', order=np.arange(8))
for fig_num in plt.get_fignums():
fig = plt.figure(fig_num)
if hasattr(fig, 'radio'): # Get access to selection fig.
break
for key in ['down', 'up', 'escape']:
fig.canvas.key_press_event(key)
plt.close('all')
def preprocess(self): # 预处理步骤：静息态数据截取->49-51Hz陷波滤波->ICA滤波
plot_raw(self.raw_data)
QMessageBox.information(self, '消息', '数据预处理完成', QMessageBox.Ok)
