# coding: utf-8
# author: LiuChen
from neural_network import *
from mnist import MNIST
from data_tools import *
# 加载mnist数据集
mnistdata = MNIST('./mnist_dataset')
mnistdata.gz = True
train_dev_set = mnistdata.load_training()
test_set = mnistdata.load_testing()
# 训练集
train_x = train_dev_set[0][:55000]
train_y = train_dev_set[1][:55000]
train_y = one_hot(train_y)
# 验证集
dev_x = train_dev_set[0][55000:]
dev_y = train_dev_set[1][55000:]
dev_y = one_hot(dev_y)
# 测试集
test_x = test_set[0]
test_y = test_set[1]
test_y = one_hot(test_y)
# 神经网络结构定义
network = FCNetwork(lmd=0.1) # 学习率
act_fun = Relu # 隐含层激活函数，Sigmoid、Tanh 或 Relu
# 输入层
def get_testing_files(path):
mndata = MNIST(path)
mndata.gz = True
return mndata.load_testing()
import pylab as pl
import random as rand
import collections
import numpy as np
from mnist import MNIST
from sklearn.externals import joblib
from sklearn.metrics import accuracy_score
from sklearn.metrics import confusion_matrix
from sklearn.neighbors import KNeighborsClassifier
from sklearn.discriminant_analysis import LinearDiscriminantAnalysis
mndata = MNIST('data')
mndata.gz = True
def training(mndata): # function that returns the train data
images, labels = mndata.load_training()
#index = rand.randrange(0, len(images))
#print(mndata.display(images[index]))
#print(labels[index])
Train = collections.namedtuple('Train', ['images', 'labels'])
return Train(images, labels)
def testing(mndata): # function that returns the test data
images, labels = mndata.load_testing()
dJ_dZ = (self.layers[1].weights.T @ dJ_dZ) * self.act_prime(
self.layers[0].outputs)
self.layers[0].dJ_dW = dJ_dZ @ inputs[i].reshape(1, -1)
self.layers[0].dJ_dB = dJ_dZ
# adjust all weights and biases
for layer in self.layers:
layer.weights -= learn_rate * layer.dJ_dW
layer.biases -= learn_rate * layer.dJ_dB
if __name__ == "__main__":
# ----------------------------------------Handwritten Digits----------------------------------------------- #
# load MNIST dataset
mn_data = MNIST('./MNIST')
mn_data.gz = True
mn_images, mn_labels = mn_data.load_training()
# normalise image data from 0-255 to 0.01 to 1
images_array = (np.array(mn_images) / 255.0 * 0.99) + 0.01
# convert labels into array of 10 elements with all zeros while the labeled element is replaced by 1
labels_list = []
for label in mn_labels:
empty = np.full(10, 0.01)
empty[label] = 0.99
labels_list.append(empty)
labels_array = np.array(labels_list)
# instantiate Neural Network
my_ANN = NeuralNetwork(input_nodes=784,
[np.argmax(test_alpha[i, :]) for i in range(len(test_alpha))])
return sum(int(i == j) for (i, j) in zip(test_result, y))
def save_model(self, dstFile1, dstFile2):
'''
保存model的weights和bias,dstFile1保存偏置,dstFile2保存权重
'''
np.save(dstFile1, self.bias)
np.save(dstFile2, self.weights)
return None
if __name__ == '__main__':
#载入数据集
mdata = MNIST()
mdata.gz = True
train_images, train_labels = mdata.load_training()
test_images, test_labels = mdata.load_testing()
'''
tuple形式
train_data[0]为训练图片 shape(60000,784)
train_data[1]为训练图片的标签 shape(60000,)
test_data[0]为测试图片 shape(10000,784)
test_data[1]为测试图片的标签 shape(10000,)
'''
train_data = [np.array(train_images), np.array(train_labels)]
test_data = [np.array(test_images), np.array(test_labels)]
model = DRNN(np.array([784, 30, 10]))
#model.SBGD(train_data,test_data,epochs=30,batch_size=5,eta=0.05,cost='cross_entropy')
model.SBGD(train_data, test_data, epochs=50, batch_size=10, eta=0.05)
#model.save_model('bias.npy','weights.npy')
def train(save_model_path, mnist_data_path='mnist_data', print_accuracy=False):
# Dear course team,
#
# In this homework I used 2 models:
# the first one is a Random Forest, trained on MNIST. It predicts the
# probabilities for each digit in sudoku square.
# Then, the second model - another Random Forest - is trained using those probabilities as the features and
# the right digits as the answers, on all train images.
# The first model:
fix_seed(SEED)
mnist_data = MNIST(mnist_data_path)
mnist_data.gz = True
images_train, labels_train = mnist_data.load_training()
images_test, labels_test = mnist_data.load_testing()
images_train = np.uint8(
[np.reshape(im, (MNIST_CELL_SIZE, ) * 2) for im in images_train])
images_test = np.uint8(
[np.reshape(im, (MNIST_CELL_SIZE, ) * 2) for im in images_test])
labels_train, labels_test = np.int16(labels_train), np.int16(labels_test)
hhog = lambda image: hog(image,
orientations=8,
pixels_per_cell=(8, 8),
cells_per_block=(3, 3),
visualize=False,
multichannel=False)
features_train = np.array([hhog(im) for im in images_train])
features_test = np.array([hhog(im) for im in images_test])
# features_train = np.array([im.ravel() for im in images_train])
# features_test = np.array([im.ravel() for im in images_test])
# rf = RandomForestClassifier(n_estimators=100, n_jobs=-1, random_state=SEED)
rf = XGBClassifier(n_estimators=100, n_jobs=-1, random_state=SEED)
rf.fit(features_train, labels_train)
model_fname = 'random_forest.joblib'
joblib.dump(rf, Path(save_model_path) / model_fname)
print_accuracy = True
if print_accuracy:
from sklearn.metrics import accuracy_score
print(accuracy_score(labels_test, rf.predict(features_test)))
# The second model:
prefix = '/autograder/source/train/'
# prefix = ''
images_arr = [
prefix + 'train_0.jpg', prefix + 'train_2.jpg', prefix + 'train_3.jpg',
prefix + 'train_4.jpg', prefix + 'train_6.jpg', prefix + 'train_7.jpg',
prefix + 'train_8.jpg'
]
truth_arr = [
[
5, 3, 6, 5, 1, 4, 3, 4, 8, 7, 2, 6, 8, 6, 2, 9, 5, 9, 3, 4, 2, 9,
5, 6, 8, 1, 5, 6, 1, 8, 4, 7, 5
], # 0
[
1, 7, 8, 6, 5, 1, 2, 6, 5, 2, 7, 3, 5, 9, 2, 8, 1, 4, 9, 7, 1, 6,
8, 4, 7, 1, 5, 6, 9, 7, 6
], # 2.1
[
8, 3, 4, 8, 9, 3, 7, 4, 2, 3, 4, 7, 5, 7, 6, 4, 7, 8, 6, 9, 5, 4,
1, 5, 9, 5, 1, 6, 5, 9, 4, 8, 3
], # 2.2
[
2, 9, 3, 5, 7, 4, 9, 5, 6, 2, 9, 3, 2, 1, 8, 1, 9, 4, 6, 3, 5, 2,
4, 3, 7, 6, 8, 3, 7, 4, 1, 9
], # 3
[
6, 5, 1, 6, 5, 8, 3, 5, 9, 4, 3, 6, 2, 1, 5, 7, 3, 9, 1, 5, 5, 8,
6, 5, 9, 4, 2, 1, 5, 8, 6, 1, 6, 2, 5
], # 4
[
7, 5, 9, 1, 3, 4, 2, 3, 8, 5, 2, 9, 3, 6, 7, 2, 9, 8, 1, 2, 4, 6,
3, 3, 6, 5, 3, 1
], # 6
[
9, 7, 8, 1, 1, 9, 8, 6, 5, 7, 2, 5, 3, 9, 7, 8, 6, 2, 6, 1, 9, 7,
8, 4, 1, 5, 2, 4, 8, 7, 2, 9, 3, 9, 5, 4, 7, 2, 1, 7, 4
], # 7
[
4, 5, 7, 6, 5, 6, 3, 2, 1, 5, 1, 9, 8, 6, 7, 4, 8, 4, 3, 6, 6, 4,
7, 1, 2, 8, 3, 1, 5, 4, 7, 1, 8, 3, 4, 7
]
] # 8
truths, pred_probas = [], []
for truth in truth_arr:
truths.append(truth)
truths = np.hstack(truths)
for i, fname in enumerate(images_arr):
image = cv2.imread(fname)
image = cv2.cvtColor(image, cv2.COLOR_BGR2GRAY)
image = io.imread(fname, as_gray=True)
image_full = image
mask, corners = mask_image(image_full)
images_warped, tforms = normalize_image(image_full)
sudoku_digits = []
for image_warped in images_warped:
pred_square, pred_proba, flag, cells, _ = detect_digits(
image_warped, rf, get_templates=False)
pred_probas.append(pred_proba)
pred_probas = np.vstack(pred_probas)
# rf2 = RandomForestClassifier(n_estimators=50, n_jobs=-1, random_state=666)
rf2 = XGBClassifier(n_estimators=50, n_jobs=-1, random_state=666)
rf2.fit(pred_probas, truths)
model_fname = 'random_forest2.joblib'
joblib.dump(rf2, Path(save_model_path) / model_fname)
parser.error("training size must be in domain (0,60000]!")
if args.training_size > 10000:
parser.error("evaluate size must be in domain (0,10000]!")
if args.gpu:
tf.logging.info('Using GPU - setting threads to 1')
args.num_thread = 1
tf.logging.info('Running with threads({})'.format(args.num_thread))
tf.logging.info(
'Parameters: epoch({}), batch-size({}), training-rate({:f}), training-size({}), evaluate-size({})'
.format(args.epoch, args.batch_size, args.training_rate,
args.training_size, args.evaluate_size))
# Get data
mndata = MNIST(args.mnistpath, return_type='numpy')
mndata.gz = args.mnist_gzip
train_images, train_labels_raw = mndata.load_training()
test_images, test_labels_raw = mndata.load_testing()
train_labels = one_hot_encode(train_labels_raw)
test_labels = one_hot_encode(test_labels_raw)
tf.logging.info('Loaded data')
# set TF settings
sesscfg = tf.ConfigProto()
sesscfg.log_device_placement = False
sesscfg.intra_op_parallelism_threads = args.num_thread
sesscfg.inter_op_parallelism_threads = args.num_thread
sesscfg.device_count['GPU'] = args.gpu
sesscfg.graph_options.optimizer_options.global_jit_level = tf.OptimizerOptions.ON_1
cnn_graph, img, lab, out, pred, loss, opt = cnn_train(args.training_rate)
def load_data(self, get_first: bool = False):
"""Load all the unpacked data into numpy arrays.
Args:
get_first (bool): Download and unpack data first.
"""
if get_first:
self.get_data()
dtype = 'balanced' if self.balanced else 'byclass'
idx_paths = [
(
os.path.join(self.data_path, 'gzip',
f'emnist-{dtype}-train-images-idx3-ubyte'),
os.path.join(self.data_path, 'gzip',
f'emnist-{dtype}-train-labels-idx1-ubyte'),
),
(
os.path.join(self.data_path, 'gzip',
f'emnist-{dtype}-test-images-idx3-ubyte'),
os.path.join(self.data_path, 'gzip',
f'emnist-{dtype}-test-labels-idx1-ubyte'),
)
]
mapping = []
with open(os.path.join(self.data_path, 'gzip',
f'emnist-{dtype}-mapping.txt'),
mode='r') as lm:
for line in lm:
mapping.append(chr(int(line.split()[1])))
mndata = MNIST(os.path.join(self.data_path, 'gzip'))
mndata.gz = True
print("\n[~] Loading dataset...")
x_train, y_train = mndata.load(idx_paths[0][0], idx_paths[0][1])
x_test, y_test = mndata.load(idx_paths[1][0], idx_paths[1][1])
x_train = np.array(x_train)
y_train = np.array(y_train)
x_test = np.array(x_test)
y_test = np.array(y_test)
# Normalize an array with data in an interval of [0, 255] to [0, 1]
x_train = x_train.astype('float32') / 255
x_test = x_test.astype('float32') / 255
# Reshape the image to be used in a CNN
x_train = x_train.reshape(x_train.shape[0], 28, 28, 1)
x_test = x_test.reshape(x_test.shape[0], 28, 28, 1)
# Perform one-hot encoding on label array
y_train = tf.keras.utils.to_categorical(y_train, len(mapping))
y_test = tf.keras.utils.to_categorical(y_test, len(mapping))
print("[!] Dataset loaded!")
return x_train, y_train, x_test, y_test, mapping
import copy
import pandas as pd
import math
import matplotlib.pyplot as mt
import numpy as np
import sklearn as sk
import sklearn.metrics
from sklearn.linear_model import LogisticRegression
from mnist import MNIST
mndata = MNIST('/home/subhani007/Desktop/ML Assignment/extracted')
mndata.gz = False
images_train, labels_train = mndata.load_training()
images_test, labels_test = mndata.load_testing()
print(len(images_train))
print(len(labels_train))
# for i in range(0, 10):
# # print(np.array(images_test[i]).reshape(784, 1))
# # logit.predict(testImages[i],testLabels[i])
# print('-->', i)
# print(logit.predict(np.array(images_test[i]).reshape(1, 784)))
# score = logit.score(np.array(images_test[i]).reshape(1,784), np.array(labels_test[i]).reshape(1,1))
# print('score:', i, ':', score)
# logitL2 = LogisticRegression(multi_class='ovr', solver='lbfgs',penalty='l1')
# logitL2.fit(images_train, labels_train)
# score = logitL2.score(np.array(images_test).reshape(10000, 784), np.array(labels_test).reshape(10000, 1))
def main(_):
# Import data
# mnist = input_data.read_data_sets(FLAGS.data_dir)
mndata = MNIST('data/fashion')
mndata.gz = True
x_train, y_train = mndata.load_training()
x_test, y_test = mndata.load_testing()
num_classes = 10
# a = np.array(y_train)
# b = np.zeros((len(y_train), num_classes))
# b[np.arange(len(y_train)), a] = 1
# y_train = b
# a = np.array(y_test)
# b = np.zeros((len(y_test), num_classes))
# b[np.arange(len(y_test)), a] = 1
# y_test = b
# Create the model
x = tf.placeholder(tf.float32, [None, 784], name='x')
W = tf.Variable(tf.zeros([784, 10]))
b = tf.Variable(tf.zeros([10]))
y = tf.matmul(x, W) + b
# Define loss and optimizer
y_ = tf.placeholder(tf.int64, [None], name='y_')
# The raw formulation of cross-entropy,
#
# tf.reduce_mean(-tf.reduce_sum(y_ * tf.log(tf.nn.softmax(y)),
# reduction_indices=[1]))
#
# can be numerically unstable.
#
# So here we use tf.losses.sparse_softmax_cross_entropy on the raw
# outputs of 'y', and then average across the batch.
cross_entropy = tf.losses.sparse_softmax_cross_entropy(labels=y_, logits=y)
train_step = tf.train.GradientDescentOptimizer(0.5).minimize(cross_entropy)
sess = tf.InteractiveSession()
tf.global_variables_initializer().run()
# Train
for _ in range(1000):
# batch_xs, batch_ys = mnist.train.next_batch(100)
batch_xs, batch_ys = next_batch(100, x_train, y_train)
# print(batch_xs.shape, batch_ys.shape)
sess.run(train_step, feed_dict={x: batch_xs, y_: batch_ys})
# Test trained model
correct_prediction = tf.equal(tf.argmax(y, 1), y_)
accuracy = tf.reduce_mean(tf.cast(correct_prediction, tf.float32))
print(sess.run(
accuracy, feed_dict={
# x: mnist.test.images,
# y_: mnist.test.labels
x: x_test,
y_: y_test
}))
saver = tf.train.Saver()
saver.save(sess, 'model/model.ckpt')
import random
import numpy as np
from mnist import MNIST
from NeuralNetwork import NeuralNetwork
# parameters
learning_rate = 3
num_training_examples_per_epoch = 100
num_epochs = 100000
num_reports = 20
network = NeuralNetwork([784, 80, 20, 10])
# setup
mnist_data = MNIST('mnist_data')
mnist_data.gz = True
training_images, training_labels = mnist_data.load_training()
testing_images, testing_labels = mnist_data.load_testing()
training_images = np.array(
training_images) / 255 # normalization to prevent calculation overflow
testing_images = np.array(testing_images) / 255
# trains a neural network to identify handwritten digits
def main():
print(evaluate_network())
for i in range(num_epochs):
images, labels = get_random_training_examples()
network.train_on_minibatch(images,
[one_hot(label) for label in labels],
learning_rate)
if i % (num_epochs // num_reports) == 0:
def setup(init_pop):
population = []
mndata = MNIST('./mnist_data')
mndata.gz = True
gen = 10000
mutation_rate = 0 # dynamic
elitism = int(init_pop * .1)
sel = int(init_pop * .33)
train_x, train_y = mndata.load_training()
train_x = np.array(train_x) / 255.0
test_x, test_labels = mndata.load_testing()
test_x = np.array(test_x) / 255.0
all_data = list(zip(train_x, train_y))
valid_data = list(zip(test_x, test_labels))
fitness = []
for j in range(0, init_pop):
population.append(create_crom(128))
indices = list(range(len(all_data)))
size_sample = 50
for i in range(0, gen):
fitness.clear()
validation_idx = np.random.choice(indices,
size=size_sample,
replace=False)
sub_set = np.array(all_data)[validation_idx]
for crom in population:
loss, acc = check_validation(crom, sub_set, np.tanh)
fitness.append((loss, crom, acc))
fitness = sorted(fitness, key=lambda tup: tup[0])
best = fitness[0]
if i % 100 == 0:
print(i, " best loss:", best[0], "best acc", best[2])
if i % 1000 == 0:
with open('weights_tanh/weights_save' + str(i) + '.pkl',
'wb') as f:
pickle.dump(best[1], f, pickle.HIGHEST_PROTOCOL)
size_sample = int(1.5 * size_sample) % 6000
mutation_rate = (0.5 * (float(i + 1) / float(gen)))
print(mutation_rate)
chosen = selection(fitness, sel)
children = [elem[1] for elem in fitness[:elitism]]
for elem in chosen:
if len(children) == init_pop:
break
mom, pop = elem
child1 = crossover(mom, pop)
children.append(mutate(child1, mutation_rate))
population = children
best = fitness[0]
print(gen, " best loss:", best[0], "best acc", best[2])
loss, acc, pred = check_test(best[1], valid_data, np.tanh)
print("test loss:", loss, "test acc", acc)
with open('weights_tanh/weights_save' + '.pkl', 'wb') as f:
pickle.dump(best[1], f, pickle.HIGHEST_PROTOCOL)
with open("weights_tanh/weight.txt", 'w') as f:
for key, value in best[1].items():
f.write(key)
for elem in value:
f.write(str(elem) + ',\n')
f = open("weights_tanh/test_tanh.pred", "w")
f.write(pred[:-1])
f.close()
def get_data(dataset='digits'):
mndata = MNIST(abspath('./emnist_data'))
mndata.gz = True
mndata.select_emnist(dataset)
return mndata.load_training()
from sklearn.externals import joblib
from skimage.feature import hog
# fix random seed for reproducibility
seed_value = 123; np.random.seed(seed_value); #set_random_seed(seed_value) # Keras uses its source of randomness regardless Theano or TensorFlow.In addition, TensorFlow has its own random number generator that must also be seeded by calling the set_random_seed() function immediately after the NumPy random number generator:
exec(open(os.path.abspath('image_common_utils.py')).read())
#%% Source reference: http://hanzratech.in/2015/02/24/handwritten-digit-recognition-using-opencv-sklearn-and-python.html
################### Get data to Build the model #####################
# Import the modules
from mnist import MNIST
# Load the dataset
mnist_data = MNIST('./image_data/mnist_yann_lecun'); mnist_data.gz = True
images, labels = mnist_data.load_training()
# Extract the features and labels
ar_features = np.array(images, 'int16')
ar_labels = np.array(labels, 'int')
ar_features.shape, ar_labels.shape # (60000, 784), (60000,)
#View images
# View one image of particular index
index = 1
x_image = np.reshape(ar_features[index], [28, 28])
plt.imshow(x_image); plt.show()
# see the label
ar_labels[index]
def augment(images, labels, start=10, end=20, inc=10):
aug_images = []
aug_labels = []
for image, label in zip(images, labels):
aug_images.append(image)
aug_labels.append(label)
for i in range(start, end, inc):
rotated = rotate(reshape(image, (28, 28)), i, reshape=False)
aug_images.append(reshape(rotated, (784)))
aug_labels.append(label)
return (array(aug_images), array(aug_labels))
mnist = MNIST("./mnist")
mnist.gz = True
images, labels = mnist.load_training()
images_test, labels_test = mnist.load_testing()
images = array(images) / 255.
images_test = array(images_test) / 255.
labels = one_hot(labels)
labels_test = one_hot(labels_test)
colours = ["b", "g", "r", "c", "m"]
l2 = L2Reg(5.0)
net1 = Network([Layer(784, 100, sigmoid, l2), Layer(100, 10, softmax, l2)])
net1.save('./weights/tmp.pkl')
net2 = Network.load('./weights/tmp.pkl')
def get_train_images():
mndata = MNIST('resources')
mndata.gz = True
images, labels = mndata.load_training()
return images, labels
