def instantiate_from(self, filename):
datadir = os.environ.get('FHIR_UNITTEST_DATADIR') or \
os.path.abspath(os.path.join(os.path.dirname(__file__), '..', '..', 'fhir-parser', 'downloads'))
with io.open(os.path.join(datadir, filename), 'r',
encoding='utf-8') as handle:
js = json.load(handle)
self.assertEqual("MolecularSequence", js["resourceType"])
return molecularsequence.MolecularSequence(js)
def testMolecularSequence3(self):
inst = self.instantiate_from("sequence-example-fda-vcfeval.json")
self.assertIsNotNone(
inst, "Must have instantiated a MolecularSequence instance")
self.implMolecularSequence3(inst)
js = inst.as_json()
self.assertEqual("MolecularSequence", js["resourceType"])
inst2 = molecularsequence.MolecularSequence(js)
self.implMolecularSequence3(inst2)
def testMolecularSequence1(self):
inst = self.instantiate_from(
"sequence-genetics-example-breastcancer.json")
self.assertIsNotNone(
inst, "Must have instantiated a MolecularSequence instance")
self.implMolecularSequence1(inst)
js = inst.as_json()
self.assertEqual("MolecularSequence", js["resourceType"])
inst2 = molecularsequence.MolecularSequence(js)
self.implMolecularSequence1(inst2)
