def orcid_auth():
access_token_url = 'https://pub.orcid.org/oauth/token'
payload = dict(client_id="APP-PF0PDMP7P297AU8S",
redirect_uri=request.json['redirectUri'],
client_secret=os.getenv('ORCID_CLIENT_SECRET'),
code=request.json['code'],
grant_type='authorization_code')
# Exchange authorization code for access token
# The access token has the ORCID ID, which is actually all we need here.
r = requests.post(access_token_url, data=payload)
try:
my_orcid_id = r.json()["orcid"]
except KeyError:
print u"Aborting /api/auth/orcid " \
u"with 500 because didn't get back orcid in oauth json. got this instead: {}".format(r.json())
abort_json(500, "Invalid JSON return from ORCID during OAuth.")
my_person = Person.query.filter_by(orcid_id=my_orcid_id).first()
try:
token = my_person.get_token()
except AttributeError: # my_person is None. So make a new user
my_person = make_person(my_orcid_id, high_priority=True)
token = my_person.get_token()
set_person_claimed_at(my_person)
return jsonify(token=token)
def orcid_auth():
access_token_url = 'https://pub.orcid.org/oauth/token'
payload = dict(client_id="APP-PF0PDMP7P297AU8S",
redirect_uri=request.json['redirectUri'],
client_secret=os.getenv('ORCID_CLIENT_SECRET'),
code=request.json['code'],
grant_type='authorization_code')
# Exchange authorization code for access token
# The access token has the ORCID ID, which is actually all we need here.
r = requests.post(access_token_url, data=payload)
my_orcid_id = r.json()["orcid"]
my_person = Person.query.filter_by(orcid_id=my_orcid_id).first()
try:
token = my_person.get_token()
except AttributeError: # my_person is None. So make a new user
# @todo: make_person() is untested. Test.
my_person = make_person(my_orcid_id, high_priority=True)
token = my_person.get_token()
set_person_claimed_at(my_person)
return jsonify(token=token)
def load_campaign(filename, campaign=None, limit=None):
with open("data/" + filename, "r") as f:
lines = f.read().split("\n")
print "found {} ORCID lines".format(len(lines))
print len(lines)
if limit:
lines = lines[:limit]
total_start = time()
row_num = 0
for line in lines:
row_num += 1
# can have # as comments
if line.startswith("#"):
print "skipping comment line"
continue
loop_start = time()
email = None
if "," in line:
(dirty_orcid, email, twitter) = line.split(",")
else:
dirty_orcid = line
try:
orcid_id = clean_orcid(dirty_orcid)
except NoOrcidException:
try:
print u"\n\nWARNING: no valid orcid_id in line {}; skipping\n\n".format(
line)
except UnicodeDecodeError:
print u"\n\nWARNING: no valid orcid_id and line throws UnicodeDecodeError; skipping\n\n"
continue
my_person = Person.query.filter_by(orcid_id=orcid_id).first()
if my_person:
print u"row {}, already have person {}, skipping".format(
row_num, orcid_id)
else:
print u"row {}, making person {}".format(row_num, orcid_id)
my_person = make_person(orcid_id, high_priority=False)
my_person.campaign = campaign
my_person.email = email
my_person.twitter = twitter
db.session.merge(my_person)
commit_success = safe_commit(db)
if not commit_success:
print u"COMMIT fail on {}".format(my_person.orcid_id)
print "row {}: finished {} in {}s\n".format(row_num, orcid_id,
elapsed(loop_start))
print "finished load_campaign on {} profiles in {}s\n".format(
len(lines), elapsed(total_start))
def profile_endpoint(orcid_id):
my_person = Person.query.filter_by(orcid_id=orcid_id).first()
if not my_person:
try:
my_person = make_person(orcid_id, high_priority=True)
except (OrcidDoesNotExist, NoOrcidException):
print u"returning 404: orcid profile {} does not exist".format(orcid_id)
abort_json(404, "That ORCID profile doesn't exist")
return json_resp(my_person.to_dict())
def load_campaign(filename, campaign=None, limit=None):
with open("data/" + filename, "r") as f:
lines = f.read().split("\n")
print "found {} ORCID lines".format(len(lines))
print len(lines)
if limit:
lines = lines[:limit]
total_start = time()
row_num = 0
for line in lines:
row_num += 1
# can have # as comments
if line.startswith("#"):
print "skipping comment line"
continue
loop_start = time()
email = None
if "," in line:
(dirty_orcid, email, twitter) = line.split(",")
else:
dirty_orcid = line
try:
orcid_id = clean_orcid(dirty_orcid)
except NoOrcidException:
try:
print u"\n\nWARNING: no valid orcid_id in line {}; skipping\n\n".format(line)
except UnicodeDecodeError:
print u"\n\nWARNING: no valid orcid_id and line throws UnicodeDecodeError; skipping\n\n"
continue
my_person = Person.query.filter_by(orcid_id=orcid_id).first()
if my_person:
print u"row {}, already have person {}, skipping".format(row_num, orcid_id)
else:
print u"row {}, making person {}".format(row_num, orcid_id)
my_person = make_person(orcid_id, store_in_db=True)
my_person.campaign = campaign
my_person.email = email
my_person.twitter = twitter
db.session.merge(my_person)
commit_success = safe_commit(db)
if not commit_success:
print u"COMMIT fail on {}".format(my_person.orcid_id)
print "row {}: finished {} in {}s\n".format(row_num, orcid_id, elapsed(loop_start))
print "finished load_campaign on {} profiles in {}s\n".format(len(lines), elapsed(total_start))
def twitter_register_but_login_if_they_are_already_registered():
twitter_creds = get_twitter_creds(request.json.get('oauth_token'), request.json.get('oauth_verifier'))
if not twitter_creds:
print u"error in twitter_register_but_login_if_they_are_already_registered, empty twitter creds"
abort_json(422, "empty twitter creds")
try:
my_person = make_person(twitter_creds)
except PersonExistsException:
my_person = Person.query.filter_by(twitter=twitter_creds["screen_name"]).first()
return jsonify({"token": my_person.get_token()})
def create_person(dirty_orcid, campaign=None, store_in_db=False):
try:
orcid_id = clean_orcid(dirty_orcid)
except NoOrcidException:
print u"\n\nWARNING: no valid orcid_id in {}; skipping\n\n".format(dirty_orcid)
raise
if store_in_db:
print u"storing in db"
my_person = make_person(orcid_id, store_in_db=True)
if campaign:
my_person.campaign = campaign
db.session.add(my_person)
success = safe_commit(db)
if not success:
print u"ERROR! committing {}".format(my_person.orcid_id)
else:
print u"NOT storing in db"
my_person = make_person(orcid_id, store_in_db=False)
print my_person
def create_person(dirty_orcid, campaign=None, store_in_db=False):
try:
orcid_id = clean_orcid(dirty_orcid)
except NoOrcidException:
print u"\n\nWARNING: no valid orcid_id in {}; skipping\n\n".format(
dirty_orcid)
raise
if store_in_db:
print u"storing in db"
my_person = make_person(orcid_id, store_in_db=True)
if campaign:
my_person.campaign = campaign
db.session.add(my_person)
success = safe_commit(db)
if not success:
print u"ERROR! committing {}".format(my_person.orcid_id)
else:
print u"NOT storing in db"
my_person = make_person(orcid_id, store_in_db=False)
print my_person
def twitter_register_but_login_if_they_are_already_registered():
twitter_creds = get_twitter_creds(request.json.get('oauth_token'), request.json.get('oauth_verifier'))
landing_page = request.json.get("customLandingPage", "default")
if not twitter_creds:
print u"error in twitter_register_but_login_if_they_are_already_registered, empty twitter creds"
abort_json(422, "empty twitter creds")
try:
my_person = make_person(twitter_creds, landing_page=landing_page)
except PersonExistsException:
my_person = Person.query.filter_by(twitter=twitter_creds["screen_name"]).first()
return jsonify({"token": my_person.get_token()})
