def deserialize(self, session):
patient_src_id = self.raw_data["subject"]["reference"].split("/")[0]
patient_id = Patient.get_id_for_source_id(session, patient_src_id)
return Encounter(
source_id=self.raw_data["id"],
patient_id=patient_id,
start_date=self.raw_data["period"]["start"],
end_date=self.raw_data["period"]["end"],
type_code=self.raw_data["type"][0]["coding"][0]["code"],
type_code_system=self.raw_data["type"][0]["coding"][0]["system"],
)
def deserialize(self, session):
patient_src_id = self.raw_data["subject"]["reference"].split("/")[0]
patient_id = Patient.get_id_for_source_id(session, patient_src_id)
encounter_src_id = self.raw_data["context"]["reference"].split("/")[0]
encounter_id = Encounter.get_id_for_source_id(session,
encounter_src_id)
if "performedDateTime" in self.raw_data:
procedure_date = self.raw_data["performedDateTime"].split("T")[0]
else:
procedure_date = self.raw_data["performedPeriod"]["start"].split(
"T")[0]
return Procedure(
source_id=self.raw_data["id"],
patient_id=patient_id,
encounter_id=encounter_id,
procedure_date=procedure_date,
type_code=self.raw_data["code"]["coding"][0]["code"],
type_code_system=self.raw_data["code"]["coding"][0]["system"],
)
def deserialize(self, session):
patient_src_id = self.raw_data["subject"]["reference"].split("/")[0]
patient_id = Patient.get_id_for_source_id(session, patient_src_id)
encounter_src_id = self.raw_data["context"]["reference"].split("/")[0]
encounter_id = Encounter.get_id_for_source_id(session,
encounter_src_id)
if "component" in self.raw_data:
components = [{
"code": component["code"],
"valueQuantity": component["valueQuantity"]
} for component in self.raw_data["component"]]
else:
components = [{
"code":
self.raw_data["code"],
"valueQuantity":
self.raw_data.get("valueQuantity", None),
}]
return [
Observation(
source_id=self.raw_data["id"] + "-" + str(i),
patient_id=patient_id,
encounter_id=encounter_id,
observation_date=self.raw_data["effectiveDateTime"].split("T")
[0],
type_code=component["code"]["coding"][0]["code"],
type_code_system=component["code"]["coding"][0]["system"],
value=component["valueQuantity"]["value"]
if component["valueQuantity"] else None,
unit_code=component["valueQuantity"]["unit"]
if component["valueQuantity"] else None,
unit_code_system=component["valueQuantity"]["system"]
if component["valueQuantity"] else None,
) for i, component in enumerate(components)
]
