Exemple #1
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def T4_Lysozyme_L99A_in_pdbid_181l(to_form='molsysmt.MolSys'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['T4_Lysozyme_L99A_in_pdbid_181l.msmpk'],
                     to_form=to_form)
    return molsys
Exemple #2
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def pentalanine(to_form='molsysmt.MolSys'):

    from molsysmt.demo import files
    from molsysmt.multitool import convert
    molsys = convert(
        [files['pentalanine.prmtop'], files['pentalanine.inpcrd']],
        to_form=to_form)
    return molsys
Exemple #3
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def Ar_Xe_pbc_vacuum_traj(to_form='molsysmt.TrajectoryDict'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['Ar_Xe_pbc_vacuum.trjpk'], to_form=to_form)
    return molsys
Exemple #4
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def particles_4_frames_3(to_form='XYZ'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['particles_4_frames_3.xyznpy'], to_form=to_form)
    return molsys
Exemple #5
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def pentalanine_traj(to_form='molsysmt.MolSys'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['pentalanine_traj.msmpk'], to_form=to_form)
    return molsys
Exemple #6
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def TcTIM_in_pdbid_1tcd(to_form='molsysmt.MolSys'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['TcTIM_in_pdbid_1tcd.msmpk'], to_form=to_form)
    return molsys
Exemple #7
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def lysine_dipeptide_vacuum(to_form='molsysmt.MolSys'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['lysine_dipeptide_vacuum.msmpk'], to_form=to_form)
    return molsys
Exemple #8
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def metenkephalin(to_form='molsysmt.MolSys'):

    from molsysmt.demo import files
    from molsysmt import convert
    molsys = convert(files['metenkephalin.pdb'], to_form=to_form)
    return molsys