def pedigree(case_id):
"""Fetch the contents of a pedigree file."""
root = current_app.config['MIP_ANALYSIS_ROOT']
case_obj = db.case(case_id)
analysis = analysis_info(root, case_obj)
if analysis['pedigree']:
with open(analysis['pedigree']) as handle:
content = handle.read()
return Response(content, mimetype='text/plain')
else:
return abort(404)
def pedigree(case_id):
"""Create pedigree from LIMS."""
case_obj = db.case(case_id)
cust_id, family_id = case_obj.customer.id, case_obj.name
ped_content = analyze.pedigree(lims_api, cust_id, family_id)
return Response(ped_content, mimetype='text/plain')
def case(case_id):
"""Show details for a case."""
root = current_app.config['MIP_ANALYSIS_ROOT']
case_obj = db.case(case_id)
analysis = analysis_info(root, case_obj)
return render_template('case.html', case=case_obj, analysis=analysis)