def test_get_all_metrics_scaffold(self):
metrics = get_all_metrics(self.test,
self.gen,
test_scaffolds=self.test_sf,
k=3,
n_jobs=2)
print(metrics)
def test_get_all_metrics_multiprocess(self):
metrics = get_all_metrics(self.ref, self.gen, k=3, n_jobs=2)
for metric in self.target:
assert np.allclose(metrics[metric], self.target[metric]), \
("Metric `{}` value does not match expected "
"value. Got {}, expected {}".format(metric,
metrics[metric],
self.target[metric]))
def test_get_all_metrics_multiprocess(self):
metrics = get_all_metrics(gen=self.gen, test=self.test, k=3, n_jobs=2)
fail = set()
for metric in self.target:
if not np.allclose(metrics[metric], self.target[metric]):
warnings.warn("Metric `{}` value does not match expected "
"value. Got {}, expected {}".format(
metric, metrics[metric],
self.target[metric]))
fail.add(metric)
assert len(fail) == 0, f"Some metrics didn't pass tests: {fail}"
def test_get_all_metrics_scaffold(self):
get_all_metrics(gen=self.gen,
test=self.test,
test_scaffolds=self.test_sf,
k=3,
n_jobs=2)