Exemple #1
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def test_make_degenerate_regex_rna_all_degen():
    assert (make_degenerate_regex('ABCDGHKMNRSUVWY', molecule='rna') ==
            'A[CGU]C[AGU]G[ACU][GU][AC][ACGU][AG][GC]U[ACG][AU][CU]')
Exemple #2
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def test_make_degenerate_regex_dna_all_degen():
    assert (make_degenerate_regex('ABCDGHKMNRSTVWY', molecule='dna') ==
            'A[CGT]C[AGT]G[ACT][GT][AC][ACGT][AG][GC]T[ACG][AT][CT]')
Exemple #3
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def test_make_degenerate_regex_dna_repeat_bases():
    assert (make_degenerate_regex(
        'ACGTTTTBBNNNNN', molecule='dna') == 'ACGT{4}[CGT]{2}[ACGT]{5}')
Exemple #4
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def test_make_degenerate_regex_dna_all_degen():
    assert (
        make_degenerate_regex("ABCDGHKMNRSTVWY", molecule="dna")
        == "A[CGT]C[AGT]G[ACT][GT][AC][ACGT][AG][GC]T[ACG][AT][CT]"
    )
Exemple #5
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def test_make_degenerate_regex_dna_repeat_bases():
    assert make_degenerate_regex("ACGTTTTBBNNNNN", molecule="dna") == "ACGT{4}[CGT]{2}[ACGT]{5}"
Exemple #6
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def test_make_degenerate_regex_rna_all_degen():
    assert (
        make_degenerate_regex("ABCDGHKMNRSUVWY", molecule="rna")
        == "A[CGU]C[AGU]G[ACU][GU][AC][ACGU][AG][GC]U[ACG][AU][CU]"
    )