# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend import numpy #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,5000,400)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,100000,100),'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_weight' : numpy.linspace(0.0,0.04,10),'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_weight' : numpy.linspace(0.0,0.2,10)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,10000,400),'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_weight' : [0.0006,0.00062,0.00064,0.00066],'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_weight' : [0.0011]}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,500000,100),'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_firing_rate' : numpy.linspace(0.0,400000,100)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,100000,50),'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_firing_rate' : numpy.linspace(0.0,100000,50),'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_weight' : numpy.linspace(0.0006,0.0008,10)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,10000,30),'l4_cortex_exc.params.cell.params.tau_syn_E' : [2.5,3.0,3.5,4.0], 'l4_cortex_exc.params.cell.params.tau_syn_I': [4.0,5.0,6.0,7.0] }).run_parameter_search() CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,1000,30),'l4_cortex_exc.params.cell.params.cm' : [0.1,0.05], 'l4_cortex_exc.params.cell.params.tau_m': [5.0,10.0,20.0,30.0] }).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch, SlurmSequentialBackend import numpy CombinationParameterSearch( SlurmSequentialBackend(num_threads=4, num_mpi=1), { 'l4_cortex_exc.L4ExcL4ExcConnection.base_weight': numpy.linspace(0.0, 0.3, 10), 'l4_cortex_inh.L4InhL4ExcConnection.base_weight': numpy.linspace(0.0, 0.3, 10) }).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=4,num_mpi=1),{'l4_cortex_exc.L4ExcL4ExcConnection.base_weight' : numpy.linspace(0.0,0.3,40),'l4_cortex_exc.L4ExcL4ExcConnection.weight_functions.f1.params.push_pull_ratio' : numpy.linspace(0.5,1.0,20)}).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend import numpy #CombinationParameterSearch(SlurmSequentialBackend(num_threads=4,num_mpi=1),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : [0.002,0.004],'l4_cortex_inh.L4InhL4ExcConnection.weights' : [0.2,0.51]}).run_parameter_search() CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=8),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : numpy.linspace(0.002,0.006,5),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.001,0.03,5), 'l4_cortex_exc.params.cell.params.tau_m' : [10,11,12]}).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch, SlurmSequentialBackend import numpy import time if True: CombinationParameterSearch( SlurmSequentialBackend( num_threads=16, num_mpi=1, slurm_options=['--hint=nomultithread'], path_to_mozaik_env= '/home/antolikjan/virt_env/mozaik-python3/bin/activate'), { 'trial': [1], 'pynn_seed': [263, 503, 701, 947], }).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend import numpy # VogelsAbbott run CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=2),{'exc1.Exc1Exc1Connection.weights' : numpy.linspace(0.0,0.002,20),'inh1.Inh1Exc1Connection.weights' : numpy.linspace(0.0,0.02,20)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0004,0.0005,30),'l4_cortex_exc.rand_struct_ratio' : numpy.linspace(0.5,1.0,20)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.00035,0.00055,6),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(20,90,4)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.00040,0.00045,6),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(1,40,3),'l4_cortex_inh.aff_inh_gain' : numpy.linspace(1.0,1.5,5)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(10,100,10)}).run_parameter_search() #'l4_cortex_exc.AfferentConnection.base_weight' : numpy.linspace(0.0,0.0004,2) #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.0009,5),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0007,0.002,5)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.0011,5),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0005,0.002,5)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.0009,2),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0015,0.002,2), 'l4_cortex_inh.ExcInhAfferentRatio' : numpy.linspace(1.8,1.2,3),'retina_lgn.params.gain' : (4.0,6.0)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4ExcConnection.base_weight' : numpy.linspace(0.0005,0.00045,2),'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.00065,2),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0006,0.0007,2), 'l4_cortex_inh.ExcInhAfferentRatio' : numpy.linspace(1.2,1.5,2),'retina_lgn.params.gain' : (4.0,6.0,8.0)}).run_parameter_search() CombinationParameterSearch( SlurmSequentialBackend(num_threads=1, num_mpi=16), { 'l4_cortex_exc.L4ExcL4ExcConnection.base_weight': [0.00045], 'l4_cortex_exc.L4ExcL4InhConnection.base_weight': [0.0007], 'l4_cortex_inh.L4InhL4ExcConnection.base_weight': [0.0007, 0.0008, 0.0009], 'l4_cortex_inh.ExcInhAfferentRatio': [1.0], 'retina_lgn.params.gain': [15.0], 'l4_cortex_exc.rand_struct_ratio': (0.5, 0.6, 0.7), 'l4_cortex_exc.L4ExcL4ExcConnection.weight_functions.f1.params.sigma': (0.5, 0.7, 1.0) }).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.00042,0.00044,3),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0048,0.0058,4),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(20,90,2)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_inh.aff_inh_gain' : numpy.linspace(1.0,2.0,5),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(50,90,2),'l4_cortex_exc.rand_struct_ratio' : [0.85,0.9,0.99]}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_inh.aff_inh_gain' : numpy.linspace(1.0,2.0,5),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(50,90,2)}).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend import numpy import time if False: CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=64),{ 'retina_lgn.params.gain' : [0.1], 'l4_cortex_exc.params.density' : [10], }).run_parameter_search() if False: CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=64),{ 'l4_cortex_exc.AfferentConnection.base_weight' : [0.0015], 'l23_cortex_exc.L23ExcL23InhConnection.base_weight' : [0.003], 'l23_cortex_exc.L4ExcL23ExcConnection.base_weight' : [0.003], 'l23_cortex_inh.L4ExcL23InhConnection.base_weight' : [0.0001], 'l23_cortex_inh.L23InhL23ExcConnection.base_weight' : [0.0025], 'l23_cortex_inh.L23InhL23InhConnection.base_weight' : [0.0017], 'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : [0.0004], 'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : [0.002,0.0025,0.003], 'l4_cortex_inh.ExcInhAfferentRatio' : [1.7], 'l4_cortex_exc.params.density' : [300], 'only_afferent' : [False], 'l4_cortex_inh.L4InhL4ExcConnection.short_term_plasticity.U' : [0.1,0.13,0.16], }).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch, SlurmSequentialBackend import numpy import time if True: CombinationParameterSearch( SlurmSequentialBackend( num_threads=8, num_mpi=1, path_to_mozaik_env='/home/jantolik/virt_env/mozaik/bin/activate', slurm_options=['--hint=nomultithread']), { 'sheets.l4_cortex_inh.L4InhL4ExcConnection.base_weight': [0.0023, 0.0028, 0.0029], 'sheets.l4_cortex_exc.L4ExcL4InhConnection.base_weight': [0.0009, 0.0008, 0.0007, 0.0006], 'sheets.l4_cortex_exc.params.cell.params.tau_syn_I': [11, 15], }).run_parameter_search()
# -*- coding: utf-8 -*- import sys from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend import numpy #CombinationParameterSearch(SlurmSequentialBackend(num_threads=4,num_mpi=1),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : [0.002,0.004],'l4_cortex_inh.L4InhL4ExcConnection.weights' : [0.2,0.51]}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : numpy.linspace(0.0,0.006,40),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,40)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=8),{'l4_cortex_exc.L4ExcL4InhConnection.weights' : numpy.linspace(0.0006,0.0011,40),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.006,40)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.params.density' : numpy.linspace(5000,50000,10),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.params.cell.params.tau_m' : numpy.linspace(5,50,10),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.params.cell.params.tau_syn_E' : numpy.linspace(0.1,1.0,20),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search() #CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.L4ExcL4InhConnection.weights' : numpy.linspace(0.003,0.01,20),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search() CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=32),{'l4_cortex_exc.L4ExcL4InhConnection.weights' : numpy.linspace(0.0006,0.0008,10)}).run_parameter_search()