# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend
import numpy
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,5000,400)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,100000,100),'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_weight' : numpy.linspace(0.0,0.04,10),'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_weight' : numpy.linspace(0.0,0.2,10)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,10000,400),'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_weight' : [0.0006,0.00062,0.00064,0.00066],'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_weight' : [0.0011]}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,500000,100),'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_firing_rate' : numpy.linspace(0.0,400000,100)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,100000,50),'l4_cortex_exc.params.artificial_stimulators.background_act.params.inh_firing_rate' : numpy.linspace(0.0,100000,50),'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_weight' : numpy.linspace(0.0006,0.0008,10)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,10000,30),'l4_cortex_exc.params.cell.params.tau_syn_E' : [2.5,3.0,3.5,4.0], 'l4_cortex_exc.params.cell.params.tau_syn_I': [4.0,5.0,6.0,7.0] }).run_parameter_search()
CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=1),{'l4_cortex_exc.params.artificial_stimulators.background_act.params.exc_firing_rate' : numpy.linspace(0.0,1000,30),'l4_cortex_exc.params.cell.params.cm' : [0.1,0.05], 'l4_cortex_exc.params.cell.params.tau_m': [5.0,10.0,20.0,30.0] }).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch, SlurmSequentialBackend
import numpy
CombinationParameterSearch(
SlurmSequentialBackend(num_threads=4, num_mpi=1), {
'l4_cortex_exc.L4ExcL4ExcConnection.base_weight':
numpy.linspace(0.0, 0.3, 10),
'l4_cortex_inh.L4InhL4ExcConnection.base_weight':
numpy.linspace(0.0, 0.3, 10)
}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=4,num_mpi=1),{'l4_cortex_exc.L4ExcL4ExcConnection.base_weight' : numpy.linspace(0.0,0.3,40),'l4_cortex_exc.L4ExcL4ExcConnection.weight_functions.f1.params.push_pull_ratio' : numpy.linspace(0.5,1.0,20)}).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend
import numpy
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=4,num_mpi=1),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : [0.002,0.004],'l4_cortex_inh.L4InhL4ExcConnection.weights' : [0.2,0.51]}).run_parameter_search()
CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=8),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : numpy.linspace(0.002,0.006,5),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.001,0.03,5),
'l4_cortex_exc.params.cell.params.tau_m' : [10,11,12]}).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch, SlurmSequentialBackend
import numpy
import time
if True:
CombinationParameterSearch(
SlurmSequentialBackend(
num_threads=16,
num_mpi=1,
slurm_options=['--hint=nomultithread'],
path_to_mozaik_env=
'/home/antolikjan/virt_env/mozaik-python3/bin/activate'), {
'trial': [1],
'pynn_seed': [263, 503, 701, 947],
}).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend
import numpy
# VogelsAbbott run
CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=2),{'exc1.Exc1Exc1Connection.weights' : numpy.linspace(0.0,0.002,20),'inh1.Inh1Exc1Connection.weights' : numpy.linspace(0.0,0.02,20)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0004,0.0005,30),'l4_cortex_exc.rand_struct_ratio' : numpy.linspace(0.5,1.0,20)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.00035,0.00055,6),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(20,90,4)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.00040,0.00045,6),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(1,40,3),'l4_cortex_inh.aff_inh_gain' : numpy.linspace(1.0,1.5,5)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(10,100,10)}).run_parameter_search()
#'l4_cortex_exc.AfferentConnection.base_weight' : numpy.linspace(0.0,0.0004,2)
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.0009,5),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0007,0.002,5)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.0011,5),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0005,0.002,5)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.0009,2),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0015,0.002,2), 'l4_cortex_inh.ExcInhAfferentRatio' : numpy.linspace(1.8,1.2,3),'retina_lgn.params.gain' : (4.0,6.0)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4ExcConnection.base_weight' : numpy.linspace(0.0005,0.00045,2),'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.0007,0.00065,2),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0006,0.0007,2), 'l4_cortex_inh.ExcInhAfferentRatio' : numpy.linspace(1.2,1.5,2),'retina_lgn.params.gain' : (4.0,6.0,8.0)}).run_parameter_search()
CombinationParameterSearch(
SlurmSequentialBackend(num_threads=1, num_mpi=16), {
'l4_cortex_exc.L4ExcL4ExcConnection.base_weight': [0.00045],
'l4_cortex_exc.L4ExcL4InhConnection.base_weight': [0.0007],
'l4_cortex_inh.L4InhL4ExcConnection.base_weight':
[0.0007, 0.0008, 0.0009],
'l4_cortex_inh.ExcInhAfferentRatio': [1.0],
'retina_lgn.params.gain': [15.0],
'l4_cortex_exc.rand_struct_ratio': (0.5, 0.6, 0.7),
'l4_cortex_exc.L4ExcL4ExcConnection.weight_functions.f1.params.sigma':
(0.5, 0.7, 1.0)
}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : numpy.linspace(0.00042,0.00044,3),'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : numpy.linspace(0.0048,0.0058,4),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(20,90,2)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_inh.aff_inh_gain' : numpy.linspace(1.0,2.0,5),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(50,90,2),'l4_cortex_exc.rand_struct_ratio' : [0.85,0.9,0.99]}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_inh.aff_inh_gain' : numpy.linspace(1.0,2.0,5),'l4_cortex_exc.AfferentConnection.num_samples' : numpy.linspace(50,90,2)}).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend
import numpy
import time
if False:
CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=64),{
'retina_lgn.params.gain' : [0.1],
'l4_cortex_exc.params.density' : [10],
}).run_parameter_search()
if False:
CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=64),{
'l4_cortex_exc.AfferentConnection.base_weight' : [0.0015],
'l23_cortex_exc.L23ExcL23InhConnection.base_weight' : [0.003],
'l23_cortex_exc.L4ExcL23ExcConnection.base_weight' : [0.003],
'l23_cortex_inh.L4ExcL23InhConnection.base_weight' : [0.0001],
'l23_cortex_inh.L23InhL23ExcConnection.base_weight' : [0.0025],
'l23_cortex_inh.L23InhL23InhConnection.base_weight' : [0.0017],
'l4_cortex_exc.L4ExcL4InhConnection.base_weight' : [0.0004],
'l4_cortex_inh.L4InhL4ExcConnection.base_weight' : [0.002,0.0025,0.003],
'l4_cortex_inh.ExcInhAfferentRatio' : [1.7],
'l4_cortex_exc.params.density' : [300],
'only_afferent' : [False],
'l4_cortex_inh.L4InhL4ExcConnection.short_term_plasticity.U' : [0.1,0.13,0.16],
}).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch, SlurmSequentialBackend
import numpy
import time
if True:
CombinationParameterSearch(
SlurmSequentialBackend(
num_threads=8,
num_mpi=1,
path_to_mozaik_env='/home/jantolik/virt_env/mozaik/bin/activate',
slurm_options=['--hint=nomultithread']), {
'sheets.l4_cortex_inh.L4InhL4ExcConnection.base_weight':
[0.0023, 0.0028, 0.0029],
'sheets.l4_cortex_exc.L4ExcL4InhConnection.base_weight':
[0.0009, 0.0008, 0.0007, 0.0006],
'sheets.l4_cortex_exc.params.cell.params.tau_syn_I': [11, 15],
}).run_parameter_search()
# -*- coding: utf-8 -*-
import sys
from mozaik.meta_workflow.parameter_search import CombinationParameterSearch,SlurmSequentialBackend
import numpy
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=4,num_mpi=1),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : [0.002,0.004],'l4_cortex_inh.L4InhL4ExcConnection.weights' : [0.2,0.51]}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=16),{'l4_cortex_exc.L4ExcL4ExcConnection.weights' : numpy.linspace(0.0,0.006,40),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,40)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=8),{'l4_cortex_exc.L4ExcL4InhConnection.weights' : numpy.linspace(0.0006,0.0011,40),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.006,40)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.params.density' : numpy.linspace(5000,50000,10),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.params.cell.params.tau_m' : numpy.linspace(5,50,10),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.params.cell.params.tau_syn_E' : numpy.linspace(0.1,1.0,20),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search()
#CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=4),{'l4_cortex_exc.L4ExcL4InhConnection.weights' : numpy.linspace(0.003,0.01,20),'l4_cortex_inh.L4InhL4ExcConnection.weights' : numpy.linspace(0.0,0.1,20)}).run_parameter_search()
CombinationParameterSearch(SlurmSequentialBackend(num_threads=1,num_mpi=32),{'l4_cortex_exc.L4ExcL4InhConnection.weights' : numpy.linspace(0.0006,0.0008,10)}).run_parameter_search()