def register_thermo_com(path=None):
'''Register an installed MSFileReader or XRawFile DLL. Searches the standard installation
paths, but the `--path` option can be used to specify additional search paths.
'''
if path is None:
path = []
try:
import comtypes
except ImportError:
click.secho("comtypes not installed", fg='yellow')
raise click.ClickException(
"This feature requires the comtypes library. Please install it.")
import logging
from ms_deisotope.data_source._vendor.MSFileReader import _register_dll, log, DLL_IS_LOADED
from ms_deisotope.data_source.thermo_raw import determine_if_available
if DLL_IS_LOADED:
click.secho("DLL Already Registered and Loaded")
return
if log is not None:
log.addHandler(logging.StreamHandler())
log.setLevel('DEBUG')
result = _register_dll(path)
if result:
click.secho("DLL Registration Successful")
if determine_if_available():
click.secho("DLL Load Succesful", fg='cyan')
if path is not None:
config = get_config()
config['vendor_readers']['thermo-com'].extend(path)
save_config(config)
else:
click.secho("DLL Load Unsuccessful", fg='red')
else:
click.secho("DLL Registration Unsuccessful")
if log is not None:
log.handlers = log.handlers[:-1]
ScanAcquisitionInformation, ScanEventInformation, ScanWindow,
component, ComponentGroup, InstrumentInformation,
FileInformation, MultipleActivationInformation, ScanFileMetadataBase)
from .metadata.activation import (supplemental_term_map, dissociation_methods_map)
from .metadata.file_information import (MS_MS1_Spectrum, MS_MSn_Spectrum)
from ms_deisotope.utils import Base
try:
from ms_deisotope.data_source._vendor.MSFileReader import (
ThermoRawfile as _ThermoRawFileAPI, register_dll,
log as _api_logger)
comtypes_logger = logging.getLogger("comtypes")
comtypes_logger.setLevel("INFO")
_api_logger.setLevel("INFO")
def is_thermo_raw_file(path):
try:
_ThermoRawFileAPI(path)
return True
except (WindowsError, IOError, ImportError):
return False
def infer_reader(path):
if is_thermo_raw_file(path):
return ThermoRawLoader
raise ValueError("Not Thermo Raw File")
def determine_if_available():
try:
from ms_deisotope.data_source.common import (
ScanDataSource, ScanIterator, RandomAccessScanSource,
Scan, PrecursorInformation, ScanBunch, ChargeNotProvided,
ActivationInformation)
from ms_deisotope.utils import Base
try:
from ms_deisotope.data_source._vendor.MSFileReader import (
ThermoRawfile as _ThermoRawFileAPI, register_dll,
log as _api_logger)
comtypes_logger = logging.getLogger("comtypes")
comtypes_logger.setLevel("INFO")
_api_logger.setLevel("INFO")
def is_thermo_raw_file(path):
try:
_ThermoRawFileAPI(path)
return True
except (WindowsError, IOError, ImportError):
return False
def infer_reader(path):
if is_thermo_raw_file(path):
return ThermoRawLoader
raise ValueError("Not Thermo Raw File")
def determine_if_available():
try:
