def test_get_value(self): pg = peakgroup.GuiPeakGroup(0.1, 100, 50, 60, None) self.assertAlmostEqual(pg.get_value("m_score"), 0.1) self.assertAlmostEqual(pg.get_value("Intensity"), 100) self.assertAlmostEqual(pg.get_value("leftWidth"), 50) self.assertAlmostEqual(pg.get_value("rightWidth"), 60) self.assertRaises(Exception, pg.get_value, "dummy")
def test_exception(self): peptide = MockPeptide() pg = peakgroup.MinimalPeakGroup("f_1", 0.1, 100, False, -1, peptide) self.assertRaises(Exception, pg.set_fdr_score, 4) self.assertRaises(Exception, pg.set_normalized_retentiontime, 4) self.assertRaises(Exception, pg.set_feature_id, 4) self.assertRaises(Exception, pg.set_intensity, 4)
def test_get_value(self): run = MockRun() run.header_dict = {"dummy": 0, "d_score": 1} pg = peakgroup.GeneralPeakGroup([8, 9.0], run, None) pg.set_value("dummy", 42) self.assertAlmostEqual(pg.get_value("dummy"), 42) pg.set_value("dummy", None) self.assertEqual(pg.get_value("dummy"), "NA") self.assertAlmostEqual(pg.get_dscore(), 9.0)
def test_setClusterId(self): peptide = MockPeptide() pg = peakgroup.MinimalPeakGroup("f_1", 0.1, 100, False, -1, peptide) pg.setClusterID(5) self.assertEqual(pg.get_cluster_id(), 5)
def test_create_pg(self): pg = peakgroup.MinimalPeakGroup("f_1", 0.1, 100, False, -1, None) self.assertTrue(True)
def test_select(self): pg = peakgroup.PeakGroupBase() pg.select_this_peakgroup() self.assertTrue(True)
def test_set_intensity(self): pg = peakgroup.PeakGroupBase() pg.set_intensity(0.1) self.assertAlmostEqual(pg.get_intensity(), 0.1)
def test_set_feature_id(self): pg = peakgroup.PeakGroupBase() pg.set_feature_id("f_1") self.assertEqual(pg.get_feature_id(), "f_1")
def test_set_normalized_retentiontime(self): pg = peakgroup.PeakGroupBase() pg.set_normalized_retentiontime(0.1) self.assertAlmostEqual(pg.get_normalized_retentiontime(), 0.1)
def test_set_fdr_score(self): pg = peakgroup.PeakGroupBase() pg.set_fdr_score(0.1) self.assertAlmostEqual(pg.get_fdr_score(), 0.1)
def test_create_pg(self): pg = peakgroup.PeakGroupBase() self.assertTrue(True)
def test_setClusterId(self): pg = peakgroup.GeneralPeakGroup([], None, None) pg.setClusterID(5) self.assertEqual(pg.get_cluster_id(), 5)
def test_create_pg(self): pg = peakgroup.GeneralPeakGroup([], None, None)
def test_create_pg(self): pg = peakgroup.GuiPeakGroup(0.1, 100, 50, 60, None)
def test_dscore(self): peptide = MockPeptide() pg = peakgroup.MinimalPeakGroup("f_1", 0.1, 100, False, -1, peptide, None, 42) self.assertAlmostEqual(pg.get_dscore(), 42)