def processPicklist(self):
"""
Process uploaded picklist file and updates soaks accordingly
"""
from .utils.experiment_utils import processPicklist as func
if getattr(self, 'picklist'):
return func(self, self.picklist.local_upload.file)
def createSrcPlatesFromLibFile(self, numPlates, file):
"""
Creates source plates from CSV file (https://docs.google.com/spreadsheets/d/1FRBm6wVNSpwg4d3zGCYKLQkEZjf4BP9JL0YkEJzSojw/edit?usp=sharing)
Then update wells with the appropriate compounds specified from csv file
Parameters:
numPlates (int): number of empty plates to make
file (uploaded file): CSV file to update wells with appropriate compounds (see example file above)
"""
from .utils.experiment_utils import createSrcPlatesFromLibFile as func
return func(self, numPlates, file)
def matchSrcWellsToSoaks(self, src_wells=[], soaks=[]):
"""
Match soaks to source wells by looping through one-by-one
Parameters:
src_wells (list): List of an experiment's source wells with compounds
soaks (list): List of an experiment's used soaks
Returns:
None
"""
from .utils.experiment_utils import matchSrcWellsToSoaks as func
return func(self, src_wells, soaks)
def interleaveSrcWellsToSoaks(self, src_wells=[], soaks=[]):
"""
Match soaks to source wells interleaved by plate id
Parameters:
src_wells (list): List of an experiment's source wells with compounds
soaks (list): List of an experiment's used soaks
Returns:
None
"""
from .utils.experiment_utils import interleaveSrcWellsToSoaks as func
return func(self, src_wells, soaks)
def removeDropImages(self):
from .utils.plate_utils import removeDropImages as func
return func(self)
def copyCompoundsFromOtherPlate(self, plate):
"""
Takes other plate (isTemplate must be True) and copy its compounds in the appropriate well locations
"""
from .utils.plate_utils import copyCompoundsFromOtherPlate as func
return func(self, plate)
def updateCompounds(self, compounds, compound_dict={}):
"""
"""
from .utils.plate_utils import updateCompounds as func
return func(self, compounds, compound_dict)
def createPlateWells(self):
"""
"""
from .utils.plate_utils import createPlateWells as func
return func(self)
def getModalFormData(cls):
"""
Class method to return data needed for modal form to edit and make new instance of model
"""
from my_utils.views_helper import build_modal_form_data as func
return func(cls)
def createPlatesSoaksFromInitDataJSON(self):
from .utils.experiment_utils import createPlatesSoaksFromInitDataJSON as func
return func(self)
def makePlates(self, num_plates, plate_type, plates_init_data=None):
from .utils.experiment_utils import makePlates as func
return func(self, num_plates, plate_type, plates_init_data=None)
def makeDestPlates(self, num_plates):
from .utils.experiment_utils import makeDestPlates as func
return func(self, num_plates)
def priorityInterleaveSrcWellsToSoaks(self, src_wells=[], soaks=[]):
from .utils.experiment_utils import priorityInterleaveSrcWellsToSoaks as func
return func(self, src_wells, soaks)
def setSoaksDatasetToDefault(self):
from .utils.experiment_utils import setSoaksDatasetToDefault as func
return func(self)
