def __init__(self, name, version, zclust, sigmaz, alpha=50, chi2red_thresh=10):
self.name = name # e.g. "NEP 200"
self.version = version # e.g. "nep200_v0.0.4"
self.zclust = zclust # cluster redshift
self.sigmaz = sigmaz # 1sigma scatter in (zphot-zspec)/(1+zspec)
self.zspec_lo = 0 # lower redshift bound for specz
self.zspec_hi = 0 # upper redshift bound for specz
self.substructures = []
self.alpha = alpha
self.cat = gunzip_read_gzip('%s/%s/%s.cat.gz' % (github_dir, version, version), readcat=1)
self.zout = gunzip_read_gzip('%s/%s/%s.zout.gz' % (github_dir, version, version), readzout=1)
self.fout = gunzip_read_gzip('%s/%s/%s.fout.gz' % (github_dir, version, version), readcat=1)
self.restframe = gunzip_read_gzip('%s/%s/%s.restframe.gz' % (github_dir, version, version), readcat=1)
self.rfcolors = gunzip_read_gzip('%s/%s/%s.restframe_colors.gz' % (github_dir, version, version), readcat=1)
### SETTING OBJECTS IDENTIFIED AS SECURE STARS FROM SPECTROSCOPY TO use=0
self.crossmatch = gunzip_read_gzip('%s/%s/%s.crossmatch.gz' % (github_dir, version, version), readcat=1, dtype=str)
self.star_inds = pylab.find(self.crossmatch.Q == '-1')
for i_star in self.star_inds:
id_phot_arr = self.crossmatch.id_phot[i_star].split(',')
for id_phot in id_phot_arr:
if id_phot != '-1':
self.cat.use[int(id_phot)-1] *= 0
print ' reading: %s_voronoi.pickle' % name
self.voronoi = pickle.load(open('../data/%s_voronoi.pickle' % name, 'rb'))
self.overdens_max = []
for vi in range(len(self.voronoi.overdens_matrix)):
self.overdens_max.append(self.voronoi.overdens_matrix[vi].max())
self.overdens_max = pylab.array(self.overdens_max)
### UPDATING USE FLAG WITH REDUCE CHI**2 THRESHOLD
chi2red = self.zout.chi_p / (self.zout.nfilt - 1.)
cinds = pylab.find((chi2red > chi2red_thresh) & (self.cat.z_spec < 0))
self.cat.use[cinds] = 0.
### UVJ classification
self.UV_color = -2.5 * pylab.log10(self.restframe.restflux_U / self.restframe.restflux_V)
self.VJ_color = -2.5 * pylab.log10(self.restframe.restflux_V / self.restframe.restflux_J)
self.uvj_class = mypy.uvj_select(self.UV_color, self.VJ_color, self.fout.z)
### UVJ classification based on EAZY in 2-filter mode
self.UV_color_2filter = self.rfcolors.U_V_color
self.VJ_color_2filter = self.rfcolors.V_J_color
self.uvj_class_2filter = mypy.uvj_select(self.UV_color_2filter, self.VJ_color_2filter, self.fout.z)
### NUVrJ classification
self.NUVr_color = -2.5 * pylab.log10(self.restframe.restflux_NUV / self.restframe.restflux_r)
self.rJ_color = -2.5 * pylab.log10(self.restframe.restflux_r / self.restframe.restflux_J)
self.nuvrj_class = mypy.nuvrj_select(self.NUVr_color, self.rJ_color, self.fout.z)
xyrd1 = self.cat.x[0], self.cat.y[0], self.cat.ra[0], self.cat.dec[0]
xyrd2 = self.cat.x[1], self.cat.y[1], self.cat.ra[1], self.cat.dec[1]
d_arcsec = mypy.radec_sep(xyrd1[2], xyrd1[3], xyrd2[2], xyrd2[3])
d_pixel = ((xyrd1[0]-xyrd2[0])**2 + (xyrd1[1] - xyrd2[1])**2)**0.5
self.px_scale = d_arcsec / d_pixel
### getting z band magnitude
try: self.zmagnitude = 25 - 2.5 * pylab.log10(self.cat.fluxauto_z)
except: pass
if name != 'SC1324':
try: self.zmagnitude = 25 - 2.5 * pylab.log10(self.cat.fluxauto_Zplus)
except: pass
### setting spatial flag based on Convex Hull method
#zspecinds = pylab.find(self.cat.z_spec > 0)
#self.spatial_flag = checkPoint(self.cat.ra[zspecinds], self.cat.dec[zspecinds], self.cat.ra, self.cat.dec)
#self.inds_spatial = pylab.find(self.spatial_flag == 1)
### setting spatial flag based on Concave Hull method (creates a "tighter" spatial selection than Cnvex Hull)
zspecinds = pylab.find(self.cat.z_spec > 0)
points = pylab.array(zip(self.cat.x[zspecinds], self.cat.y[zspecinds]))
self.concave_hull, self.edge_points = alpha_shape(points, alpha)
self.inds_spatial = CheckPoints(self.concave_hull.buffer(10), self.cat.x, self.cat.y)
self.area_pix2 = self.concave_hull.buffer(10).area
self.area_arcmin2 = self.area_pix2 * (self.px_scale/60.)**2
print ''
def __init__(self, name, version, zclust, sigmaz, alpha=50, chi2red_thresh=10,
uvj_slope=0.88, uvj_intercept=0.59, radio_AGN_filename=None, readcats=True):
self.name = name # e.g. "NEP 200"
self.version = version # e.g. "nep200_v0.0.4"
self.zclust = zclust # cluster redshift
self.sigmaz = sigmaz # 1sigma scatter in (zphot-zspec)/(1+zspec)
self.zspec_lo = 0 # lower redshift bound for specz
self.zspec_hi = 0 # upper redshift bound for specz
self.alpha = alpha
if readcats:
print ' reading: %s.cat' % version
self.cat = mypy.readcat('%s/%s/%s/%s.cat.gz' % (github_dir, github_photo_cats, version, version))
print ' reading: %s.zout' % version
self.zout = mypy.readzout('%s/%s/%s/%s.zout.gz' % (github_dir, github_photo_cats, version, version))
print ' reading: %s_ZFparams.fout' % version
self.fout = mypy.readcat('%s/%s/%s/%s_ZFparams.fout.gz' % (github_dir, github_photo_cats, version, version))
print ' reading: %s.fir' % version
self.fir = mypy.readcat('%s/%s/%s/%s.fir.gz' % (github_dir, github_photo_cats, version, version))
print ' reading: %s.restframe' % version
self.restframe = mypy.readcat('%s/%s/%s/%s.restframe.gz' % (github_dir, github_photo_cats, version, version))
#print ' reading: %s.restframe_colors' % version
#self.rfcolors = mypy.readcat('%s/%s/%s/%s.restframe_colors.gz' % (github_dir, github_photo_cats, version, version))
### SETTING OBJECTS IDENTIFIED AS SECURE STARS FROM SPECTROSCOPY TO use=0
self.crossmatch = mypy.readcat('%s/%s/%s/%s.crossmatch.gz' % (github_dir, github_photo_cats, version, version), dtype=str)
self.star_inds = self.crossmatch.Q == '-1'
for i_star in self.star_inds:
id_phot_arr = self.crossmatch.id_phot[i_star].split(',')
for id_phot in id_phot_arr:
if id_phot != '-1':
self.cat.use[int(id_phot)-1] *= 0
print ' reading: %s_voronoi.pickle' % name
self.voronoi = pickle.load(open('/Users/atomczak/Dropbox/ORELSE/DATA/VORONOI/%s_voronoi.pickle' % name, 'rb'))
self.overdens_max = []
for vi in range(len(self.voronoi.overdens_matrix)):
self.overdens_max.append(self.voronoi.overdens_matrix[vi].max())
self.overdens_max = numpy.array(self.overdens_max)
### UPDATING USE FLAG WITH REDUCE CHI**2 THRESHOLD
chi2red = self.zout.chi_p / (self.zout.nfilt - 1.)
cinds = (chi2red > chi2red_thresh) & (self.cat.z_spec < 0)
self.cat.use[cinds] = 0.
### UVJ classification
self.UV_color = -2.5 * numpy.log10(self.restframe.restflux_U / self.restframe.restflux_V)
self.VJ_color = -2.5 * numpy.log10(self.restframe.restflux_V / self.restframe.restflux_J)
self.uvj_class = mypy.uvj_select(self.UV_color, self.VJ_color, self.fout.z)
#self.uvj_class = uvj_select(self.UV_color, self.VJ_color, self.fout.z, uvj_slope=uvj_slope, uvj_intercept=uvj_intercept)
### UVJ classification based on EAZY in 2-filter mode
#self.UV_color_2filter = self.rfcolors.U_V_color
#self.VJ_color_2filter = self.rfcolors.V_J_color
#self.uvj_class_2filter = mypy.uvj_select(self.UV_color_2filter, self.VJ_color_2filter, self.fout.z)
### NUVrJ classification
self.NUVr_color = -2.5 * numpy.log10(self.restframe.restflux_NUV / self.restframe.restflux_r)
self.rJ_color = -2.5 * numpy.log10(self.restframe.restflux_r / self.restframe.restflux_J)
self.nuvrj_class = mypy.nuvrj_select(self.NUVr_color, self.rJ_color, self.fout.z)
###########################
### adding Radio AGN flag
###########################
self.radio_AGN_cat = None
self.AGN_flag_radio = numpy.zeros(len(self.cat.id))
if radio_AGN_filename != None:
self.radio_AGN_cat = mypy.readcat('%s/%s/%s' % (github_dir, github_radio_cats, radio_AGN_filename), dtype=str)
ids_radio_AGN = self.radio_AGN_cat.id_phot.astype(int)
self.AGN_flag_radio[ids_radio_AGN - 1] = 1
###########################
### adding Xray AGN flag
###########################
self.xray_AGN_cat = None
self.AGN_flag_xray = numpy.zeros(len(self.cat.id))
xyrd1 = self.cat.x[0], self.cat.y[0], self.cat.ra[0], self.cat.dec[0]
xyrd2 = self.cat.x[1], self.cat.y[1], self.cat.ra[1], self.cat.dec[1]
d_arcsec = mypy.radec_sep(xyrd1[2], xyrd1[3], xyrd2[2], xyrd2[3])
d_pixel = ((xyrd1[0]-xyrd2[0])**2 + (xyrd1[1] - xyrd2[1])**2)**0.5
self.px_scale = d_arcsec / d_pixel
### getting z band magnitude
try: self.zmagnitude = 25 - 2.5 * numpy.log10(self.cat.fluxauto_z)
except: pass
if name != 'SC1324':
try: self.zmagnitude = 25 - 2.5 * numpy.log10(self.cat.fluxauto_Zplus)
except: pass
### setting spatial flag based on Convex Hull method
#zspecinds = self.cat.z_spec > 0
#self.spatial_flag = checkPoint(self.cat.ra[zspecinds], self.cat.dec[zspecinds], self.cat.ra, self.cat.dec)
#self.inds_spatial = self.spatial_flag == 1
### setting spatial flag based on Concave Hull method (creates a "tighter" spatial selection than Cnvex Hull)
zspecinds = self.cat.z_spec > 0
points = numpy.array(zip(self.cat.x[zspecinds], self.cat.y[zspecinds]))
self.concave_hull, self.edge_points = mypy.alpha_shape(points, alpha)
self.inds_spatial = mypy.CheckPoints(self.concave_hull.buffer(10), self.cat.x, self.cat.y)
self.area_pix2 = self.concave_hull.buffer(10).area
self.area_arcmin2 = self.area_pix2 * (self.px_scale/60.)**2
print ''