def __init__(self):
self._active = True
self._size = _Button._MultiStateVariable._create(.3)
self._color = _Button._MultiStateVariable._create()
self._color._idle = Color.White()
self._color._highlighted = Color(whole_num=0x2fdbbfff)
self._color._selected = Color(whole_num=0x00e5bfff)
self._color._selected_highlighted = Color(whole_num=0x00f9d0ff)
self._color._unusable = Color.Grey()
def create_atom():
val = struct.Atom()
val.index = 1000
val.selected = True
val.atom_mode = 1 # BALLSTICK
val.labeled = True
val.atom_rendering = True
val.atom_color = Color.White()
val.surface_rendering = True
val.surface_color = Color.White()
val.surface_opacity = 1
val.symbol = "Carbon"
val.serial = 0
val.name = "default"
val.position = Vector3()
return val
def __init__(self):
super(_Image, self).__init__()
self._file_path = ""
self._color = Color.White()
self._scaling_option = _Image.ScalingOptions.stretch
self._pressed_callback = lambda self, x, y: None
self._held_callback = lambda self, x, y: None
self._released_callback = lambda self, x, y: None
def __init__(self):
self._active = False
self._value = _Button._MultiStateVariable._create("")
self._color = _Button._MultiStateVariable._create(Color.White())
self._sharpness = 0.5
self._size = 1.0
self._ratio = 0.5
self._position = Vector3()
self._rotation = Vector3()
def __init__(self):
super(_Atom, self).__init__()
#Molecular
self._symbol = "C"
self._serial = 1
self._name = "default"
self._is_het = False
self._atom_type = "C"
#No API
self._occupancy = 0.0
self._bfactor = 0.0
self._acceptor = False
self._donor = False
self._formal_charge = 0
#Rendering
#API
self._selected = False
self._atom_mode = _Atom.AtomRenderingMode.BallStick
self._labeled = False
self._label_text = ""
self._atom_rendering = True
self._atom_color = Color.Clear()
self._atom_scale = 0.5
self._surface_rendering = False
self._surface_color = Color.Clear()
self._surface_opacity = 1.0
#No API
self._hydrogened = True
self._watered = True
self._het_atomed = True
self._het_surfaced = True
#conformer
self._positions = [Vector3()]
self._in_conformer = [True]
#internal
self._unique_identifier = _Atom._atom_count
self._bonds = []
self._parent = None
_Atom._atom_count += 1
def create_residue():
val = struct.Residue()
val.index = 1000
val._atoms = [struct.Atom(), create_atom(), struct.Atom(), create_atom()]
val._bonds = [create_bond(), create_bond(), create_bond(), create_bond()]
val.ribboned = True
val.ribbon_size = 1
val.ribbon_mode = struct.Residue.RibbonMode.Coil
val.ribbon_color = Color.White()
val.type = "asdf" #RESIDUEDATA
val.serial = 1
val.name = "asdf1234"
val.secondary_structure = struct.Residue.SecondaryStructure.Sheet
return val
def __init__(self):
self._active = True
self._value = _Button._MultiStateVariable._create("text")
self._auto_size = True
self._min_size = 0.0
self._max_size = .3
self._size = 0.2
self._underlined = False
self._ellipsis = True
self._bold = _Button._MultiStateVariable._create(True)
self._color = _Button._MultiStateVariable._create(Color.White())
self._padding_top = 0
self._padding_bottom = 0
self._padding_left = 0
self._padding_right = 0
self._line_spacing = 0
self._vertical_align = _Button.VertAlignOptions.Middle
self._horizontal_align = _Button.HorizAlignOptions.Middle
def __init__(self):
super(_Residue, self).__init__()
#molecular
self._type = "ARG" #RESIDUEDATA
self._serial = 1
self._name = "res"
self._secondary_structure = _Residue.SecondaryStructure.Unknown
#rendering
self._ribboned = True
self._ribbon_size = 1.0
self._ribbon_mode = _Residue.RibbonMode.SecondaryStructure
self._ribbon_color = Color.Clear()
self._labeled = False
self._label_text = ""
#connections
self._atoms = []
self._bonds = []
self._parent = None
def __init__(self):
self._color = Color()
self._rmsd = 0.0
def rand_color():
return Color(whole_num = rand_int())
def __init__(self):
self._active = False
self._enabled = _Button._MultiStateVariable._create(True)
self._color = _Button._MultiStateVariable._create(Color.Black())
def deserialize(self, version, context):
return Color.from_int(context.read_uint())
import nanome
from nanome.util import Logs
from nanome.util import Color
import os
SELECTED_COLOR = Color.from_int(0x00ecc4ff)
DESELECTED_COLOR = Color.from_int(0xffffffff)
CHECKICON = "GreenCheck.png"
LOCKICON = "Lock.png"
UNLOCKICON = "Unlock.png"
REFRESHICON = "Refresh.png"
QUESTIONMARKICON = "QuestionMark.png"
class RMSDMenu():
def __init__(self, rmsd_plugin):
self._menu = rmsd_plugin.menu
self._plugin = rmsd_plugin
self._selected_mobile = [] # button
self._selected_target = None # button
self._run_button = None
self._current_tab = "receptor" # receptor = 0, target = 1
self._drop_down_dict = {
"rotation": ["None", "Kabsch", "Quaternion"],
"reorder_method": ["None", "Hungarian", "Brute", "Distance"],
"select": ["None", "Global"]
} # select["Local"] in the future
self._current_reorder = "None"
self._current_rotation = "None"
self._current_select = "None"
def __init__(self):
super(_Mesh, self).__init__()
self._mesh_color = Color.Gray()