Python parse_checksums Exemples

Exemple #1

Fichier : test_core.py Projet : metagenomics/ncbi-genome-download

def test_parse_checksums():
    checksums_string = '''\
d3c2634cedd0efe05cbf8a5f5384d921  ./GCF_000009605.1_ASM960v1_feature_table.txt.gz
42c1bb1447aea2512a17aeb3645b55e9  ./GCF_000009605.1_ASM960v1_genomic.fna.gz
8a685d49d826c4f0ad05152e906f3250  ./GCF_000009605.1_ASM960v1_genomic.gbff.gz
e2d9e1cfa085cb462a73d3d2d2c22be5  ./GCF_000009605.1_ASM960v1_genomic.gff.gz
d8ce7c80d457e012f9d368a4673dea65  ./GCF_000009605.1_ASM960v1_protein.faa.gz
620a09de4286f66113317456c0dc8f66  ./GCF_000009605.1_ASM960v1_protein.gpff.gz
'''
    expected = [
        {'checksum': 'd3c2634cedd0efe05cbf8a5f5384d921', 'file': 'GCF_000009605.1_ASM960v1_feature_table.txt.gz'},
        {'checksum': '42c1bb1447aea2512a17aeb3645b55e9', 'file': 'GCF_000009605.1_ASM960v1_genomic.fna.gz'},
        {'checksum': '8a685d49d826c4f0ad05152e906f3250', 'file': 'GCF_000009605.1_ASM960v1_genomic.gbff.gz'},
        {'checksum': 'e2d9e1cfa085cb462a73d3d2d2c22be5', 'file': 'GCF_000009605.1_ASM960v1_genomic.gff.gz'},
        {'checksum': 'd8ce7c80d457e012f9d368a4673dea65', 'file': 'GCF_000009605.1_ASM960v1_protein.faa.gz'},
        {'checksum': '620a09de4286f66113317456c0dc8f66', 'file': 'GCF_000009605.1_ASM960v1_protein.gpff.gz'},
    ]

    ret = core.parse_checksums(checksums_string)
    assert ret == expected

Exemple #2

Fichier : test_core.py Projet : mbourqui/ncbi-genome-download

def test_parse_checksums():
    checksums_string = """\
d3c2634cedd0efe05cbf8a5f5384d921  ./GCF_000009605.1_ASM960v1_feature_table.txt.gz
42c1bb1447aea2512a17aeb3645b55e9  ./GCF_000009605.1_ASM960v1_genomic.fna.gz
8a685d49d826c4f0ad05152e906f3250  ./GCF_000009605.1_ASM960v1_genomic.gbff.gz
e2d9e1cfa085cb462a73d3d2d2c22be5  ./GCF_000009605.1_ASM960v1_genomic.gff.gz
d8ce7c80d457e012f9d368a4673dea65  ./GCF_000009605.1_ASM960v1_protein.faa.gz
This_is_totally_an_invalid_line!
620a09de4286f66113317456c0dc8f66  ./GCF_000009605.1_ASM960v1_protein.gpff.gz
"""
    expected = [
        {'checksum': 'd3c2634cedd0efe05cbf8a5f5384d921', 'file': 'GCF_000009605.1_ASM960v1_feature_table.txt.gz'},
        {'checksum': '42c1bb1447aea2512a17aeb3645b55e9', 'file': 'GCF_000009605.1_ASM960v1_genomic.fna.gz'},
        {'checksum': '8a685d49d826c4f0ad05152e906f3250', 'file': 'GCF_000009605.1_ASM960v1_genomic.gbff.gz'},
        {'checksum': 'e2d9e1cfa085cb462a73d3d2d2c22be5', 'file': 'GCF_000009605.1_ASM960v1_genomic.gff.gz'},
        {'checksum': 'd8ce7c80d457e012f9d368a4673dea65', 'file': 'GCF_000009605.1_ASM960v1_protein.faa.gz'},
        {'checksum': '620a09de4286f66113317456c0dc8f66', 'file': 'GCF_000009605.1_ASM960v1_protein.gpff.gz'},
    ]

    ret = core.parse_checksums(checksums_string)
    assert ret == expected