def action_mapper(self, action):
if self.method in ['ppo', 'a2c', 'acktr', 'neat']:
#--------------------------
# cont./discrete methods
#---------------------------
if self.map_flag:
action = action_map(norm_action=action,
lb=self.lb,
ub=self.ub,
lb_norm=self.lb_norm,
ub_norm=self.ub_norm)
if 'int' in self.var_type:
action = ensure_discrete(action=action, var_type=self.var_type)
if self.grid_flag:
#decode the individual back to the int/float/grid mixed space
action = decode_discrete_to_grid(action, self.orig_bounds,
self.bounds_map)
self.state = action.copy()
elif self.method in ['acer', 'dqn']:
#--------------------------
# discrete methods
#---------------------------
if self.index < self.nx:
decoded_action = self.discrete_map[action]
if decoded_action >= self.lb[
self.index] and decoded_action <= self.ub[self.index]:
self.full_action[self.index] = decoded_action
else:
#print(self.index, decoded_action, 'random guess')
self.full_action[self.index] = random.randint(
self.lb[self.index], self.ub[self.index])
self.index += 1
else:
self.index = 0 #start a new loop over the individual
self.full_action = self.observation_space.sample()
if self.grid_flag:
#decode the individual back to the int/float/grid mixed space
self.decoded_action = decode_discrete_to_grid(
self.full_action, self.orig_bounds,
self.bounds_map) #convert integer to categorical
action = self.decoded_action.copy(
) #returned the decoded action for reward evaluation
else:
action = self.full_action.copy(
) #returned the original action for reward evaluation
self.state = self.full_action.copy(
) #take the unconverted original anyway as next state
return action
def fit_worker(self, x):
#"""
#Evaluates fitness of an individual.
#"""
#mir-grid
if self.grid_flag:
#decode the individual back to the int/float/grid mixed space
x = decode_discrete_to_grid(x, self.orig_bounds, self.bounds_map)
fitness = self.fit(x)
return fitness
def fit_worker(self, x):
#This worker is for parallel calculations
# Clip the bat with position outside the lower/upper bounds and return same position
x=self.ensure_bounds(x,self.bounds)
if self.grid_flag:
#decode the individual back to the int/float/grid mixed space
x=decode_discrete_to_grid(x,self.orig_bounds,self.bounds_map)
# Calculate objective function for each search agent
fitness = self.fit(x)
return fitness
def fit_worker(self, hawk_pos):
#"""
#Evaluates fitness of a hawk.
#Params:
#hawk_pos - hawk position vector
#Return:
#float - hawk fitness
#"""
#mir---
hawk_pos=self.ensure_bounds(hawk_pos, self.bounds)
#mir-grid
if self.grid_flag:
#decode the individual back to the int/float/grid mixed space
hawk_pos=decode_discrete_to_grid(hawk_pos,self.orig_bounds,self.bounds_map)
fitness = self.fit(hawk_pos)
return fitness
def evolute(self, ngen, x0=None, verbose=True):
"""
This function evolutes the BAT algorithm for number of generations.
:param ngen: (int) number of generations to evolute
:param x0: (list of lists) initial position of the bats (must be of same size as ``nbats``)
:param verbose: (bool) print statistics to screen
:return: (dict) dictionary containing major BAT search results
"""
self.history = {'local_fitness':[], 'global_fitness':[], 'A': [], 'r': []}
self.fbest=float("inf")
self.verbose=verbose
self.Positions = np.zeros((self.nbats, self.dim))
self.r=self.r0
if x0:
assert len(x0) == self.nbats, '--error: the length of x0 ({}) MUST equal the number of bats in the group ({})'.format(len(x0), self.nbats)
for i in range(self.nbats):
self.Positions[i,:] = x0[i]
else:
# Initialize the positions of bats
for i in range(self.nbats):
self.Positions[i,:]=self.init_sample(self.bounds)
#Initialize and evaluate the first bat population
fitness0=self.eval_bats(position_array=self.Positions)
x0, f0=self.select(pos=self.Positions,fit=fitness0)
self.xbest=np.copy(x0)
# Main BAT loop
for l in range(0, ngen):
self.a= 1 - l * ((1) / ngen) #mir: a decreases linearly between 1 to 0, for discrete mutation
#------------------------------------------------------
# Stage 1A: Loop over all bats to update the positions
#------------------------------------------------------
for i in range(0, self.nbats):
if self.levy_flight:
#Eq.(11) make a levy flight jump to increase population diversity
self.Positions[i,:]=self.Positions[i,:]+np.multiply(np.random.randn(self.dim), self.Levy(self.dim))
#Eq.(8)-(10)
f1=((self.fmin-self.fmax)*l/ngen+self.fmax)*random.random()
f2=((self.fmax-self.fmin)*l/ngen+self.fmin)*random.random()
betas=random.sample(list(range(0,self.nbats)),4)
self.Positions[i, :]=self.xbest+f1*(self.Positions[betas[0],:]-self.Positions[betas[1],:])
+f2*(self.Positions[betas[2],:]-self.Positions[betas[3],:])
self.Positions[i, :] = self.ensure_bounds(self.Positions[i , :], self.bounds)
self.Positions[i, :] = self.ensure_discrete(self.Positions[i , :])
#-----------------------
#Stage 1B: evaluation
#-----------------------
fitness1=self.eval_bats(position_array=self.Positions)
x1, f1=self.select(pos=self.Positions,fit=fitness1)
if f1 <= self.fbest:
self.fbest=f1
self.xbest=x1.copy()
#---------------------------------
#Stage 2A: Generate new positions
#---------------------------------
for i in range(0, self.nbats):
# Pulse rate
if random.random() > self.r:
self.Positions[i, :] = self.xbest + self.A * np.random.uniform(-1,1,self.dim)
self.Positions[i, :] = self.ensure_bounds(self.Positions[i , :], self.bounds)
self.Positions[i, :] = self.ensure_discrete(self.Positions[i , :])
#-----------------------
#Stage 2B: evaluation
#-----------------------
fitness2=self.eval_bats(position_array=self.Positions)
x2, f2=self.select(pos=self.Positions,fit=fitness2)
if f2 <= self.fbest:
self.fbest=f2
self.xbest=x2.copy()
#---------------------------------
#Stage 3A: Generate new positions
#---------------------------------
for i in range(0, self.nbats):
# loudness effect
if random.random() < self.A:
self.Positions[i, :] = self.xbest + self.r * np.random.uniform(-1,1,self.dim)
self.Positions[i, :] = self.ensure_bounds(self.Positions[i , :], self.bounds)
self.Positions[i, :] = self.ensure_discrete(self.Positions[i , :])
#-----------------------
#Stage 3B: evaluation
#-----------------------
fitness3=self.eval_bats(position_array=self.Positions)
x3, f3=self.select(pos=self.Positions,fit=fitness3)
if f3 <= self.fbest:
self.fbest=f3
self.xbest=x3.copy()
#---------------------------------
#Stage 4: Check and update A/r
#---------------------------------
if min(f1, f2, f3) <= self.fbest:
#update A
self.A = self.alpha*self.A
#update r
self.r = self.r0*(1-math.exp(-self.gamma*l))
#---------------------------------
#Stage 5: post-processing
#---------------------------------
#--mir
if self.mode=='max':
self.fitness_best_correct=-self.fbest
self.local_fitness = -min(f1 , f2 , f3)
else:
self.fitness_best_correct=self.fbest
self.local_fitness = min(f1 , f2 , f3)
self.best_position=self.xbest.copy()
self.history['local_fitness'].append(self.local_fitness)
self.history['global_fitness'].append(self.fitness_best_correct)
self.history['A'].append(self.A)
self.history['r'].append(self.r)
# Print statistics
if self.verbose and i % self.nbats:
print('^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^')
print('BAT step {}/{}, nbats={}, Ncores={}'.format((l+1)*self.nbats, ngen*self.nbats, self.nbats, self.ncores))
print('^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^')
print('Best Bat Fitness:', np.round(self.fitness_best_correct,6))
if self.grid_flag:
self.bat_decoded = decode_discrete_to_grid(self.best_position, self.orig_bounds, self.bounds_map)
print('Best Bat Position:', np.round(self.bat_decoded,6))
else:
print('Best Bat Position:', np.round(self.best_position,6))
print('Loudness A:', self.A)
print('Pulse rate r:', self.r)
print('^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^')
#mir-grid
if self.grid_flag:
self.bat_correct = decode_discrete_to_grid(self.best_position, self.orig_bounds, self.bounds_map)
else:
self.bat_correct = self.best_position
if self.verbose:
print('------------------------ BAT Summary --------------------------')
print('Best fitness (y) found:', self.fitness_best_correct)
print('Best individual (x) found:', self.bat_correct)
print('--------------------------------------------------------------')
return self.bat_correct, self.fitness_best_correct, self.history
def evolute(self, ngen, x0=None, verbose=0):
"""
This function evolutes the ES algorithm for number of generations.
:param ngen: (int) number of generations to evolute
:param x0: (list of lists) the initial position of the swarm particles
:param verbose: (bool) print statistics to screen
:return: (dict) dictionary containing major ES search results
"""
self.y_opt = -np.inf
self.best_scores = []
self.best_indvs = []
if x0:
assert len(
x0
) == self.lambda_, '--error: the length of x0 ({}) (initial population) must equal to the size of lambda ({})'.format(
len(x0), self.lambda_)
population = self.init_pop(x0=x0)
else:
population = self.init_pop()
# Begin the evolution process
for gen in range(1, ngen + 1):
# Vary the population and generate new offspring
offspring = self.GenOffspring(pop=population)
# Evaluate the individuals with an invalid fitness with multiprocessign Pool
# create and run the Pool
if self.ncores > 1:
core_list = []
for key in offspring:
core_list.append(offspring[key][0])
with joblib.Parallel(n_jobs=self.ncores) as parallel:
fitness = parallel(
joblib.delayed(self.fit_worker)(item)
for item in core_list)
[
offspring[ind].append(fitness[ind])
for ind in range(len(offspring))
]
else: #serial calcs
for ind in range(len(offspring)):
fitness = self.fit_worker(offspring[ind][0])
offspring[ind].append(fitness)
# Select the next generation population
#print(offspring)
population = copy.deepcopy(self.select(pop=offspring, k=self.mu))
#print(population)
inds, rwd = [population[i][0] for i in population
], [population[i][2] for i in population]
self.best_scores.append(np.max(rwd))
arg_max = np.argmax(rwd)
self.best_indvs.append(inds[arg_max])
if rwd[arg_max] > self.y_opt:
self.y_opt = rwd[arg_max]
self.x_opt = copy.deepcopy(inds[arg_max])
#--mir
if self.mode == 'min':
self.y_opt_correct = -self.y_opt
else:
self.y_opt_correct = self.y_opt
#mir-grid
if self.grid_flag:
self.x_opt_correct = decode_discrete_to_grid(
self.x_opt, self.orig_bounds, self.bounds_map)
else:
self.x_opt_correct = self.x_opt
if verbose:
mean_strategy = [np.mean(population[i][1]) for i in population]
print(
'##############################################################################'
)
print(
'ES step {}/{}, CX={}, MUT={}, MU={}, LAMBDA={}, Ncores={}'
.format(gen * self.lambda_, ngen * self.lambda_,
np.round(self.cxpb, 2), np.round(self.mutpb, 2),
self.mu, self.lambda_, self.ncores))
print(
'##############################################################################'
)
print('Statistics for generation {}'.format(gen))
print(
'Best Fitness:',
np.round(np.max(rwd), 6)
if self.mode == 'max' else -np.round(np.max(rwd), 6))
print(
'Best Individual:',
inds[0] if not self.grid_flag else decode_discrete_to_grid(
inds[0], self.orig_bounds, self.bounds_map))
print('Max Strategy:', np.round(np.max(mean_strategy), 3))
print('Min Strategy:', np.round(np.min(mean_strategy), 3))
print('Average Strategy:', np.round(np.mean(mean_strategy), 3))
print(
'##############################################################################'
)
if verbose:
print(
'------------------------ ES Summary --------------------------'
)
print('Best fitness (y) found:', self.y_opt_correct)
print('Best individual (x) found:', self.x_opt_correct)
print(
'--------------------------------------------------------------'
)
#--mir
if self.mode == 'min':
self.best_scores = [-item for item in self.best_scores]
return self.x_opt_correct, self.y_opt_correct, self.best_scores
def printout(self, mode, gen):
#"""
#Print statistics to screen
#inputs:
# mode (int): 1 to print for individual algorathims and 2 to print for PESA
# gen (int): current generation number
#"""
if mode == 1:
print('***********************************************************************************************')
print('############################################################')
print('ES step {}/{}, CX={}, MUT={}, MU={}, LAMBDA={}'.format(self.STEP0-1,self.STEPS, np.round(self.CXPB,2), np.round(self.MUTPB,2), self.MU, self.LAMBDA))
print('############################################################')
print('Statistics for generation {}'.format(gen))
print('Best Fitness:', np.round(np.max(self.rwd),4) if self.mode == 'max' else -np.round(np.max(self.rwd),4))
print('Max Strategy:', np.round(np.max(self.mean_strategy),3))
print('Min Strategy:', np.round(np.min(self.mean_strategy),3))
print('Average Strategy:', np.round(np.mean(self.mean_strategy),3))
print('############################################################')
print('************************************************************')
print('SA step {}/{}, T={}'.format(self.STEP0-1,self.STEPS,np.round(self.T)))
print('************************************************************')
print('Statistics for the {} parallel chains'.format(self.NCORES))
print('Fitness:', np.round(self.E_next,4) if self.mode == 'max' else -np.round(self.E_next,4))
print('Acceptance Rate (%):', self.acc)
print('Rejection Rate (%):', self.rej)
print('Improvment Rate (%):', self.imp)
print('************************************************************')
if self.pso_flag:
print('^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^')
print('PSO step {}/{}, C1={}, C2={}, Particles={}'.format(self.STEP0-1,self.STEPS, np.round(self.C1,2), np.round(self.C2,2), self.NPAR))
print('^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^')
print('Statistics for generation {}'.format(gen))
print('Best Swarm Fitness:', np.round(self.swm_fit,4) if self.mode == 'max' else -np.round(self.swm_fit,4))
print('Best Swarm Position:', self.swm_pos if not self.grid_flag else decode_discrete_to_grid(self.swm_pos,self.orig_bounds,self.bounds_map))
print('Max Speed:', np.round(np.max(self.mean_speed),3))
print('Min Speed:', np.round(np.min(self.mean_speed),3))
print('Average Speed:', np.round(np.mean(self.mean_speed),3))
print('^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^')
if mode == 2:
print('------------------------------------------------------------')
print('PESA step {}/{}, Ncores={}'.format(self.STEP0-1,self.STEPS, self.ncores))
print('------------------------------------------------------------')
print('PESA statistics for generation {}'.format(gen))
print('Best Fitness:', self.pesa_best[1] if self.mode == 'max' else -self.pesa_best[1])
print('Best Individual:', self.xbest_correct)
print('ALPHA:', np.round(self.ALPHA,3))
print('Memory Size:', self.memory_size)
print('------------------------------------------------------------')
print('***********************************************************************************************')
def evolute(self, ngen, x0=None, warmup=100, verbose=True):
"""
This function evolutes the PESA algorithm for number of generations.
:param ngen: (int) number of generations to evolute
:param x0: (list of lists) initial samples to start the replay memory (``len(x0)`` must be equal or more than ``npop``)
:param warmup: (int) number of random warmup samples to initialize the replay memory and must be equal or more than ``npop`` (only used if ``x0=None``)
:param verbose: (int) print statistics to screen, 0: no print, 1: PESA print, 2: detailed print
:return: (dict) dictionary containing major PESA search results
"""
self.verbose=verbose
self.NGEN=ngen
self.STEPS=self.NGEN*self.NPOP #all
if self.memory_size:
self.MEMORY_SIZE=self.memory_size
else:
self.MEMORY_SIZE=self.STEPS*3+1 #PESA
#-------------------------------------------------------
# Check if initial pop is provided as initial guess
#-------------------------------------------------------
if x0:
# use provided initial guess
warm=ESMod(bounds=self.bounds, fit=self.fit_worker, mu=self.MU, lambda_=self.LAMBDA, ncores=self.ncores)
x0size=len(x0)
assert x0size >= self.NPOP, 'the number of lists in x0 ({}) must be more than or equal npop ({})'.format(x0size, self.NPOP)
self.pop0=warm.init_pop(warmup=x0size, x_known=x0) #initial population for ES
else:
#create initial guess
assert warmup > self.NPOP, 'the number of warmup samples ({}) must be more than npop ({})'.format(warmup, self.NPOP)
warm=ESMod(bounds=self.bounds, fit=self.fit_worker, mu=self.MU, lambda_=self.LAMBDA, ncores=self.ncores)
self.pop0=warm.init_pop(warmup=warmup) #initial population for ES
self.partime={}
self.partime['pesa']=[]
self.partime['es']=[]
self.partime['pso']=[]
self.partime['sa']=[]
self.fit_hist=[]
#------------------------------
# Step 1: Initialize the memory
#------------------------------
self.mymemory=ExperienceReplay(size=self.MEMORY_SIZE) #memory object
xvec0, obj0=[self.pop0[item][0] for item in self.pop0], [self.pop0[item][2] for item in self.pop0] #parse the initial samples
self.mymemory.add(xvec=xvec0, obj=obj0, method=['na']*len(xvec0)) # add initial samples to the replay memory
#--------------------------------
# Step 2: Initialize all methods
#--------------------------------
# Obtain initial population for all methods
espop0, swarm0, swm_pos0, swm_fit0, local_pos, local_fit, x0, E0=self.init_guess(pop0=self.pop0)
# Initialize ES class
es=ESMod(bounds=self.bounds, fit=self.fit_worker, mu=self.MU, lambda_=self.LAMBDA, ncores=self.NCORES, indpb=self.INDPB,
cxpb=self.CXPB, mutpb=self.MUTPB, smin=self.SMIN, smax=self.SMAX)
# Initialize SA class
sa=SAMod(bounds=self.bounds, memory=self.mymemory, fit=self.fit_worker, steps=self.STEPS, ncores=self.NCORES,
chi=self.CHI, replay_rate=self.REPLAY_RATE, cooling=self.COOLING, Tmax=self.TMAX, Tmin=self.TMIN)
# Initialize PSO class (if USED)
if self.pso_flag:
pso=PSOMod(bounds=self.bounds, fit=self.fit_worker, npar=self.NPAR, swm0=[swm_pos0,swm_fit0],
ncores=self.NCORES, c1=self.C1, c2=self.C2, speed_mech=self.SPEED_MECH)
#--------------------------------
# Step 3: Initialize PESA engine
#--------------------------------
#Use initial samples as first guess for SA, ES, and PSO
self.pop_next=deepcopy(espop0) # x0 for ES
self.x_next, self.E_next=deepcopy(x0), deepcopy(E0) # x0 for SA
if self.pso_flag:
self.swm_next, self.local_pos_next, self.local_fit_next=deepcopy(swarm0), deepcopy(local_pos), deepcopy(local_fit) # x0 for PSO (if used)
self.STEP0=1 #step counter
self.ALPHA=self.ALPHA0 #set alpha to alpha0
#--------------------------------
# Step 4: PESA evolution
#--------------------------------
for gen in range(1,self.NGEN+1):
caseids=['es_gen{}_ind{}'.format(gen,ind+1) for ind in range(self.LAMBDA)] # save caseids for ES
if self.pso_flag:
pso_caseids=['pso_gen{}_par{}'.format(gen+1,ind+1) for ind in range(self.NPAR)] # save caseids for PSO
#-------------------------------------------------------------------------------------------------------------------
# Step 5: evolute all methods for 1 generation
#-------------------------------------------------------------------------------------------------------------------
#**********************************
#--Step 5A: Complete PARALEL calcs
# via multiprocess.Process
#*********************************
if self.PROC:
t0=time.time()
QSA = Queue(); QES=Queue(); QPSO=Queue()
def sa_worker():
x_new, E_new, self.T, self.acc, self.rej, self.imp, x_best, E_best, sa_partime= sa.anneal(ngen=1,npop=self.NPOP, x0=self.x_next,
E0=self.E_next, step0=self.STEP0)
QSA.put((x_new, E_new, self.T, self.acc, self.rej, self.imp, x_best, E_best, sa_partime))
def es_worker():
random.seed(self.SEED)
pop_new, es_partime=es.evolute(population=self.pop_next,ngen=1,caseids=caseids)
QES.put((pop_new, es_partime))
def pso_worker():
random.seed(self.SEED)
if gen > 1:
swm_new, swm_pos_new, swm_fit_new, pso_partime=pso.evolute(ngen=1, swarm=self.swm_next, local_pos=self.local_pos_next, local_fit=self.local_fit_next,
swm_best=[self.swm_pos, self.swm_fit], mu=self.MU, exstep=self.STEP0, exsteps=self.STEPS,
caseids=pso_caseids, verbose=0)
else:
swm_new, swm_pos_new, swm_fit_new, pso_partime=pso.evolute(ngen=1, swarm=self.swm_next, local_pos=self.local_pos_next,
local_fit=self.local_fit_next, mu=self.MU, exstep=self.STEP0, exsteps=self.STEPS,
caseids=pso_caseids, verbose=0)
QPSO.put((swm_new, swm_pos_new, swm_fit_new, pso_partime))
Process(target=sa_worker).start()
Process(target=es_worker).start()
if self.pso_flag:
Process(target=pso_worker).start()
self.swm_next, self.swm_pos, self.swm_fit, pso_partime=QPSO.get()
self.local_pos_next=[self.swm_next[key][3] for key in self.swm_next]
self.local_fit_next=[self.swm_next[key][4] for key in self.swm_next]
self.x_next, self.E_next, self.T, self.acc, self.rej, self.imp, self.x_best, self.E_best, sa_partime=QSA.get()
self.pop_next, es_partime=QES.get()
#self.partime.append(time.time()-t0)
self.partime['pesa'].append(time.time()-t0)
self.partime['pso'].append(pso_partime)
self.partime['es'].append(es_partime)
self.partime['sa'].append(sa_partime)
#*********************************
#--Step 5B: Complete Serial calcs
#*********************************
else:
self.pop_next, _ =es.evolute(population=self.pop_next,ngen=1,caseids=caseids) #ES serial
self.x_next, self.E_next, self.T, self.acc, self.rej, self.imp, self.x_best, self.E_best, _ = sa.anneal(ngen=1,npop=self.NPOP, x0=self.x_next,
E0=self.E_next, step0=self.STEP0) #SA serial
if self.pso_flag:
self.swm_next, self.swm_pos, self.swm_fit, _ =pso.evolute(ngen=1, swarm=self.swm_next, local_pos=self.local_pos_next,
local_fit=self.local_fit_next, exstep=self.STEP0, exsteps=self.STEPS,
caseids=pso_caseids, mu=self.MU, verbose=0)
self.local_pos_next=[self.swm_next[key][3] for key in self.swm_next]
self.local_fit_next=[self.swm_next[key][4] for key in self.swm_next]
#*********************************************************
# Step 5C: Obtain relevant statistics for this generation
#*********************************************************
self.STEP0=self.STEP0+self.NPOP #update step counter
self.inds, self.rwd=[self.pop_next[i][0] for i in self.pop_next], [self.pop_next[i][2] for i in self.pop_next] #ES statistics
self.mean_strategy=[np.mean(self.pop_next[i][1]) for i in self.pop_next] #ES statistics
if self.pso_flag:
self.pars, self.fits=[self.swm_next[i][0] for i in self.swm_next], [self.swm_next[i][2] for i in self.swm_next] #PSO statistics
self.mean_speed=[np.mean(self.swm_next[i][1]) for i in self.swm_next]
if self.verbose==2:
self.printout(mode=1, gen=gen)
#-------------------------------------------------------------------------------------------------------------------
#-------------------------------------------------------------------------------------------------------------------
#-----------------------------
# Step 6: Update the memory
#-----------------------------
self.memory_update()
#-----------------------------------------------------------------
# Step 7: Sample from the memory and prepare for next Generation
#-----------------------------------------------------------------
self.resample()
#--------------------------------------------------------
# Step 8: Anneal Alpha if priortized replay is used
#--------------------------------------------------------
if self.MODE=='prior': #anneal alpha between alpha0 (lower) and alpha1 (upper)
self.ALPHA=self.linear_anneal(step=self.STEP0, total_steps=self.STEPS, a0=self.ALPHA0, a1=self.ALPHA1)
#--------------------------------------------------------
# Step 9: Calculate the memory best and print PESA summary
#--------------------------------------------------------
self.pesa_best=self.mymemory.sample(batch_size=1,mode='greedy')[0] #`greedy` will sample the best in memory
self.fit_hist.append(self.pesa_best[1])
self.memory_size=len(self.mymemory.storage) #memory size so far
#--mir
if self.mode=='min':
self.fitness_best=-self.pesa_best[1]
else:
self.fitness_best=self.pesa_best[1]
#mir-grid
if self.grid_flag:
self.xbest_correct=decode_discrete_to_grid(self.pesa_best[0],self.orig_bounds,self.bounds_map)
else:
self.xbest_correct=self.pesa_best[0]
if self.verbose: #print summary data to screen
self.printout(mode=2, gen=gen)
if self.verbose:
print('------------------------ PESA Summary --------------------------')
print('Best fitness (y) found:', self.fitness_best)
print('Best individual (x) found:', self.xbest_correct)
print('--------------------------------------------------------------')
#--mir
if self.mode=='min':
self.fit_hist=[-item for item in self.fit_hist]
return self.xbest_correct, self.fitness_best, self.fit_hist
def evolute(self, ngen, x0=None, verbose=True):
"""
This function evolutes the HHO algorithm for number of generations.
:param ngen: (int) number of generations to evolute
:param x0: (list of lists) initial position of the hawks (must be of same size as ``nhawks``)
:param verbose: (bool) print statistics to screen
:return: (tuple) (best position, best fitness, and dictionary containing major search results)
"""
if self.seed:
random.seed(self.seed)
np.random.seed(self.seed)
self.history = {'local_fitness':[], 'global_fitness':[]}
self.rabbit_energy = float("inf")
self.rabbit_location = np.zeros(self.dim)
self.verbose = verbose
##################################
# Set initial locations of hawks #
##################################
self.hawk_positions = np.zeros((self.nhawks, self.dim))
if x0:
assert len(x0) == self.nhawks, 'Length of x0 array MUST equal the number of hawks (self.nhawks).'
self.hawk_positions = x0
else:
# self.hawk_positions = np.asarray([x * (self.ub - self.lb) + self.lb for x in np.random.uniform(0, 1, (self.nhawks, self.dim))])
for hawk_i in range(self.nhawks):
self.hawk_positions[hawk_i, :] = self.init_sample()
for t in range(ngen):
self.a= 1 - t * ((1) / ngen) #mir: a decreases linearly between 1 to 0, for discrete mutation
###########################
# Evaluate hawk fitnesses #
###########################
fitness_lst = self.eval_hawks()
#######################################################################
# Update rabbit energy and rabbit location based on best hawk fitness #
#######################################################################
for i, fitness in enumerate(fitness_lst):
fitness = fitness if self.mode == 'min' else -fitness
if fitness < self.rabbit_energy:
self.rabbit_energy = fitness
self.rabbit_location = self.hawk_positions[i, :].copy()
#####################################################
# Update best global and local fitnesses in history #
#####################################################
if self.mode=='max':
self.best_global_fitness = -self.rabbit_energy
self.best_local_fitness = -np.min(fitness_lst)
else:
self.best_global_fitness = self.rabbit_energy
self.best_local_fitness = np.min(fitness)
self.history['local_fitness'].append(self.best_local_fitness)
self.history['global_fitness'].append(self.best_global_fitness)
if self.verbose and t % self.nhawks: # change depending on how often message should be displayed
print(f'HHO step {t*self.nhawks}/{ngen*self.nhawks}, nhawks={self.nhawks}, ncores={self.ncores}')
print('Best global fitness:', np.round(self.best_global_fitness, 6))
#mir-grid
if self.grid_flag:
self.rabbit_decoded=decode_discrete_to_grid(self.rabbit_location,self.orig_bounds,self.bounds_map)
print('Best rabbit position:', self.rabbit_decoded)
else:
print('Best rabbit position:', np.round(self.rabbit_location, 6))
print()
################################
# Update the location of hawks #
################################
self.update_hawks(t, ngen, fitness_lst) # now self.hawk_positions is updated
for hawk_i in range(self.nhawks):
#mir: this bound check line is needed to ensure that choices.remove option to work
self.hawk_positions[hawk_i, :] = self.ensure_bounds(self.hawk_positions[hawk_i, :], self.bounds)
for dim in range(self.dim):
if self.var_type[dim] == 'int':
self.hawk_positions[hawk_i, dim] = mutate_discrete(x_ij=self.hawk_positions[hawk_i, dim],
x_min=self.hawk_positions[hawk_i, :].min(),
x_max=self.hawk_positions[hawk_i, :].max(),
lb=self.lb[dim],
ub=self.ub[dim],
alpha=self.a,
method=self.int_transform)
#mir-grid
if self.grid_flag:
self.rabbit_correct=decode_discrete_to_grid(self.rabbit_location,self.orig_bounds,self.bounds_map)
else:
self.rabbit_correct=self.rabbit_location
if self.verbose:
print('------------------------ HHO Summary --------------------------')
print('Function:', self.fit.__name__)
print('Best fitness (y) found:', self.best_global_fitness)
print('Best individual (x) found:', self.rabbit_correct)
print('-------------------------------------------------------------- \n \n')
return self.rabbit_correct, self.best_global_fitness, self.history