def make_chf_panel(self):
""" chf --> common hseg files """
chf_panel = JPanel()
chf_panel.setLayout(MigLayout('insets 0'))
chf_files_label = JLabel('Hemisegment cells')
chf_files_text = JTextArea(
BobGui.archetype_to_str(
self.exper.hseg_cell_files_cab().archetype))
chf_panel.add(chf_files_label, 'growx, wrap')
chf_panel.add(chf_files_text, 'grow, wrap')
chf_files_label = JLabel('Hemisegment binary image files')
chf_files_text = JTextArea(
BobGui.archetype_to_str(self.exper.hseg_bin_files_cab().archetype))
chf_panel.add(chf_files_label, 'growx, wrap')
chf_panel.add(chf_files_text, 'grow, wrap')
chf_files_label = JLabel('Intensity Image Files')
# chf_files_text = JTextArea(BobGui.archetype_to_str(self.exper.hseg_intens_im_files_cab().archetype))
# print(self.exper.hseg_intens_im_files_cab().archetype)
# chf_panel.add(chf_files_label, 'growx, wrap')
# chf_panel.add(chf_files_text, 'grow, wrap')
self.intens_im_boxes = []
intens_im_panel = JPanel()
intens_im_panel.setLayout(MigLayout('insets 0'))
for poss_im_file in self.exper.hseg_intens_im_files_cab().archetype:
self.intens_im_boxes.append(JCheckBox(poss_im_file))
intens_im_panel.add(self.intens_im_boxes[-1], 'wrap')
chf_panel.add(chf_files_label, 'growx, wrap')
chf_panel.add(intens_im_panel, 'grow, wrap')
mdf_create_button = JButton(
'Create meta_data file from default outline')
# mdf_create_button = JButton('<html>Create meta_data file<br>from default outline</html>')
mdf_create_button.addActionListener(
ActionListenerFactory(self, self.mdf_create_al))
mdf_open_button = JButton('Open existing meta_data file')
mdf_open_button.addActionListener(
ActionListenerFactory(self, self.mdf_open_al))
# meta_data_file_buttton = JButton('Open/Create meta_data file')
# meta_data_file_buttton.addActionListener(ActionListenerFactory(self, self.meta_data_al))
# chf_panel.add(meta_data_file_buttton)
chf_panel.add(mdf_create_button, 'wrap')
chf_panel.add(mdf_open_button, 'wrap')
chf_scroll_pane = JScrollPane()
chf_scroll_pane.getViewport().setView(chf_panel)
return chf_scroll_pane
def __init__(self, migLayoutSettings=""):
self.setLayout(MigLayout(migLayoutSettings))
self.initialClick = Point(0, 0)
self.setOpaque(False)
self.setBackground(Color(0, 30, 0, 40))
#self.setBorder(BorderFactory.createLineBorder(Color.RED))
self.initUI()
self.addUI()
class MouseAdap(MouseAdapter):
def mousePressed(ms, m):
self.initialClick = m.getPoint()
class MouseMotionAdap(MouseMotionAdapter):
def mouseDragged(ms, m):
window = SwingUtilities.getWindowAncestor(self)
x = window.getLocation().x
y = window.getLocation().y
xm = (x + m.getX()) - (x + self.initialClick.x)
ym = (y + m.getY()) - (y + self.initialClick.y)
window.setLocation(x + xm, y + ym)
self.addMouseListener(MouseAdap())
self.addMouseMotionListener(MouseMotionAdap())
self.setVisible(True)
def __init__(self):
from java.util.prefs import Preferences
prefs = Preferences.userRoot().node("gov.ca.dsm2.calibration.compare")
self.type = JTextField(prefs.get("type", "EC"), 15)
self.stime = JTextField(prefs.get("stime", "02JUL2001 0000"), 15)
self.etime = JTextField(prefs.get("etime", "31DEC2001 0000"), 15)
self.fileobs = JTextField(
prefs.get(
"file.obs",
"Z:/condor_jobs_cmaes/output_obs/Observed_data_all_forViz.dss"
), 25)
self.filerun1 = JTextField(
prefs.get(
"file.run1",
"Z:/condor_jobs_cmaes/output_obs/previous_run_results/hist_mini_calib_v811_317.dss"
), 25)
self.filerun2 = JTextField(
prefs.get(
"file.run2",
"Z:/condor_jobs_cmaes/output_test/hist_mini_calib_v811_0.dss"),
25)
self.image_dir = JTextField(prefs.get("image.dir", "d:/temp"), 25)
self.locations = JTextField(
prefs.get(
"locations",
"RSAC077,RSAN007,RSAC081,RSAC092,RSAN018,RSAN032,ROLD024,CLIFTON_COURT"
), 35)
self.runButton = JButton("Run", actionPerformed=self.dorun)
from net.miginfocom.swing import MigLayout
self.setLayout(MigLayout())
self.add(JLabel("Output Type"))
self.add(self.type, "wrap")
self.add(JLabel("Start Time"))
self.add(self.stime, "gap unrelated")
self.add(JLabel("End Time"))
self.add(self.etime, "wrap")
self.add(JLabel("Observed File:"))
self.add(self.fileobs, "spanx, growx")
self.add(JLabel("Run1 File:"))
self.add(self.filerun1, "spanx, growx")
self.add(JLabel("Run2 File:"))
self.add(self.filerun2, "spanx, growx")
self.add(JLabel("Image Directory"))
self.add(self.image_dir, "spanx, growx")
self.add(JLabel("Locations"))
self.add(self.locations, "spanx, growx")
self.add(self.runButton)
def make_chf_panel_old(self, at_str):
""" cf --> common hseg files """
chf_panel = JPanel()
# chf_panel.setLayout(BoxLayout(chf_panel, BoxLayout.Y_AXIS))
chf_panel.setLayout(MigLayout('insets 0'))
# chf_panel.setAlignmentX(Component.LEFT_ALIGNMENT)
chf_label = JLabel('Common Hemeisegment Files')
# chf_label.setAlignmentX(Component.LEFT_ALIGNMENT)
chf_panel.add(chf_label, 'grow, wrap')
chf_text_area = JTextArea(at_str)
chf_panel.add(chf_text_area, 'grow, push, span')
return chf_panel
def __init__(self):
super(BobGui, self).__init__('BobPy')
# cls = self.getClass()
# print(cls)
# self.setLayout(MigLayout())
self.setLayout(BorderLayout())
self.main_panel = JPanel()
self.main_panel.setLayout(MigLayout())
dir_panel = JPanel()
dir_panel.setLayout(BoxLayout(dir_panel, BoxLayout.X_AXIS))
dir_label = JLabel('Experiment Folder:')
dir_panel.add(dir_label)
self.dir_text_field = JTextField(10)
self.dir_text_field.addActionListener(
ActionListenerFactory(self, self.text_field_al))
dir_panel.add(self.dir_text_field)
dir_button = JButton('open')
dir_button.addActionListener(
ActionListenerFactory(self, self.choose_dir_al))
dir_panel.add(dir_button)
self.main_panel.add(dir_panel, 'growx, spanx, pushx, wrap')
add_key_args(self.main_panel, 'close_w',
ActionListenerFactory(self, self.close_al), KeyEvent.VK_W,
Toolkit.getDefaultToolkit().getMenuShortcutKeyMask())
self.add(self.main_panel, BorderLayout.CENTER)
self.setPreferredSize(Dimension(500, 400))
self.pack()
self.setLocationRelativeTo(None)
self.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE)
self.setVisible(True)
def make_chf_panel(self):
""" chf --> common hseg files """
chf_panel = JPanel()
# chf_panel.setLayout(BoxLayout(chf_panel, BoxLayout.Y_AXIS))
chf_panel.setLayout(MigLayout('insets 0'))
# chf_panel.setAlignmentX(Component.LEFT_ALIGNMENT)
chf_files_label = JLabel('Hemisegment cells')
chf_files_text = JTextArea(
BobGui.archetype_to_str(
self.exper.hseg_cell_files_cab().archetype))
chf_panel.add(chf_files_label, 'growx, wrap')
chf_panel.add(chf_files_text, 'grow, wrap')
chf_files_label = JLabel('Hemisegment binary image files')
chf_files_text = JTextArea(
BobGui.archetype_to_str(self.exper.hseg_bin_files_cab().archetype))
chf_panel.add(chf_files_label, 'growx, wrap')
chf_panel.add(chf_files_text, 'grow, wrap')
chf_files_label = JLabel('Other hemisegment files')
chf_files_text = JTextArea(
BobGui.archetype_to_str(self.exper.hseg_files_cab().archetype))
chf_panel.add(chf_files_label, 'growx, wrap')
chf_panel.add(chf_files_text, 'grow')
# chf_label = JLabel('Common Hemeisegment Files')
# # chf_label.setAlignmentX(Component.LEFT_ALIGNMENT)
#
# chf_panel.add(chf_label, 'grow, wrap')
#
# chf_text_area = JTextArea(at_str)
# chf_panel.add(chf_text_area, 'grow, push, span')
return chf_panel
def make_hseg_tree_panel(self):
root = DefaultMutableTreeNode(self.exper.name)
for hseg in self.exper.hsegs():
hseg_node = DefaultMutableTreeNode(hseg.name)
root.add(hseg_node)
hseg_at_deviations = self.exper.hseg_files_cab(
).archetype_deviations
if len(hseg_at_deviations[hseg.name]) > 0:
for definer, file_names in hseg_at_deviations[
hseg.name].items():
for file_name in file_names:
node_str = definer + ': ' + file_name
temp = DefaultMutableTreeNode(node_str)
hseg_node.add(temp)
hseg_tree = JTree(root)
hseg_tree.setCellRenderer(BobPyTreeCellRenderer())
hseg_scroll_pane = JScrollPane()
hseg_scroll_pane.getViewport().setView((hseg_tree))
hseg_panel = JPanel(MigLayout('insets 0'))
hseg_panel.add(hseg_scroll_pane, 'grow, span, push, wrap')
run_button = JButton('Run')
run_button.addActionListener(ActionListenerFactory(self, self.run_al))
rerun_button = JButton('Rerun')
rerun_button.addActionListener(
ActionListenerFactory(self, self.rerun_al))
hseg_panel.add(run_button)
hseg_panel.add(rerun_button)
return hseg_panel
def showStackOverlayWindow(self):
all = JPanel()
all.setLayout(MigLayout())
self.imageIDs = WindowManager.getIDList()
self.imageNames = []
if self.imageIDs is None:
IJ.error(
"No open images",
"Stack Overlay requires at least one image to be already open."
)
return
for i in self.imageIDs:
self.imageNames.append(WindowManager.getImage(i).getTitle())
self.baseImageBox = JComboBox(self.imageNames)
baseImageBoxLabel = JLabel("Base image")
self.baseImageBox.setSelectedIndex(0)
all.add(baseImageBoxLabel)
all.add(self.baseImageBox, "wrap")
self.overlayImageBox = JComboBox(self.imageNames)
overlayImageBoxLabel = JLabel("Overlay image")
if len(self.imageNames) > 1:
self.overlayImageBox.setSelectedIndex(1)
all.add(overlayImageBoxLabel)
all.add(self.overlayImageBox, "wrap")
all.add(JSeparator(SwingConstants.HORIZONTAL), "span, wrap")
overlayStyleFrame = JPanel()
overlayStyleFrame.setLayout(MigLayout())
overlayStyleFrame.setBorder(
BorderFactory.createCompoundBorder(
BorderFactory.createTitledBorder("Overlay Style"),
BorderFactory.createEmptyBorder(5, 5, 5, 5)))
colorLabel = JLabel("Overlay color")
self.overlayColorPreviewLabel = JLabel(" ")
self.overlayColorPreviewLabel.setBorder(
BorderFactory.createEmptyBorder(0, 0, 1, 0))
self.overlayColorPreviewLabel.setOpaque(True)
self.overlayColorPreviewLabel.setBackground(Color.red)
self.overlayColor = Color.red
colorPicker = JColorChooser()
colorPicker.setPreviewPanel(self.overlayColorPreviewLabel)
colorButton = JButton("Select color...",
actionPerformed=self.showColorChooser)
opacityLabel = JLabel("Overlay opacity (%)")
opacitySpinnerModel = SpinnerNumberModel(100, 0, 100, 1)
self.opacitySpinner = JSpinner(opacitySpinnerModel)
overlayStyleFrame.add(colorLabel)
overlayStyleFrame.add(self.overlayColorPreviewLabel)
overlayStyleFrame.add(colorButton, "wrap")
overlayStyleFrame.add(opacityLabel)
overlayStyleFrame.add(self.opacitySpinner, "wrap")
all.add(overlayStyleFrame, "span, wrap")
self.virtualStackCheckbox = JCheckBox("Use Virtual Stack", True)
all.add(self.virtualStackCheckbox, "span, wrap")
# TODO: add non-thermonuclear cancel button functionality
overlayCancelButton = JButton("Cancel", actionPerformed=self.onQuit)
overlayStartButton = JButton("Overlay images",
actionPerformed=self.overlayImages)
all.add(overlayCancelButton, "gapleft push")
all.add(overlayStartButton, "gapleft push")
self.frame = JFrame("Stack Overlay")
self.frame.getContentPane().add(JScrollPane(all))
self.frame.pack()
self.frame.setLocationRelativeTo(None)
self.frame.setVisible(True)