def test_mst_kruskal(self):
sn = self.simpleWeightedNet
sn_minST = netio.loadNet(
self.folder +
"testData/transforms/simpleWeightedNet_minSpanningTree.edg")
self.assertEqual(sorted(transforms.mst_kruskal(sn)), sorted(sn_minST))
def setUp(self):
self.folder=os.path.dirname(netio.__file__)+os.path.join("a","tests","")[1:]
self.simpleWeightedNet=netio.loadNet(self.folder+"testData/simpleWeightedNet.edg")
self.sn_properties1=self.folder+"testData/nodeProperties/simpleWeightedNet_properties1.txt"
self.sn_properties1_nolabels=self.folder+"testData/nodeProperties/simpleWeightedNet_properties1_nolabels.txt"
def setUp(self):
self.folder = os.path.dirname(transforms.__file__) + os.path.join(
"a", "tests", "")[1:]
self.simpleWeightedNet = netio.loadNet(
self.folder + "testData/simpleWeightedNet.edg")
if __name__ == '__main__':
# List of currently accepted formats.
in_formats = ('edg',)
out_formats = ('edg', 'mat', 'gml', 'net')
# Get the input and output file names. If anything goes wrong,
# print the documentation and exit.
try:
inputFormat = sys.argv[1]
outputFormat = sys.argv[2]
if len(sys.argv) > 3:
behaviour = sys.argv[3]
else:
behaviour = 'simple'
if not (inputFormat in in_formats and
outputFormat in out_formats and
behaviour in ('simple', 'mutual')):
raise
except:
sys.stderr.write(__doc__)
exit(1)
mE = (True if behaviour == 'mutual' else False)
# Read in the network and write it out.
netio.writeNet(netio.loadNet(sys.stdin, fileType=inputFormat,
numerical=True, mutualEdges=mE,
allowSelfEdges=False),
sys.stdout, fileType=outputFormat)
The network under `nc`.
"""
print_statistics(nc, ncName, net)
plot_commSizeDist(nc, ncName)
if net is not None:
plot_avgCommWeight(nc, ncName, net)
if __name__ == '__main__':
# Read in the community structure.
try:
commFileName = sys.argv[1]
ncName = sys.argv[2]
netFileName = ""
if len(sys.argv) > 3:
netFileName = sys.argv[3]
except:
sys.stderr.write(__doc__)
# Read in the community structure.
with open(commFileName, 'r') as f:
nc = communities.NodeCover(inputFile=f)
# Read in the network (if given)
net = None
if netFileName:
net = netio.loadNet(netFileName)
# Plot everything.
plot_all(nc, ncName, net)
The network under `nc`.
"""
print_statistics(nc, ncName, net)
plot_commSizeDist(nc, ncName)
if net is not None:
plot_avgCommWeight(nc, ncName, net)
if __name__ == '__main__':
# Read in the community structure.
try:
commFileName = sys.argv[1]
ncName = sys.argv[2]
netFileName = ""
if len(sys.argv) > 3:
netFileName = sys.argv[3]
except:
sys.stderr.write(__doc__)
# Read in the community structure.
with open(commFileName, 'r') as f:
nc = communities.NodeCover(inputFile=f)
# Read in the network (if given)
net = None
if netFileName:
net = netio.loadNet(netFileName)
# Plot everything.
plot_all(nc, ncName, net)
def test_mst_kruskal(self): sn=self.simpleWeightedNet sn_minST=netio.loadNet(self.folder+"testData/transforms/simpleWeightedNet_minSpanningTree.edg") self.assertEqual(sorted(transforms.mst_kruskal(sn)),sorted(sn_minST))
def setUp(self):
self.folder=os.path.dirname(transforms.__file__)+os.path.join("a","tests","")[1:]
self.simpleWeightedNet=netio.loadNet(self.folder+"testData/simpleWeightedNet.edg")