def test_passaction(env_name='PerceptualDecisionMaking-v0',
num_steps=1000,
verbose=True):
"""
Test pass-action wrapper.
TODO: explain wrapper
Parameters
----------
env_name : str, optional
enviroment to wrap.. The default is 'PerceptualDecisionMaking-v0'.
num_steps : int, optional
number of steps to run the environment (1000)
verbose : boolean, optional
whether to print observation and action (False)
Returns
-------
None.
"""
env = gym.make(env_name)
env = PassAction(env)
env.reset()
for stp in range(num_steps):
action = env.action_space.sample()
obs, rew, done, info = env.step(action)
assert obs[-1] == action, 'Previous action is not part of observation'
if verbose:
print(obs)
print(action)
print('--------')
if done:
env.reset()
def test_passaction(env_name, num_steps=10000, verbose=False, **envArgs):
env = gym.make(env_name, **envArgs)
env = PassAction(env)
env.reset()
for stp in range(num_steps):
action = env.action_space.sample()
obs, rew, done, info = env.step(action)
if verbose:
print(obs)
print(action)
print('--------')
if done:
env.reset()
def test_concat_wrpprs_th_vch_pssr_pssa(env_name, num_steps=100000, probs=0.8,
num_blocks=16, verbose=False, num_ch=6,
variable_nch=True):
env = gym.make(env_name, **{'n_ch': num_ch})
env = TrialHistory(env, probs=probs,
rand_blcks=True, blk_ch_prob=0.001) # using random blocks!
if variable_nch:
env = Variable_nch(env, block_nch=1000, blocks_probs=[0.2, 0.2, 0.2,
0.2, 0.2])
transitions = np.zeros((num_blocks, num_ch, num_ch))
else:
transitions = np.zeros((num_blocks, num_ch, num_ch))
env = PassReward(env)
env = PassAction(env)
env.reset()
num_tr_blks = np.zeros((num_blocks,))
blk_id = []
blk = []
gt = []
nch = []
prev_gt = 1
for stp in range(num_steps):
action = env.action_space.sample()
obs, rew, done, info = env.step(action)
if done:
env.reset()
if info['new_trial'] and verbose:
blk_id, indx = check_blk_id(blk_id, info['curr_block'], num_blocks)
# print(info['curr_block'])
# print('-------------')
blk.append(info['curr_block'])
gt.append(info['gt'])
if variable_nch:
nch.append(info['nch'])
if len(nch) > 2 and 2*[nch[-1]] == nch[-3:-1] and\
2*[blk[-1]] == blk[-3:-1] and\
indx != -1:
num_tr_blks[indx] += 1
transitions[indx, prev_gt, info['gt']-1] += 1
if prev_gt > info['nch'] or info['gt']-1 > info['nch']:
pass
else:
nch.append(num_ch)
if blk[-1] == blk[-2] and indx != -1:
num_tr_blks[indx] += 1
transitions[indx, prev_gt, info['gt']-1] += 1
prev_gt = info['gt']-1
if verbose:
print(blk_id)
_, ax = plt.subplots(nrows=2, ncols=1, sharex=True)
ax[0].plot(np.array(blk[:20000])/(10**(num_ch-1)), '-+')
ax[0].plot(nch[:20000], '-+')
ax[1].plot(gt[:20000], '-+')
num_cols_rows = int(np.sqrt(num_blocks))
_, ax1 = plt.subplots(ncols=num_cols_rows, nrows=num_cols_rows)
ax1 = ax1.flatten()
_, ax2 = plt.subplots(ncols=num_cols_rows, nrows=num_cols_rows)
ax2 = ax2.flatten()
for ind_blk in range(num_blocks):
norm_counts = transitions[ind_blk, :, :]
ax1[ind_blk].imshow(norm_counts)
ax1[ind_blk].set_title(str(blk_id[ind_blk]) +
' (N='+str(num_tr_blks[ind_blk])+')',
fontsize=6)
nxt_tr_counts = np.sum(norm_counts, axis=1).reshape((-1, 1))
norm_counts = norm_counts / nxt_tr_counts
ax2[ind_blk].imshow(norm_counts)
ax2[ind_blk].set_title(str(blk_id[ind_blk]) +
' (N='+str(num_tr_blks[ind_blk])+')',
fontsize=6)
data = {'transitions': transitions, 'blk': blk, 'blk_id': blk_id, 'gt': gt,
'nch': nch}
return data
def test_concat_wrpprs_th_vch_pssr_pssa(env_name,
num_steps=100000,
probs=0.8,
num_blocks=16,
verbose=False,
num_ch=8,
variable_nch=True,
env_args={}):
env_args['n_ch'] = num_ch
env_args['zero_irrelevant_stim'] = True
env_args['ob_histblock'] = True
env = gym.make(env_name, **env_args)
env = TrialHistoryEvolution(env,
probs=probs,
ctx_ch_prob=0.005,
predef_tr_mats=True,
balanced_probs=True,
num_contexts=1)
env = Variable_nch(env, block_nch=5000000000, prob_12=0.05, sorted_ch=True)
transitions = np.zeros((num_blocks, num_ch, num_ch))
env = PassReward(env)
env = PassAction(env)
env.reset()
num_tr_blks = np.zeros((num_blocks, ))
blk_id = []
s_chs = []
blk = []
blk_stp = []
gt = []
nch = []
obs_mat = []
prev_gt = 1
for stp in range(num_steps):
action = env.action_space.sample()
obs, rew, done, info = env.step(action)
obs_mat.append(obs)
blk_stp.append(info['curr_block'])
if done:
env.reset()
if info['new_trial'] and verbose:
# print(info['curr_block'])
# print('-------------')
blk.append(info['curr_block'])
gt.append(info['gt'])
sel_chs = list(info['sel_chs'].replace('-', ''))
sel_chs = [int(x) - 1 for x in sel_chs]
blk_id, indx = check_blk_id(blk_id, info['curr_block'], num_blocks,
sel_chs)
s_chs.append(info['sel_chs'])
nch.append(info['nch'])
if len(nch) > 2 and 2*[nch[-1]] == nch[-3:-1] and\
2*[blk[-1]] == blk[-3:-1] and\
indx != -1:
num_tr_blks[indx] += 1
transitions[indx, prev_gt, info['gt'] - 1] += 1
if prev_gt > info['nch'] or info['gt'] - 1 > info['nch']:
pass
prev_gt = info['gt'] - 1
if verbose:
print(blk_id)
sel_choices, counts = np.unique(s_chs, return_counts=1)
print('\nSelected choices and frequencies:')
print(sel_choices)
print(counts / np.sum(counts))
tr_blks, counts =\
np.unique(np.array(blk)[np.array(s_chs) == '1-2'],
return_counts=1)
print('\n2AFC task transition matrices and frequencies:')
print(tr_blks)
print(counts / np.sum(counts))
_, ax = plt.subplots(nrows=1, ncols=1)
obs_mat = np.array(obs_mat)
ax.imshow(obs_mat[10000:20000, :].T, aspect='auto')
_, ax = plt.subplots(nrows=2, ncols=1, sharex=True)
blk_int = [int(x.replace('-', '')) for x in blk]
ax[0].plot(np.array(blk_int[:20000]) / (10**(num_ch - 1)),
'-+',
label='tr-blck')
ax[0].plot(nch[:20000], '-+', label='num choices')
ax[1].plot(gt[:20000], '-+', label='correct side')
ax[1].set_xlabel('Trials')
ax[0].legend()
ax[1].legend()
num_cols_rows = int(np.sqrt(num_blocks))
_, ax1 = plt.subplots(ncols=num_cols_rows, nrows=num_cols_rows)
ax1 = ax1.flatten()
_, ax2 = plt.subplots(ncols=num_cols_rows, nrows=num_cols_rows)
ax2 = ax2.flatten()
for ind_blk in range(len(blk_id)):
norm_counts = transitions[ind_blk, :, :]
ax1[ind_blk].imshow(norm_counts)
ax1[ind_blk].set_title(str(blk_id[ind_blk]) + ' (N=' +
str(num_tr_blks[ind_blk]) + ')',
fontsize=6)
nxt_tr_counts = np.sum(norm_counts, axis=1).reshape((-1, 1))
norm_counts = norm_counts / nxt_tr_counts
ax2[ind_blk].imshow(norm_counts)
ax2[ind_blk].set_title(str(blk_id[ind_blk]) + ' (N=' +
str(num_tr_blks[ind_blk]) + ')',
fontsize=6)
data = {
'transitions': transitions,
'blk': blk,
'blk_id': blk_id,
'gt': gt,
'nch': nch,
's_ch': s_chs,
'obs_mat': obs_mat,
'blk_stp': blk_stp
}
return data
def test_concat_wrpprs_th_vch_pssr_pssa(
env_name='NAltPerceptualDecisionMaking-v0',
num_steps=10000,
probs=0.8,
num_blocks=16,
verbose=True,
num_ch=6,
variable_nch=True,
th=0.5,
rand_pretr=False,
env_args={}):
var_nch_block = 100
var_nch_perf_th = 0.8
tr_hist_block = 20
tr_hist_perf_th = 0.5
env_args['n_ch'] = num_ch
env_args['zero_irrelevant_stim'] = True
env_args['ob_histblock'] = False
env = gym.make(env_name, **env_args)
env = TrialHistoryEvolution(env,
probs=probs,
ctx_ch_prob=0.05,
predef_tr_mats=True,
balanced_probs=True,
num_contexts=num_blocks,
rand_pretrain=rand_pretr)
env = Variable_nch(env,
block_nch=var_nch_block,
prob_12=0.5,
sorted_ch=True)
# env = PerfPhases(env, start_ph=3, step_ph=1, wait=100,
# flag_key='above_perf_th_vnch')
# env = ComputeMeanPerf(env, perf_th=[var_nch_perf_th, tr_hist_perf_th],
# perf_w=[var_nch_block, tr_hist_block],
# key=['vnch', 'trh'],
# cond_on_coh=[False, True])
transitions = np.zeros((num_blocks, num_ch, num_ch))
env = PassReward(env)
env = PassAction(env)
env.reset()
num_tr_blks = np.zeros((num_blocks, ))
blk_id = []
s_chs = []
blk = []
blk_stp = []
gt = []
nch = []
obs_mat = []
perf_vnch = []
perf_trh = []
phase = []
prev_gt = 1
obs_cum = np.zeros((num_ch, ))
for stp in range(num_steps):
if (obs_cum - np.mean(obs_cum) > th).any():
action = np.argmax(obs_cum - np.mean(obs_cum)) + 1
else:
action = 0
obs, rew, done, info = env.step(action)
obs_mat.append(obs)
blk_stp.append(info['curr_block'])
if done:
env.reset()
if info['new_trial'] and verbose:
# perf_vnch.append(info['mean_perf_'+str(var_nch_perf_th)+'_' +
# str(var_nch_block)+'_vnch'])
# perf_trh.append(info['mean_perf_'+str(tr_hist_perf_th)+'_' +
# str(tr_hist_block)+'_trh'])
# phase.append(info['phase'])
obs_cum = np.zeros((env_args['n_ch'], ))
# print(info['curr_block'])
# print('-------------')
blk.append(info['curr_block'])
gt.append(info['gt'])
sel_chs = list(info['sel_chs'].replace('-', ''))
sel_chs = [int(x) - 1 for x in sel_chs]
blk_id, indx = check_blk_id(blk_id, info['curr_block'], num_blocks,
sel_chs)
s_chs.append(info['sel_chs'])
nch.append(info['nch'])
if len(nch) > 2 and 2*[nch[-1]] == nch[-3:-1] and\
2*[blk[-1]] == blk[-3:-1] and\
indx != -1:
num_tr_blks[indx] += 1
transitions[indx, prev_gt, info['gt'] - 1] += 1
if prev_gt > info['nch'] or info['gt'] - 1 > info['nch']:
pass
prev_gt = info['gt'] - 1
else:
obs_cum += obs[1:num_ch + 1]
if verbose:
sel_choices, counts = np.unique(s_chs, return_counts=1)
print('\nSelected choices and frequencies:')
print(sel_choices)
print(counts / np.sum(counts))
blocks, counts = np.unique(blk, return_counts=1)
print('\nTransition matrices and frequencies:')
print(blocks)
print(counts / np.sum(counts))
tr_blks, counts = np.unique(np.array(blk)[np.array(s_chs) == '1-2'],
return_counts=1)
print('\n2AFC task transition matrices and frequencies:')
print(tr_blks)
print(counts / np.sum(counts))
_, ax = plt.subplots(nrows=1, ncols=1)
obs_mat = np.array(obs_mat)
ax.imshow(obs_mat.T, aspect='auto')
_, ax = plt.subplots(nrows=3, ncols=1, sharex=True)
blk_int = [int(x.replace('-', '')) for x in blk]
ax[0].plot(np.array(blk_int[:20000]) / (10**(num_ch - 1)),
'-+',
label='tr-blck')
ax[0].plot(nch[:20000], '-+', label='num choices')
ax[0].plot(phase[:20000], '-+', label='phase')
ax[1].plot(gt[:20000], '-+', label='correct side')
ax[2].set_xlabel('Trials')
ax[2].plot(perf_vnch[:20000],
'-+',
label='performance vnch (w=' + str(var_nch_block) +
', th=' + str(var_nch_perf_th) + ')')
ax[2].plot(perf_trh[:20000],
'-+',
label='performance trh (w=' + str(tr_hist_block) + ', th=' +
str(tr_hist_perf_th) + ')')
ax[0].legend()
ax[1].legend()
ax[2].legend()
num_cols_rows = int(np.sqrt(num_blocks))
_, ax1 = plt.subplots(ncols=num_cols_rows, nrows=num_cols_rows)
ax1 = ax1.flatten()
_, ax2 = plt.subplots(ncols=num_cols_rows, nrows=num_cols_rows)
ax2 = ax2.flatten()
for ind_blk in range(len(blk_id)):
norm_counts = transitions[ind_blk, :, :]
ax1[ind_blk].imshow(norm_counts)
ax1[ind_blk].set_title(str(blk_id[ind_blk]) + ' (N=' +
str(num_tr_blks[ind_blk]) + ')',
fontsize=6)
nxt_tr_counts = np.sum(norm_counts, axis=1).reshape((-1, 1))
norm_counts = norm_counts / nxt_tr_counts
ax2[ind_blk].imshow(norm_counts)
ax2[ind_blk].set_title(str(blk_id[ind_blk]) + ' (N=' +
str(num_tr_blks[ind_blk]) + ')',
fontsize=6)
data = {
'transitions': transitions,
'blk': blk,
'blk_id': blk_id,
'gt': gt,
'nch': nch,
's_ch': s_chs,
'obs_mat': obs_mat,
'blk_stp': blk_stp
}
return data
def test_stim_acc_signal(env='NAltPerceptualDecisionMaking-v0',
num_steps=100,
verbose=True):
"""
Test pass-reward wrapper.
Parameters
----------
env_name : str, optional
enviroment to wrap.. The default is 'PerceptualDecisionMaking-v0'.
num_steps : int, optional
number of steps to run the environment (1000)
verbose : boolean, optional
whether to print observation and reward (False)
Returns
-------
None.
"""
env_args = {
'timing': {
'fixation': 100,
'stimulus': 300,
'decision': 100
},
'n_ch': 4
}
env = gym.make(env, **env_args)
env = StimAccSignal(env)
env = PassAction(env)
env = PassReward(env)
obs = env.reset()
if verbose:
observations = []
reward = []
actions = []
gt = []
new_trials = []
for stp in range(num_steps):
action = env.action_space.sample()
obs, rew, done, info = env.step(action)
if verbose:
observations.append(obs)
actions.append(action)
reward.append(rew)
new_trials.append(info['new_trial'])
gt.append(info['gt'])
if done:
env.reset()
if verbose:
observations = np.array(observations)
_, ax = plt.subplots(nrows=3, ncols=1, sharex=True)
ax = ax.flatten()
ax[0].imshow(observations.T, aspect='auto')
ax[1].plot(actions, label='Actions')
ax[1].plot(gt, '--', label='gt')
ax[1].set_xlim([-.5, len(actions) - 0.5])
ax[1].legend()
ax[2].plot(reward)
end_of_trial = np.where(new_trials)[0]
for a in ax:
ylim = a.get_ylim()
for ch in end_of_trial:
a.plot([ch, ch], ylim, '--c')
ax[2].set_xlim([-.5, len(actions) - 0.5])
def test_learn_trans_matrix(env='NAltPerceptualDecisionMaking-v0',
num_steps=100,
verbose=True,
n_ch=2,
th=0.01):
"""
Test pass-reward wrapper.
Parameters
----------
env_name : str, optional
enviroment to wrap.. The default is 'PerceptualDecisionMaking-v0'.
num_steps : int, optional
number of steps to run the environment (1000)
verbose : boolean, optional
whether to print observation and reward (False)
Returns
-------
None.
"""
env_args = {
'timing': {
'fixation': 100,
'stimulus': 300,
'decision': 100
},
'n_ch': n_ch
}
env = gym.make(env, **env_args)
env = TrialHistoryEvolution(env,
probs=0.9,
predef_tr_mats=True,
num_contexts=1)
env = LearnTransMatrix(env)
env = PassAction(env)
env = PassReward(env)
obs = env.reset()
if verbose:
observations = []
reward = []
actions = []
gt = []
new_trials = []
obs_cum = np.zeros((n_ch, ))
for stp in range(num_steps):
if (obs_cum - np.mean(obs_cum) > th).any():
action = np.argmax(obs_cum - np.mean(obs_cum)) + 1
else:
action = 0
obs, rew, done, info = env.step(action)
if info['new_trial']:
obs_cum = np.zeros((env_args['n_ch'], ))
else:
obs_cum += obs[1:n_ch + 1]
if verbose:
observations.append(obs)
actions.append(action)
reward.append(rew)
new_trials.append(info['new_trial'])
gt.append(info['gt'])
if done:
env.reset()
if verbose:
observations = np.array(observations)
_, ax = plt.subplots(nrows=3, ncols=1, sharex=True)
ax = ax.flatten()
ax[0].imshow(observations.T, aspect='auto')
ax[1].plot(actions, label='Actions')
ax[1].plot(gt, '--', label='gt')
ax[1].set_xlim([-.5, len(actions) - 0.5])
ax[1].legend()
ax[2].plot(reward)
end_of_trial = np.where(new_trials)[0]
for a in ax:
ylim = a.get_ylim()
for ch in end_of_trial:
a.plot([ch, ch], ylim, '--c')
ax[2].set_xlim([-.5, len(actions) - 0.5])