Exemple #1
0
 def pump_init(self, pump_port):
     self.pser = serial.Serial(pump_port, 19200, timeout=0.1)
     print("connected to", self.pser.name)
     pumps = new_era.find_pumps(self.pser)
     self.pump = pumps[0]
     self.infuse = False
     new_era.set_diameter(self.pser, self.pump, dia_1ml)
     new_era.set_direct(self.pser, self.pump, 1)
     new_era.set_rate(self.pser, self.pump, flowrate)
Exemple #2
0
 def pump_init(self, pump_port):
     self.pser = serial.Serial(pump_port, 19200, timeout=.1)
     print('connected to', self.pser.name)
     pumps = new_era.find_pumps(self.pser)
     self.pump = pumps[0]
     self.infuse = False
     new_era.set_diameter(self.pser, self.pump, dia_1ml)
     new_era.set_direct(self.pser, self.pump, 1)
     new_era.set_rate(self.pser, self.pump, flowrate)
Exemple #3
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    def __init__(self):
        try:
            self.ser = serial.Serial(serial_port, 19200, timeout=.1)
            print('Connected to:', self.ser.name)
            pumps = new_era.find_pumps(self.ser)
            print(pumps)
            self.pump = pumps[0]
        except OSError:
            print('Cannot find the port.')
            #sys.exit(1)

        self._app = QtWidgets.QApplication(sys.argv)
        self._window = QtWidgets.QWidget()
        self._window.closeEvent = self.shutDown

        self._ui = pump_design.Ui_Form()
        self._ui.setupUi(self._window)

        # set the default value
        self.set_default()
        self.n_steps = 0

        # Following are the definition of button and lineEdit functions
        self._ui.pushButton_godefault.clicked.connect(self.go_default)
        self._ui.pushButton_run.clicked.connect(self.run_pump)
        self._ui.pushButton_stop.clicked.connect(self.stop_pump)
        self._ui.pushButton_adds.clicked.connect(
            partial(self.add_step, None, None, None))
        self._ui.pushButton_dels.clicked.connect(self.delete_steps)
        self._ui.pushButton_savepro.clicked.connect(self.save_protocol)
        self._ui.pushButton_loadpro.clicked.connect(self.load_protocol)
        self._ui.pushButton_runpro.clicked.connect(self.run_protocol)
        self._ui.pushButton_clearpro.clicked.connect(self.clear_protocol)
        self._ui.lineEdit_rate.returnPressed.connect(partial(self.set_rate))
        self._ui.lineEdit_volume.returnPressed.connect(partial(self.set_vol))
        # ------------------Done with definition of buton and lineEdit functions
        self.protocol_threads = deque()
        self.protocol_list = deque()
        self.isrunning = False

        self._window.show()
        self._app.exec_()
Exemple #4
0
    def initUI(self):      

        self.ser = serial.Serial(serial_port,19200,timeout=.1)
        print 'connected to',self.ser.name
        
        # set grid layout
        grid = QtGui.QGridLayout()
        grid.setSpacing(7)
        
        # setup two buttons along top
        self.runbtn = QtGui.QPushButton('Run/Update',self)
        grid.addWidget(self.runbtn,1,2)
        self.runbtn.setCheckable(True)
        self.runbtn.clicked.connect(self.run_update)

        self.stopbtn = QtGui.QPushButton('Stop',self)
        grid.addWidget(self.stopbtn,1,3)
        self.stopbtn.setCheckable(True)
        self.stopbtn.clicked.connect(self.stop_all)

        self.volbtn = QtGui.QPushButton('Deliver volume',self)
        grid.addWidget(self.volbtn,1,4)
        self.volbtn.setCheckable(True)
        self.volbtn.clicked.connect(self.deliver_volume)


        self.habitbtn = QtGui.QPushButton('Habituation',self)
        grid.addWidget(self.habitbtn,1,5)
        self.habitbtn.setCheckable(True)
        self.habitbtn.clicked.connect(self.habituate)
        

        # optional column labels
        grid.addWidget(QtGui.QLabel('Pump number'),2,0)
        grid.addWidget(QtGui.QLabel('Syringe'),2,1)
        grid.addWidget(QtGui.QLabel('Contents'),2,2)
        grid.addWidget(QtGui.QLabel('Flow rate'),2,3)
        grid.addWidget(QtGui.QLabel('Volume to deliver'), 2,4)   
        grid.addWidget(QtGui.QLabel('Habituation'), 2,5)   
        grid.addWidget(QtGui.QLabel('Current flow rate'),2,6)
          
        
        
        # find pumps
        pumps = new_era.find_pumps(self.ser)
        
        # interate over pumps, adding a row for each
        self.mapper = QtCore.QSignalMapper(self)
        self.primemapper = QtCore.QSignalMapper(self)
        self.currflow = dict()
        self.rates = dict()
        self.prime_btns = dict()
        self.volume = dict()
        for i,pump in enumerate(pumps):
            row = 3+i
            
            # add pump number
            pumplab = QtGui.QLabel('Pump %i'%pump)
            pumplab.setAlignment(QtCore.Qt.AlignHCenter)
            grid.addWidget(pumplab,row,0)

            # add syringe pulldown
            combo = QtGui.QComboBox(self)
            [combo.addItem(s) for s in sorted(syringes)]
            self.mapper.setMapping(combo,pump)
            combo.activated.connect(self.mapper.map)
            grid.addWidget(combo,row,1)

            # add textbox to put syring contents
            grid.addWidget(QtGui.QLineEdit(),row,2)

            # add textbox to enter flow rates
            self.rates[pump] = QtGui.QLineEdit(self)
            grid.addWidget(self.rates[pump],row,3)
            self.volume[pump] = QtGui.QLineEdit(self)
            grid.addWidget(self.volume[pump],row, 4)            
#            self.volume[pump] 
            
            # add label to show current flow rates
            self.currflow[pump] = QtGui.QLabel(self)
            self.currflow[pump].setAlignment(QtCore.Qt.AlignHCenter)
            grid.addWidget(self.currflow[pump],row,6)

            # add prime button
            btn = QtGui.QPushButton('Prime',self)
            btn.setCheckable(True)# makes the button toggleable
            self.primemapper.setMapping(btn,pump)
            btn.clicked.connect(self.primemapper.map)
            grid.addWidget(btn,row,7)
            self.prime_btns[pump] = btn


        # mapper thing
        self.mapper.mapped.connect(self.update_syringe)        
        self.primemapper.mapped.connect(self.prime_pumps)        

        # set up the status bar
        self.curr_state = 'Running'
        self.statusbar = QtGui.QLabel(self)
        grid.addWidget(self.statusbar,1,6)
        self.statusbar.setText('Status: '+self.curr_state)
        
        # set up the last command bar
        self.commandbar = QtGui.QLabel(self)
        grid.addWidget(self.commandbar,row+1,0,1,4)
        
        # make the prime state: a set containing the priming pumps
        self.prime_state = set()

        #initialize: set all flow rates to zero
        self.run_update()
        self.stop_all()
        [self.update_syringe(p) for p in pumps]
        self.commandbar.setText('')

        # keyboard shortcuts
        QtGui.QShortcut(    QtGui.QKeySequence('Space'),self,self.stop_all)

        # format the page
        self.setLayout(grid)
        self.setWindowTitle('Pump control')
        #self.setWindowFlags(self.windowFlags() | QtCore.Qt.WindowStaysOnTopHint) # always on top
        self.show()
Exemple #5
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    def initUI(self):

        self.ser = serial.Serial(serial_port, 19200, timeout=.1)
        print 'connected to', self.ser.name

        # set grid layout
        grid = QtGui.QGridLayout()
        grid.setSpacing(5)

        # setup two buttons along top
        self.runbtn = QtGui.QPushButton('Run/Update', self)
        grid.addWidget(self.runbtn, 1, 2)
        self.runbtn.setCheckable(True)
        self.runbtn.clicked.connect(self.run_update)

        self.stopbtn = QtGui.QPushButton('Stop', self)
        grid.addWidget(self.stopbtn, 1, 3)
        self.stopbtn.setCheckable(True)
        self.stopbtn.clicked.connect(self.stop_all)

        # setup timer stuff
        self.timerbtn = QtGui.QPushButton('Run with Timer', self)
        grid.addWidget(self.timerbtn, 2, 2, 1, 2)
        self.timerbtn.setCheckable(True)
        self.timerbtn.clicked.connect(self.run_update_timer)
        label = QtGui.QLabel('Set timer (in minutes):')
        label2 = QtGui.QLabel('Time remaining:')
        label.setAlignment(QtCore.Qt.AlignRight | QtCore.Qt.AlignVCenter)
        label2.setAlignment(QtCore.Qt.AlignRight | QtCore.Qt.AlignVCenter)
        grid.addWidget(label, 3, 1)

        grid.addWidget(label2, 3, 3)
        self.timein = QtGui.QLineEdit(self)
        grid.addWidget(self.timein, 3, 2)

        # create and display the timer
        self.label_time = QtGui.QLabel()
        self.timer = QtCore.QTimer()
        text = "--:--:--"
        font = QtGui.QFont("SansSerif", 16, QtGui.QFont.Bold)
        self.label_time.setFont(font)
        self.label_time.setText(text)
        grid.addWidget(self.label_time, 3, 4)

        # optional column labels
        grid.addWidget(QtGui.QLabel('Pump number'), 4, 0)
        grid.addWidget(QtGui.QLabel('Syringe'), 4, 1)
        grid.addWidget(QtGui.QLabel('Contents'), 4, 2)
        grid.addWidget(QtGui.QLabel('Flow rate'), 4, 3)
        grid.addWidget(QtGui.QLabel('Current flow rate'), 4, 4)

        # find pumps
        pumps = new_era.find_pumps(self.ser)

        # interate over pumps, adding a row for each
        self.mapper = QtCore.QSignalMapper(self)
        self.primemapper = QtCore.QSignalMapper(self)
        self.currflow = dict()
        self.rates = dict()
        self.prime_btns = dict()
        for i, pump in enumerate(pumps):
            row = 5 + i

            # add pump number
            pumplab = QtGui.QLabel('Pump %i' % pump)
            pumplab.setAlignment(QtCore.Qt.AlignHCenter)
            grid.addWidget(pumplab, row, 0)

            # add syringe pulldown
            combo = QtGui.QComboBox(self)
            [combo.addItem(s) for s in sorted(syringes)]
            self.mapper.setMapping(combo, pump)
            combo.activated.connect(self.mapper.map)
            grid.addWidget(combo, row, 1)

            # add textbox to put syring contents
            grid.addWidget(QtGui.QLineEdit(), row, 2)

            # add textbox to enter flow rates
            self.rates[pump] = QtGui.QLineEdit(self)
            grid.addWidget(self.rates[pump], row, 3)

            # add label to show current flow rates
            self.currflow[pump] = QtGui.QLabel(self)
            self.currflow[pump].setAlignment(QtCore.Qt.AlignHCenter)
            grid.addWidget(self.currflow[pump], row, 4)

            # add prime button
            btn = QtGui.QPushButton('Prime', self)
            btn.setCheckable(True)  # makes the button toggleable
            self.primemapper.setMapping(btn, pump)
            btn.clicked.connect(self.primemapper.map)
            grid.addWidget(btn, row, 5)
            self.prime_btns[pump] = btn

        # mapper thing
        self.mapper.mapped.connect(self.update_syringe)
        self.primemapper.mapped.connect(self.prime_pumps)

        # set up the status bar
        self.curr_state = 'Stopped'
        self.statusbar = QtGui.QLabel(self)
        grid.addWidget(self.statusbar, 1, 4)
        self.statusbar.setText('Status: ' + self.curr_state)

        # set up the last command bar
        self.commandbar = QtGui.QLabel(self)
        grid.addWidget(self.commandbar, row + 1, 0, 1, 4)

        # make the prime state: a set containing the priming pumps
        self.prime_state = set()

        #initialize: set all flow rates to zero
        self.run_update()
        self.stop_all()
        [self.update_syringe(p) for p in pumps]
        self.commandbar.setText('')

        # keyboard shortcuts
        QtGui.QShortcut(QtGui.QKeySequence('Space'), self, self.stop_all)

        # format the page
        self.setLayout(grid)
        self.setWindowTitle('Pump control')
        #self.setWindowFlags(self.windowFlags() | QtCore.Qt.WindowStaysOnTopHint) # always on top
        self.show()
Exemple #6
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    def initUI(self):

        self.ser = serial.Serial(serial_port, 19200, timeout=.1)
        print('connected to', self.ser.name)
        # set grid layout
        grid = QtWidgets.QGridLayout()
        grid.setSpacing(7)
        # setup two buttons along top
        self.runbtn = QtWidgets.QPushButton('Run/Update', self)
        grid.addWidget(self.runbtn, 1, 2)
        self.runbtn.setCheckable(True)
        self.runbtn.clicked.connect(self.run_update)

        self.stopbtn = QtWidgets.QPushButton('Stop', self)
        grid.addWidget(self.stopbtn, 1, 3)
        self.stopbtn.setCheckable(True)
        self.stopbtn.clicked.connect(self.stop_all)

        self.volbtn = QtWidgets.QPushButton('Deliver volume', self)
        grid.addWidget(self.volbtn, 1, 4)
        self.volbtn.setCheckable(True)
        self.volbtn.clicked.connect(self.deliver_volume)

        self.habitbtn = QtWidgets.QPushButton('Habituation', self)
        grid.addWidget(self.habitbtn, 1, 5)
        self.habitbtn.setCheckable(True)
        self.habitbtn.clicked.connect(self.habituate)

        # optional column labels
        grid.addWidget(QtWidgets.QLabel('Pump number'), 2, 0)
        grid.addWidget(QtWidgets.QLabel('Syringe'), 2, 1)
        grid.addWidget(QtWidgets.QLabel('Contents'), 2, 2)
        grid.addWidget(QtWidgets.QLabel('Flow rate'), 2, 3)
        grid.addWidget(QtWidgets.QLabel('Volume to deliver'), 2, 4)
        grid.addWidget(QtWidgets.QLabel('Habituation'), 2, 5)
        grid.addWidget(QtWidgets.QLabel('Current flow rate'), 2, 6)
        # find pumps
        pumps = new_era.find_pumps(self.ser)
        print("Find pumps:", pumps)

        # interate over pumps, adding a row for each
        self.mapper = QtCore.QSignalMapper(self)
        self.primemapper = QtCore.QSignalMapper(self)
        self.currflow = dict()
        self.rates = dict()
        self.prime_btns = dict()
        self.volume = dict()
        for i, pump in enumerate(pumps):
            row = 3 + i

            # add pump number
            pumplab = QtWidgets.QLabel('Pump %i' % pump)
            pumplab.setAlignment(QtCore.Qt.AlignHCenter)
            grid.addWidget(pumplab, row, 0)

            # add syringe pulldown
            combo = QtWidgets.QComboBox(self)
            [combo.addItem(s) for s in sorted(syringes)]
            self.mapper.setMapping(combo, pump)
            combo.activated.connect(self.mapper.map)
            grid.addWidget(combo, row, 1)

            # add textbox to put syring contents
            grid.addWidget(QtWidgets.QLineEdit(), row, 2)

            # add textbox to enter flow rates
            self.rates[pump] = QtWidgets.QLineEdit(self)
            grid.addWidget(self.rates[pump], row, 3)
            self.volume[pump] = QtWidgets.QLineEdit(self)
            grid.addWidget(self.volume[pump], row, 4)
            #            self.volume[pump]

            # add label to show current flow rates
            self.currflow[pump] = QtWidgets.QLabel(self)
            self.currflow[pump].setAlignment(QtCore.Qt.AlignHCenter)
            grid.addWidget(self.currflow[pump], row, 6)

            # add prime button
            btn = QtWidgets.QPushButton('Prime', self)
            btn.setCheckable(True)  # makes the button toggleable
            self.primemapper.setMapping(btn, pump)
            btn.clicked.connect(self.primemapper.map)
            grid.addWidget(btn, row, 7)
            self.prime_btns[pump] = btn

        # mapper thing
        self.mapper.mapped.connect(self.update_syringe)
        self.primemapper.mapped.connect(self.prime_pumps)

        # set up the status bar
        self.curr_state = 'Running'
        self.statusbar = QtWidgets.QLabel(self)
        grid.addWidget(self.statusbar, 1, 6)
        self.statusbar.setText('Status: ' + self.curr_state)

        # set up the last command bar
        self.commandbar = QtWidgets.QLabel(self)
        grid.addWidget(self.commandbar, row + 1, 0, 1, 4)

        # make the prime state: a set containing the priming pumps
        self.prime_state = set()

        #initialize: set all flow rates to zero
        self.run_update()
        self.stop_all()
        [self.update_syringe(p) for p in pumps]
        self.commandbar.setText('')

        # keyboard shortcuts
        QtWidgets.QShortcut(QtGui.QKeySequence('Space'), self, self.stop_all)

        # format the page
        self.setLayout(grid)
        self.setWindowTitle('Pump control')
        #self.setWindowFlags(self.windowFlags() | QtCore.Qt.WindowStaysOnTopHint) # always on top
        self.show()