def pump_init(self, pump_port):
self.pser = serial.Serial(pump_port, 19200, timeout=0.1)
print("connected to", self.pser.name)
pumps = new_era.find_pumps(self.pser)
self.pump = pumps[0]
self.infuse = False
new_era.set_diameter(self.pser, self.pump, dia_1ml)
new_era.set_direct(self.pser, self.pump, 1)
new_era.set_rate(self.pser, self.pump, flowrate)
def pump_init(self, pump_port):
self.pser = serial.Serial(pump_port, 19200, timeout=.1)
print('connected to', self.pser.name)
pumps = new_era.find_pumps(self.pser)
self.pump = pumps[0]
self.infuse = False
new_era.set_diameter(self.pser, self.pump, dia_1ml)
new_era.set_direct(self.pser, self.pump, 1)
new_era.set_rate(self.pser, self.pump, flowrate)
def __init__(self):
try:
self.ser = serial.Serial(serial_port, 19200, timeout=.1)
print('Connected to:', self.ser.name)
pumps = new_era.find_pumps(self.ser)
print(pumps)
self.pump = pumps[0]
except OSError:
print('Cannot find the port.')
#sys.exit(1)
self._app = QtWidgets.QApplication(sys.argv)
self._window = QtWidgets.QWidget()
self._window.closeEvent = self.shutDown
self._ui = pump_design.Ui_Form()
self._ui.setupUi(self._window)
# set the default value
self.set_default()
self.n_steps = 0
# Following are the definition of button and lineEdit functions
self._ui.pushButton_godefault.clicked.connect(self.go_default)
self._ui.pushButton_run.clicked.connect(self.run_pump)
self._ui.pushButton_stop.clicked.connect(self.stop_pump)
self._ui.pushButton_adds.clicked.connect(
partial(self.add_step, None, None, None))
self._ui.pushButton_dels.clicked.connect(self.delete_steps)
self._ui.pushButton_savepro.clicked.connect(self.save_protocol)
self._ui.pushButton_loadpro.clicked.connect(self.load_protocol)
self._ui.pushButton_runpro.clicked.connect(self.run_protocol)
self._ui.pushButton_clearpro.clicked.connect(self.clear_protocol)
self._ui.lineEdit_rate.returnPressed.connect(partial(self.set_rate))
self._ui.lineEdit_volume.returnPressed.connect(partial(self.set_vol))
# ------------------Done with definition of buton and lineEdit functions
self.protocol_threads = deque()
self.protocol_list = deque()
self.isrunning = False
self._window.show()
self._app.exec_()
def initUI(self):
self.ser = serial.Serial(serial_port,19200,timeout=.1)
print 'connected to',self.ser.name
# set grid layout
grid = QtGui.QGridLayout()
grid.setSpacing(7)
# setup two buttons along top
self.runbtn = QtGui.QPushButton('Run/Update',self)
grid.addWidget(self.runbtn,1,2)
self.runbtn.setCheckable(True)
self.runbtn.clicked.connect(self.run_update)
self.stopbtn = QtGui.QPushButton('Stop',self)
grid.addWidget(self.stopbtn,1,3)
self.stopbtn.setCheckable(True)
self.stopbtn.clicked.connect(self.stop_all)
self.volbtn = QtGui.QPushButton('Deliver volume',self)
grid.addWidget(self.volbtn,1,4)
self.volbtn.setCheckable(True)
self.volbtn.clicked.connect(self.deliver_volume)
self.habitbtn = QtGui.QPushButton('Habituation',self)
grid.addWidget(self.habitbtn,1,5)
self.habitbtn.setCheckable(True)
self.habitbtn.clicked.connect(self.habituate)
# optional column labels
grid.addWidget(QtGui.QLabel('Pump number'),2,0)
grid.addWidget(QtGui.QLabel('Syringe'),2,1)
grid.addWidget(QtGui.QLabel('Contents'),2,2)
grid.addWidget(QtGui.QLabel('Flow rate'),2,3)
grid.addWidget(QtGui.QLabel('Volume to deliver'), 2,4)
grid.addWidget(QtGui.QLabel('Habituation'), 2,5)
grid.addWidget(QtGui.QLabel('Current flow rate'),2,6)
# find pumps
pumps = new_era.find_pumps(self.ser)
# interate over pumps, adding a row for each
self.mapper = QtCore.QSignalMapper(self)
self.primemapper = QtCore.QSignalMapper(self)
self.currflow = dict()
self.rates = dict()
self.prime_btns = dict()
self.volume = dict()
for i,pump in enumerate(pumps):
row = 3+i
# add pump number
pumplab = QtGui.QLabel('Pump %i'%pump)
pumplab.setAlignment(QtCore.Qt.AlignHCenter)
grid.addWidget(pumplab,row,0)
# add syringe pulldown
combo = QtGui.QComboBox(self)
[combo.addItem(s) for s in sorted(syringes)]
self.mapper.setMapping(combo,pump)
combo.activated.connect(self.mapper.map)
grid.addWidget(combo,row,1)
# add textbox to put syring contents
grid.addWidget(QtGui.QLineEdit(),row,2)
# add textbox to enter flow rates
self.rates[pump] = QtGui.QLineEdit(self)
grid.addWidget(self.rates[pump],row,3)
self.volume[pump] = QtGui.QLineEdit(self)
grid.addWidget(self.volume[pump],row, 4)
# self.volume[pump]
# add label to show current flow rates
self.currflow[pump] = QtGui.QLabel(self)
self.currflow[pump].setAlignment(QtCore.Qt.AlignHCenter)
grid.addWidget(self.currflow[pump],row,6)
# add prime button
btn = QtGui.QPushButton('Prime',self)
btn.setCheckable(True)# makes the button toggleable
self.primemapper.setMapping(btn,pump)
btn.clicked.connect(self.primemapper.map)
grid.addWidget(btn,row,7)
self.prime_btns[pump] = btn
# mapper thing
self.mapper.mapped.connect(self.update_syringe)
self.primemapper.mapped.connect(self.prime_pumps)
# set up the status bar
self.curr_state = 'Running'
self.statusbar = QtGui.QLabel(self)
grid.addWidget(self.statusbar,1,6)
self.statusbar.setText('Status: '+self.curr_state)
# set up the last command bar
self.commandbar = QtGui.QLabel(self)
grid.addWidget(self.commandbar,row+1,0,1,4)
# make the prime state: a set containing the priming pumps
self.prime_state = set()
#initialize: set all flow rates to zero
self.run_update()
self.stop_all()
[self.update_syringe(p) for p in pumps]
self.commandbar.setText('')
# keyboard shortcuts
QtGui.QShortcut( QtGui.QKeySequence('Space'),self,self.stop_all)
# format the page
self.setLayout(grid)
self.setWindowTitle('Pump control')
#self.setWindowFlags(self.windowFlags() | QtCore.Qt.WindowStaysOnTopHint) # always on top
self.show()
def initUI(self):
self.ser = serial.Serial(serial_port, 19200, timeout=.1)
print 'connected to', self.ser.name
# set grid layout
grid = QtGui.QGridLayout()
grid.setSpacing(5)
# setup two buttons along top
self.runbtn = QtGui.QPushButton('Run/Update', self)
grid.addWidget(self.runbtn, 1, 2)
self.runbtn.setCheckable(True)
self.runbtn.clicked.connect(self.run_update)
self.stopbtn = QtGui.QPushButton('Stop', self)
grid.addWidget(self.stopbtn, 1, 3)
self.stopbtn.setCheckable(True)
self.stopbtn.clicked.connect(self.stop_all)
# setup timer stuff
self.timerbtn = QtGui.QPushButton('Run with Timer', self)
grid.addWidget(self.timerbtn, 2, 2, 1, 2)
self.timerbtn.setCheckable(True)
self.timerbtn.clicked.connect(self.run_update_timer)
label = QtGui.QLabel('Set timer (in minutes):')
label2 = QtGui.QLabel('Time remaining:')
label.setAlignment(QtCore.Qt.AlignRight | QtCore.Qt.AlignVCenter)
label2.setAlignment(QtCore.Qt.AlignRight | QtCore.Qt.AlignVCenter)
grid.addWidget(label, 3, 1)
grid.addWidget(label2, 3, 3)
self.timein = QtGui.QLineEdit(self)
grid.addWidget(self.timein, 3, 2)
# create and display the timer
self.label_time = QtGui.QLabel()
self.timer = QtCore.QTimer()
text = "--:--:--"
font = QtGui.QFont("SansSerif", 16, QtGui.QFont.Bold)
self.label_time.setFont(font)
self.label_time.setText(text)
grid.addWidget(self.label_time, 3, 4)
# optional column labels
grid.addWidget(QtGui.QLabel('Pump number'), 4, 0)
grid.addWidget(QtGui.QLabel('Syringe'), 4, 1)
grid.addWidget(QtGui.QLabel('Contents'), 4, 2)
grid.addWidget(QtGui.QLabel('Flow rate'), 4, 3)
grid.addWidget(QtGui.QLabel('Current flow rate'), 4, 4)
# find pumps
pumps = new_era.find_pumps(self.ser)
# interate over pumps, adding a row for each
self.mapper = QtCore.QSignalMapper(self)
self.primemapper = QtCore.QSignalMapper(self)
self.currflow = dict()
self.rates = dict()
self.prime_btns = dict()
for i, pump in enumerate(pumps):
row = 5 + i
# add pump number
pumplab = QtGui.QLabel('Pump %i' % pump)
pumplab.setAlignment(QtCore.Qt.AlignHCenter)
grid.addWidget(pumplab, row, 0)
# add syringe pulldown
combo = QtGui.QComboBox(self)
[combo.addItem(s) for s in sorted(syringes)]
self.mapper.setMapping(combo, pump)
combo.activated.connect(self.mapper.map)
grid.addWidget(combo, row, 1)
# add textbox to put syring contents
grid.addWidget(QtGui.QLineEdit(), row, 2)
# add textbox to enter flow rates
self.rates[pump] = QtGui.QLineEdit(self)
grid.addWidget(self.rates[pump], row, 3)
# add label to show current flow rates
self.currflow[pump] = QtGui.QLabel(self)
self.currflow[pump].setAlignment(QtCore.Qt.AlignHCenter)
grid.addWidget(self.currflow[pump], row, 4)
# add prime button
btn = QtGui.QPushButton('Prime', self)
btn.setCheckable(True) # makes the button toggleable
self.primemapper.setMapping(btn, pump)
btn.clicked.connect(self.primemapper.map)
grid.addWidget(btn, row, 5)
self.prime_btns[pump] = btn
# mapper thing
self.mapper.mapped.connect(self.update_syringe)
self.primemapper.mapped.connect(self.prime_pumps)
# set up the status bar
self.curr_state = 'Stopped'
self.statusbar = QtGui.QLabel(self)
grid.addWidget(self.statusbar, 1, 4)
self.statusbar.setText('Status: ' + self.curr_state)
# set up the last command bar
self.commandbar = QtGui.QLabel(self)
grid.addWidget(self.commandbar, row + 1, 0, 1, 4)
# make the prime state: a set containing the priming pumps
self.prime_state = set()
#initialize: set all flow rates to zero
self.run_update()
self.stop_all()
[self.update_syringe(p) for p in pumps]
self.commandbar.setText('')
# keyboard shortcuts
QtGui.QShortcut(QtGui.QKeySequence('Space'), self, self.stop_all)
# format the page
self.setLayout(grid)
self.setWindowTitle('Pump control')
#self.setWindowFlags(self.windowFlags() | QtCore.Qt.WindowStaysOnTopHint) # always on top
self.show()
def initUI(self):
self.ser = serial.Serial(serial_port, 19200, timeout=.1)
print('connected to', self.ser.name)
# set grid layout
grid = QtWidgets.QGridLayout()
grid.setSpacing(7)
# setup two buttons along top
self.runbtn = QtWidgets.QPushButton('Run/Update', self)
grid.addWidget(self.runbtn, 1, 2)
self.runbtn.setCheckable(True)
self.runbtn.clicked.connect(self.run_update)
self.stopbtn = QtWidgets.QPushButton('Stop', self)
grid.addWidget(self.stopbtn, 1, 3)
self.stopbtn.setCheckable(True)
self.stopbtn.clicked.connect(self.stop_all)
self.volbtn = QtWidgets.QPushButton('Deliver volume', self)
grid.addWidget(self.volbtn, 1, 4)
self.volbtn.setCheckable(True)
self.volbtn.clicked.connect(self.deliver_volume)
self.habitbtn = QtWidgets.QPushButton('Habituation', self)
grid.addWidget(self.habitbtn, 1, 5)
self.habitbtn.setCheckable(True)
self.habitbtn.clicked.connect(self.habituate)
# optional column labels
grid.addWidget(QtWidgets.QLabel('Pump number'), 2, 0)
grid.addWidget(QtWidgets.QLabel('Syringe'), 2, 1)
grid.addWidget(QtWidgets.QLabel('Contents'), 2, 2)
grid.addWidget(QtWidgets.QLabel('Flow rate'), 2, 3)
grid.addWidget(QtWidgets.QLabel('Volume to deliver'), 2, 4)
grid.addWidget(QtWidgets.QLabel('Habituation'), 2, 5)
grid.addWidget(QtWidgets.QLabel('Current flow rate'), 2, 6)
# find pumps
pumps = new_era.find_pumps(self.ser)
print("Find pumps:", pumps)
# interate over pumps, adding a row for each
self.mapper = QtCore.QSignalMapper(self)
self.primemapper = QtCore.QSignalMapper(self)
self.currflow = dict()
self.rates = dict()
self.prime_btns = dict()
self.volume = dict()
for i, pump in enumerate(pumps):
row = 3 + i
# add pump number
pumplab = QtWidgets.QLabel('Pump %i' % pump)
pumplab.setAlignment(QtCore.Qt.AlignHCenter)
grid.addWidget(pumplab, row, 0)
# add syringe pulldown
combo = QtWidgets.QComboBox(self)
[combo.addItem(s) for s in sorted(syringes)]
self.mapper.setMapping(combo, pump)
combo.activated.connect(self.mapper.map)
grid.addWidget(combo, row, 1)
# add textbox to put syring contents
grid.addWidget(QtWidgets.QLineEdit(), row, 2)
# add textbox to enter flow rates
self.rates[pump] = QtWidgets.QLineEdit(self)
grid.addWidget(self.rates[pump], row, 3)
self.volume[pump] = QtWidgets.QLineEdit(self)
grid.addWidget(self.volume[pump], row, 4)
# self.volume[pump]
# add label to show current flow rates
self.currflow[pump] = QtWidgets.QLabel(self)
self.currflow[pump].setAlignment(QtCore.Qt.AlignHCenter)
grid.addWidget(self.currflow[pump], row, 6)
# add prime button
btn = QtWidgets.QPushButton('Prime', self)
btn.setCheckable(True) # makes the button toggleable
self.primemapper.setMapping(btn, pump)
btn.clicked.connect(self.primemapper.map)
grid.addWidget(btn, row, 7)
self.prime_btns[pump] = btn
# mapper thing
self.mapper.mapped.connect(self.update_syringe)
self.primemapper.mapped.connect(self.prime_pumps)
# set up the status bar
self.curr_state = 'Running'
self.statusbar = QtWidgets.QLabel(self)
grid.addWidget(self.statusbar, 1, 6)
self.statusbar.setText('Status: ' + self.curr_state)
# set up the last command bar
self.commandbar = QtWidgets.QLabel(self)
grid.addWidget(self.commandbar, row + 1, 0, 1, 4)
# make the prime state: a set containing the priming pumps
self.prime_state = set()
#initialize: set all flow rates to zero
self.run_update()
self.stop_all()
[self.update_syringe(p) for p in pumps]
self.commandbar.setText('')
# keyboard shortcuts
QtWidgets.QShortcut(QtGui.QKeySequence('Space'), self, self.stop_all)
# format the page
self.setLayout(grid)
self.setWindowTitle('Pump control')
#self.setWindowFlags(self.windowFlags() | QtCore.Qt.WindowStaysOnTopHint) # always on top
self.show()