def add_grid_headers(self):
self.header_grid = QtWidgets.QGridLayout()
self.header_widget = NXWidget()
self.header_widget.set_layout(self.header_grid)
row = 0
columns = [
'Scan', 'data', 'link', 'copy', 'max', 'find', 'refine', 'prepare',
'transform', 'masked_transform', 'combine', 'masked_combine',
'pdf', 'masked_pdf', 'overwrite', 'sync'
]
header = {}
for col, column in enumerate(columns):
header[column] = NXLabel(column,
bold=True,
width=75,
align='center')
if column == 'transform' or column == 'combine' or column == 'pdf':
self.header_grid.addWidget(header[column], row, col, 1, 2,
QtCore.Qt.AlignHCenter)
elif 'masked' not in column:
self.header_grid.addWidget(header[column], row, col)
header[column].setAlignment(QtCore.Qt.AlignHCenter)
row = 1
columns = 3 * ['regular', 'masked']
for col, column in enumerate(columns):
header[column] = NXLabel(column, width=75, align='center')
self.header_grid.addWidget(header[column], row, col + 8)
self.header_grid.setSpacing(0)
self.header_widget.setFixedHeight(60)
self.insert_layout(2, self.header_widget)
def make_filterbox(self):
filterbox = QtWidgets.QWidget()
layout = QtWidgets.QGridLayout()
layout.setSpacing(10)
prefix_label = NXLabel('File Prefix')
self.prefix_box = NXLineEdit()
self.prefix_box.editingFinished.connect(self.set_range)
suffix_label = NXLabel('File Suffix')
self.suffix_box = NXLineEdit('')
self.suffix_box.editingFinished.connect(self.get_prefixes)
extension_label = NXLabel('File Extension')
self.extension_box = NXLineEdit()
self.extension_box.editingFinished.connect(self.set_extension)
layout.addWidget(prefix_label, 0, 0)
layout.addWidget(self.prefix_box, 0, 1)
layout.addWidget(suffix_label, 0, 2)
layout.addWidget(self.suffix_box, 0, 3)
layout.addWidget(extension_label, 0, 4)
layout.addWidget(self.extension_box, 0, 5)
self.prefix_combo = QtWidgets.QComboBox()
self.prefix_combo.setSizeAdjustPolicy(
QtWidgets.QComboBox.AdjustToContents)
self.prefix_combo.activated.connect(self.choose_prefix)
self.extension_combo = QtWidgets.QComboBox()
self.extension_combo.setSizeAdjustPolicy(
QtWidgets.QComboBox.AdjustToContents)
self.extension_combo.activated.connect(self.choose_extension)
layout.addWidget(self.prefix_combo, 1, 1,
alignment=QtCore.Qt.AlignHCenter)
layout.addWidget(self.extension_combo, 1, 5,
alignment=QtCore.Qt.AlignHCenter)
filterbox.setLayout(layout)
filterbox.setVisible(False)
return filterbox
def make_filterbox(self):
filterbox = QtWidgets.QWidget()
layout = QtWidgets.QGridLayout()
layout.setSpacing(10)
prefix_label = NXLabel('File Prefix')
self.prefix_box = NXLineEdit(slot=self.set_range)
suffix_label = NXLabel('File Suffix')
self.suffix_box = NXLineEdit(slot=self.get_prefixes)
extension_label = NXLabel('File Extension')
self.extension_box = NXLineEdit(slot=self.set_extension)
layout.addWidget(prefix_label, 0, 0)
layout.addWidget(self.prefix_box, 0, 1)
layout.addWidget(suffix_label, 0, 2)
layout.addWidget(self.suffix_box, 0, 3)
layout.addWidget(extension_label, 0, 4)
layout.addWidget(self.extension_box, 0, 5)
self.prefix_combo = NXComboBox(self.choose_prefix)
self.extension_combo = NXComboBox(self.choose_extension)
layout.addWidget(self.prefix_combo, 1, 1,
alignment=QtCore.Qt.AlignHCenter)
layout.addWidget(self.extension_combo, 1, 5,
alignment=QtCore.Qt.AlignHCenter)
filterbox.setLayout(layout)
filterbox.setVisible(False)
return filterbox
def scanbox(self):
"""Create widgets for specifying scan range to import."""
scanminlabel = NXLabel("Min. Scan")
self.scanmin = NXLineEdit(width=100, align='right')
scanmaxlabel = NXLabel("Max. Scan")
self.scanmax = NXLineEdit(width=100, align='right')
scanbox = QtWidgets.QHBoxLayout()
scanbox.addWidget(scanminlabel)
scanbox.addWidget(self.scanmin)
scanbox.addWidget(scanmaxlabel)
scanbox.addWidget(self.scanmax)
return scanbox
def make_rangebox(self):
rangebox = QtWidgets.QWidget()
layout = QtWidgets.QHBoxLayout()
rangeminlabel = NXLabel("Min. index")
self.rangemin = NXLineEdit(width=150, align='right')
rangemaxlabel = NXLabel("Max. index")
self.rangemax = NXLineEdit(width=150, align='right')
layout.addWidget(rangeminlabel)
layout.addWidget(self.rangemin)
layout.addStretch()
layout.addWidget(rangemaxlabel)
layout.addWidget(self.rangemax)
rangebox.setLayout(layout)
rangebox.setVisible(False)
return rangebox
def __init__(self, parent=None):
super(ImportDialog, self).__init__(parent)
self.file_type = None
layout = QtWidgets.QVBoxLayout()
layout.addLayout(self.filebox())
title_layout = QtWidgets.QHBoxLayout()
title_label = NXLabel('Title')
self.title_box = NXLineEdit()
title_layout.addWidget(title_label)
title_layout.addWidget(self.title_box)
layout.addLayout(title_layout)
energy_layout = QtWidgets.QHBoxLayout()
energy_label = NXLabel('Incident Energy')
self.energy_box = NXLineEdit()
self.energy_box.setFixedWidth(150)
energy_layout.addWidget(energy_label)
energy_layout.addWidget(self.energy_box)
energy_layout.addStretch()
layout.addLayout(energy_layout)
step_layout = QtWidgets.QHBoxLayout()
Q_label = NXLabel('dQ')
self.Q_box = NXLineEdit()
self.Q_box.setFixedWidth(75)
E_label = NXLabel('dE')
self.E_box = NXLineEdit()
self.E_box.setFixedWidth(75)
self.convert_box = QtWidgets.QCheckBox('Convert to S(Q,E)')
self.convert_box.setChecked(False)
step_layout.addWidget(self.convert_box)
step_layout.addStretch()
step_layout.addWidget(Q_label)
step_layout.addWidget(self.Q_box)
step_layout.addWidget(E_label)
step_layout.addWidget(self.E_box)
step_layout.addStretch()
layout.addLayout(step_layout)
layout.addWidget(self.close_buttons())
self.setLayout(layout)
self.setWindowTitle("Import "+str(filetype))
def scanbox(self):
'''create widgets for specifying scan range to import'''
scanminlabel = NXLabel("Min. Scan")
self.scanmin = NXLineEdit()
self.scanmin.setFixedWidth(100)
self.scanmin.setAlignment(QtCore.Qt.AlignRight)
scanmaxlabel = NXLabel("Max. Scan")
self.scanmax = NXLineEdit()
self.scanmax.setFixedWidth(100)
self.scanmax.setAlignment(QtCore.Qt.AlignRight)
scanbox = QtWidgets.QHBoxLayout()
scanbox.addWidget(scanminlabel)
scanbox.addWidget(self.scanmin)
scanbox.addWidget(scanmaxlabel)
scanbox.addWidget(self.scanmax)
return scanbox
def __init__(self, parent=None):
super().__init__(parent)
self.select_entry(self.choose_entry)
self.parameters = GridParameters()
self.parameters.add('first', '', 'First Frame')
self.parameters.add('last', '', 'Last Frame')
self.output = NXLabel('Maximum Value:')
self.set_layout(
self.entry_layout, self.output, self.parameters.grid(),
self.action_buttons(('Find Maximum', self.find_maximum)),
self.progress_layout(save=True))
self.progress_bar.setVisible(False)
self.progress_bar.setValue(0)
self.set_title('Find Maximum Value')
self.reduce = None
def make_rangebox(self):
rangebox = QtWidgets.QWidget()
layout = QtWidgets.QHBoxLayout()
rangeminlabel = NXLabel("Min. index")
self.rangemin = NXLineEdit()
self.rangemin.setFixedWidth(150)
self.rangemin.setAlignment(QtCore.Qt.AlignRight)
rangemaxlabel = NXLabel("Max. index")
self.rangemax = NXLineEdit()
self.rangemax.setFixedWidth(150)
self.rangemax.setAlignment(QtCore.Qt.AlignRight)
layout.addWidget(rangeminlabel)
layout.addWidget(self.rangemin)
layout.addStretch()
layout.addWidget(rangemaxlabel)
layout.addWidget(self.rangemax)
rangebox.setLayout(layout)
rangebox.setVisible(False)
return rangebox
def __init__(self, parent=None):
super().__init__(parent)
self.select_entry(self.choose_entry)
self.Qgrid = QtWidgets.QGridLayout()
self.Qgrid.setSpacing(10)
headers = ['Axis', 'Q', 'dQ', 'N', 'Max']
width = [25, 50, 50, 25, 50]
column = 0
for header in headers:
label = NXLabel(header, bold=True, align='center')
self.Qgrid.addWidget(label, 0, column)
self.Qgrid.setColumnMinimumWidth(column, width[column])
column += 1
self.Qbox = {}
self.dQbox = {}
self.Nbox = {}
self.maxbox = {}
for i, label in enumerate(['H', 'K', 'L']):
self.Qgrid.addWidget(NXLabel(label, align='center'), i + 1, 0)
self.Qbox[label] = NXLineEdit(slot=self.calculate,
width=100,
align='right')
self.Qgrid.addWidget(self.Qbox[label], i + 1, 1)
self.dQbox[label] = NXLineEdit(slot=self.calculate,
width=100,
align='right')
self.Qgrid.addWidget(self.dQbox[label], i + 1, 2)
self.Nbox[label] = NXLabel(align='center')
self.Qgrid.addWidget(self.Nbox[label], i + 1, 3)
self.maxbox[label] = NXLabel(align='center')
self.Qgrid.addWidget(self.maxbox[label], i + 1, 4)
self.set_layout(self.entry_layout, self.close_buttons(save=True))
self.setWindowTitle('Transforming Data')
try:
self.initialize_grid()
except Exception:
pass
def __init__(self, parent=None):
super().__init__(parent)
self.scans = None
self.prefix_box = NXLineEdit()
self.prefix_box.textChanged.connect(self.select_prefix)
prefix_layout = self.make_layout(NXLabel('Prefix'), self.prefix_box)
self.set_layout(
self.directorybox("Choose Sample Directory", self.choose_sample),
self.action_buttons(('Select All', self.select_scans),
('Clear All', self.clear_scans),
('Sum Scans', self.sum_scans)),
self.checkboxes(('update', 'Update Existing Sums', False),
('overwrite', 'Overwrite Existing Sums', False)),
prefix_layout, self.close_layout(close=True))
self.set_title('Sum Files')
def __init__(self, parent=None):
super(ImportDialog, self).__init__(parent)
skippedbox = QtWidgets.QHBoxLayout()
skippedlabel = NXLabel("No. of skipped rows")
self.skiprows = NXLineEdit()
self.skiprows.setText('0')
self.skiprows.setFixedWidth(20)
skippedbox.addWidget(skippedlabel)
skippedbox.addWidget(self.skiprows)
layout = QtWidgets.QVBoxLayout()
layout.addLayout(self.filebox())
layout.addLayout(skippedbox)
layout.addWidget(self.buttonbox())
self.setLayout(layout)
self.setWindowTitle("Import " + str(filetype))
def update(self):
if not self.sample_directory:
raise NeXusError("No sample directory declared")
if self.grid:
self.delete_grid(self.grid)
del self.grid_widget
if self.scroll_area:
self.scroll_area.close()
self.scroll_area.deleteLater()
# Map from wrapper files to scan directories
wrapper_files = {
w: self.get_scan(w)
for w in sorted([
os.path.join(self.sample_directory, filename)
for filename in os.listdir(self.sample_directory)
if self.is_valid(filename)
],
key=natural_sort)
}
self.grid = QtWidgets.QGridLayout()
self.grid_widget = NXWidget()
self.grid_widget.set_layout(self.grid, 'stretch')
self.scroll_area = NXScrollArea(self.grid_widget)
self.scroll_area.setMinimumSize(1250, 300)
self.insert_layout(3, self.scroll_area)
self.grid.setSpacing(1)
self.scans = {}
self.scans_backup = {}
row = 0
# Create (unchecked) checkboxes
for wrapper_file, scan in wrapper_files.items():
scan_label = os.path.basename(scan)
status = {}
status['scan'] = NXLabel(scan_label)
if self.parent_file == wrapper_file:
status['scan'].setStyleSheet('font-weight:bold')
status['entries'] = []
status['data'] = self.new_checkbox()
status['link'] = self.new_checkbox()
status['copy'] = self.new_checkbox()
status['max'] = self.new_checkbox()
status['find'] = self.new_checkbox()
status['refine'] = self.new_checkbox()
status['prepare'] = self.new_checkbox()
status['transform'] = self.new_checkbox()
status['masked_transform'] = self.new_checkbox()
status['combine'] = self.new_checkbox()
status['masked_combine'] = self.new_checkbox()
status['pdf'] = self.new_checkbox()
status['masked_pdf'] = self.new_checkbox()
status['overwrite'] = self.new_checkbox(self.select_scans)
status['sync'] = self.new_checkbox()
self.grid.addWidget(status['scan'], row, 0, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['data'], row, 1, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['link'], row, 2, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['copy'], row, 3, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['max'], row, 4, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['find'], row, 5, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['refine'], row, 6,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['prepare'], row, 7,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['transform'], row, 8,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_transform'], row, 9,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['combine'], row, 10,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_combine'], row, 11,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['pdf'], row, 12, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_pdf'], row, 13,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['overwrite'], row, 14,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['sync'], row, 15, QtCore.Qt.AlignCenter)
self.scans[scan] = status
row += 1
self.grid.addWidget(NXLabel('All'), row, 0, QtCore.Qt.AlignCenter)
all_boxes = {}
all_boxes['link'] = self.new_checkbox(
lambda: self.select_status('link'))
all_boxes['copy'] = self.new_checkbox(
lambda: self.select_status('copy'))
all_boxes['max'] = self.new_checkbox(lambda: self.select_status('max'))
all_boxes['find'] = self.new_checkbox(
lambda: self.select_status('find'))
all_boxes['refine'] = self.new_checkbox(
lambda: self.select_status('refine'))
all_boxes['prepare'] = self.new_checkbox(
lambda: self.select_status('prepare'))
all_boxes['transform'] = self.new_checkbox(
lambda: self.select_status('transform'))
all_boxes['masked_transform'] = self.new_checkbox(
lambda: self.select_status('masked_transform'))
all_boxes['combine'] = self.new_checkbox(
lambda: self.select_status('combine'))
all_boxes['masked_combine'] = self.new_checkbox(
lambda: self.select_status('masked_combine'))
all_boxes['pdf'] = self.new_checkbox(lambda: self.select_status('pdf'))
all_boxes['masked_pdf'] = self.new_checkbox(
lambda: self.select_status('masked_pdf'))
all_boxes['overwrite'] = self.new_checkbox(self.select_all)
all_boxes['sync'] = self.new_checkbox(self.select_all)
self.grid.addWidget(all_boxes['link'], row, 2, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['copy'], row, 3, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['max'], row, 4, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['find'], row, 5, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['refine'], row, 6, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['prepare'], row, 7,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['transform'], row, 8,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_transform'], row, 9,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['combine'], row, 10,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_combine'], row, 11,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['pdf'], row, 12, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_pdf'], row, 13,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['overwrite'], row, 14,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['sync'], row, 15, QtCore.Qt.AlignCenter)
self.all_scans = all_boxes
self.start_progress((0, len(wrapper_files)))
# Populate the checkboxes based on the entries in self.db.File
for i, (wrapper, scan) in enumerate(wrapper_files.items()):
status = self.scans[scan]
status['data'].setEnabled(False)
f = self.db.get_file(wrapper)
status['entries'] = f.get_entries()
for task_name in self.db.task_names:
# Database columns use nx* names while columns don't
if task_name.startswith('nx'):
col_name = task_name[2:]
else:
col_name = task_name
checkbox = status[col_name]
file_status = getattr(f, task_name)
if file_status == self.db.DONE:
checkbox.setCheckState(QtCore.Qt.Checked)
checkbox.setEnabled(False)
elif file_status == self.db.IN_PROGRESS:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
checkbox.setStyleSheet("color: green")
elif file_status == self.db.QUEUED:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
checkbox.setStyleSheet("color: blue")
elif file_status == self.db.FAILED:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
checkbox.setStyleSheet("color: red")
if status['data'].checkState() == QtCore.Qt.Unchecked:
for task in [
'link', 'max', 'find', 'prepare', 'transform',
'masked_transform'
]:
status[task].setEnabled(False)
self.update_progress(i)
self.stop_progress()
self.backup_scans()
return self.grid
def __init__(self, parent=None):
super().__init__(parent=parent)
self.textbox = QtWidgets.QTextEdit()
self.textbox.setMinimumWidth(400)
self.textbox.setMinimumHeight(200)
self.textbox.setReadOnly(True)
self.skipbox = NXLineEdit(0, width=20, align='center')
self.headbox = NXCheckBox()
self.delimiters = {
'Whitespace': None,
'Tab': '\t',
'Space': ' ',
'Comma': ',',
'Colon': ':',
'Semicolon': ';'
}
self.delcombo = NXComboBox(items=self.delimiters)
self.groupbox = NXLineEdit('data')
standard_groups = sorted(
list(set([g for g in self.mainwindow.nxclasses['NXentry'][2]])))
other_groups = sorted(
[g for g in self.mainwindow.nxclasses if g not in standard_groups])
self.groupcombo = NXComboBox(self.select_class, standard_groups)
self.groupcombo.insertSeparator(self.groupcombo.count())
self.groupcombo.add(*other_groups)
self.groupcombo.select('NXdata')
self.fieldcombo = NXComboBox(self.select_field)
self.fieldbox = NXLineEdit(slot=self.update_field)
self.typecombo = NXComboBox(self.update_field,
self.data_types,
default='float64')
self.signalcombo = NXComboBox(
self.update_field,
['field', 'signal', 'axis', 'errors', 'exclude'],
default='field')
self.field_layout = self.make_layout(
NXLabel('Output Fields', bold=True),
self.make_layout(self.fieldcombo, self.fieldbox, self.typecombo,
self.signalcombo),
spacing=5,
vertical=True)
self.customizebutton = NXPushButton('Customize Fields',
self.customize_data)
self.set_layout(self.filebox(slot=self.read_file),
self.textbox,
self.make_layout('Header Row', self.headbox, 'stretch',
'Skipped Rows', self.skipbox,
'stretch', 'Delimiters',
self.delcombo),
NXLabel('Output Group', bold=True),
self.make_layout('Class',
self.groupcombo,
'Name',
self.groupbox,
align='left'),
self.make_layout(self.customizebutton,
self.close_buttons(save=True),
align='justified'),
spacing=5)
self.set_title("Import " + str(filetype))
self.data = None
class MaximumDialog(NXDialog):
def __init__(self, parent=None):
super().__init__(parent)
self.select_entry(self.choose_entry)
self.parameters = GridParameters()
self.parameters.add('first', '', 'First Frame')
self.parameters.add('last', '', 'Last Frame')
self.output = NXLabel('Maximum Value:')
self.set_layout(
self.entry_layout, self.output, self.parameters.grid(),
self.action_buttons(('Find Maximum', self.find_maximum)),
self.progress_layout(save=True))
self.progress_bar.setVisible(False)
self.progress_bar.setValue(0)
self.set_title('Find Maximum Value')
self.reduce = None
def choose_entry(self):
self.reduce = NXReduce(self.entry)
self.maximum = self.reduce.maximum
if self.reduce.first:
self.parameters['first'].value = self.reduce.first
if self.reduce.last:
self.parameters['last'].value = self.reduce.last
@property
def first(self):
try:
_first = np.int32(self.parameters['first'].value)
if _first >= 0:
return _first
else:
return None
except Exception as error:
return None
@property
def last(self):
try:
_last = np.int32(self.parameters['last'].value)
if _last > 0:
return _last
else:
return None
except Exception as error:
return None
@property
def maximum(self):
return np.float(self.output.text().split()[-1])
@maximum.setter
def maximum(self, value):
self.output.setText(f'Maximum Value: {value}')
def find_maximum(self):
if is_file_locked(self.reduce.data_file):
return
self.start_thread()
self.reduce = NXReduce(self.entry,
first=self.first,
last=self.last,
maxcount=True,
overwrite=True,
gui=True)
self.reduce.moveToThread(self.thread)
self.reduce.start.connect(self.start_progress)
self.reduce.update.connect(self.update_progress)
self.reduce.result.connect(self.get_maximum)
self.reduce.stop.connect(self.stop)
self.thread.started.connect(self.reduce.nxmax)
self.thread.finished.connect(self.stop)
self.thread.start(QtCore.QThread.LowestPriority)
def get_maximum(self, maximum):
self.maximum = maximum
def stop(self):
self.stop_progress()
if self.thread and self.thread.isRunning():
self.reduce.stopped = True
self.stop_thread()
def accept(self):
try:
self.reduce.write_maximum(self.maximum)
self.reduce.record('nxmax',
maximum=self.maximum,
first_frame=self.first,
last_frame=self.last)
self.reduce.record_end('nxmax')
self.stop()
super().accept()
except Exception as error:
report_error("Finding Maximum", error)
def reject(self):
self.stop()
super().reject()
def list_peaks(self):
if self.peaks_box in self.mainwindow.dialogs:
self.update_table()
return
self.peaks_box = NXDialog(self)
self.peaks_box.setMinimumWidth(600)
self.peaks_box.setMinimumHeight(600)
header = [
'i', 'x', 'y', 'z', 'Polar', 'Azi', 'Intensity', 'H', 'K', 'L',
'Diff'
]
peak_list = self.refine.get_peaks()
self.refine.assign_rings()
self.rings = self.refine.make_rings()
self.ring_list = self.refine.get_ring_list()
if self.refine.primary is None:
self.refine.primary = 0
if self.refine.secondary is None:
self.refine.secondary = 1
self.primary_box = NXLineEdit(self.refine.primary,
width=80,
align='right')
self.secondary_box = NXLineEdit(self.refine.secondary,
width=80,
align='right')
orient_button = NXPushButton('Orient', self.choose_peaks)
orient_layout = self.make_layout(NXLabel('Primary'),
self.primary_box,
NXLabel('Secondary'),
self.secondary_box,
'stretch',
orient_button,
align='right')
self.table_view = QtWidgets.QTableView()
self.table_model = NXTableModel(self, peak_list, header)
self.table_view.setModel(self.table_model)
self.table_view.resizeColumnsToContents()
self.table_view.horizontalHeader().stretchLastSection()
self.table_view.setSelectionBehavior(
QtWidgets.QAbstractItemView.SelectRows)
self.table_view.doubleClicked.connect(self.plot_peak)
self.table_view.setSortingEnabled(True)
self.table_view.sortByColumn(0, QtCore.Qt.AscendingOrder)
self.status_text = NXLabel(f'Score: {self.refine.score():.4f}')
self.tolerance_box = NXLineEdit(self.refine.hkl_tolerance,
width=80,
slot=self.update_table,
align='right')
self.tolerance_box.setMaxLength(5)
export_button = NXPushButton('Export', self.export_peaks)
save_button = NXPushButton('Save', self.save_orientation)
close_button = NXPushButton('Close', self.close_peaks_box)
close_layout = self.make_layout(self.status_text, 'stretch',
NXLabel('Threshold'),
self.tolerance_box, 'stretch',
export_button, save_button,
close_button)
self.peaks_box.set_layout(orient_layout, self.table_view, close_layout)
self.peaks_box.set_title(f'{self.refine.name} Peak Table')
self.peaks_box.adjustSize()
self.peaks_box.show()
self.plotview = None