def read_tss_header(tssfilename):
""" Read header of a tss file (used in inflow)
:param tssfilename path and name of the tss
:returns outlets_id list of column names in tss file
"""
with open(tssfilename) as fp:
rec = fp.readline()
if rec.split()[0] == 'timeseries':
# LISFLOOD tss file with header
# get total number of outlets
outlets_tot_number = int(fp.readline())
fp.readline()
outlets_id = []
for i in range(0, outlets_tot_number - 1):
rec = fp.readline()
rec = int(rec.strip())
outlets_id.append(rec) #Lisflood ID code for output points
# read tss data
# tssdata = pd.read_table(tssfilename, delim_whitespace=True, header=None, names=outlets_id, index_col=0,
# skiprows=outlets_tot_number + 2)
else:
# LISFLOOD tss file without header (table)
numserie = len(rec.split())
outlets_id = []
for i in range(1, numserie):
outlets_id.append(
i) #Lisflood progressive ID code for output points
# read tss data
# tssdata = pd.read_table(tssfilename, delim_whitespace=True, header=None, names=outlets_id, index_col=0)
fp.close()
return outlets_id
def initial(self):
""" initial part of the evapo water module
"""
# ************************************************************
# ***** EVAPORATION
# ************************************************************
self.var.EvaCumM3 = MaskInfo.instance().in_zero()
# water use cumulated amount
# water use substep amount
settings = LisSettings.instance()
option = settings.options
binding = settings.binding
maskinfo = MaskInfo.instance()
if option['openwaterevapo']:
LakeMask = loadmap('LakeMask', pcr=True)
lmask = ifthenelse(LakeMask != 0, self.var.LddStructuresKinematic,
5)
LddEva = lddrepair(lmask)
lddC = compressArray(LddEva)
inAr = decompress(np.arange(maskinfo.info.mapC[0], dtype="int32"))
self.var.downEva = (compressArray(downstream(
LddEva, inAr))).astype("int32")
# each upstream pixel gets the id of the downstream pixel
self.var.downEva[lddC == 5] = maskinfo.info.mapC[0]
self.var.maxNoEva = int(loadmap('maxNoEva'))
# all pits gets a high number
# still to test if this works
# ldd only inside lakes for calculating evaporation
if option['varfractionwater']:
self.var.diffmaxwater = loadmap(
'FracMaxWater') - self.var.WaterFraction
# Fraction of maximum extend of water - fraction of water in lakes and rivers
varWNo = [
1, 32, 60, 91, 121, 152, 182, 213, 244, 274, 305, 335, 370
]
self.var.varW = [] # variable fraction of water
self.var.varW1 = []
self.var.varW1.append(12)
j = 0
for i in range(1, 367):
if i >= varWNo[j + 1]: j += 1
self.var.varW1.append(j)
for i in range(12):
varWName = generateName(binding['WFractionMaps'],
varWNo[i])
self.var.varW.append(
loadLAI(binding['WFractionMaps'], varWName, i))
def _writeTssFile(self):
"""
writing timeseries to disk
"""
#
option = LisSettings.instance().options
outputFilename = self._configureOutputFilename(self._outputFilename)
if option['EnKF']:
if not os.path.exists(outputFilename):
if self._writeHeader:
self._writeFileHeader(outputFilename)
outputFile = open(outputFilename, "a")
else:
outputFile = open(outputFilename, "w")
else:
outputFile = open(outputFilename, "a")
else:
if self._writeHeader:
self._writeFileHeader(outputFilename)
outputFile = open(outputFilename, "a")
else:
outputFile = open(outputFilename, "w")
assert outputFile
start = self._userModel.firstTimeStep()
end = self._userModel.nrTimeSteps() + 1
for timestep in range(start, end):
row = ""
row += " %8g" % timestep
if self._spatialIdGiven:
for cellId in range(0, self._ncodesId):
value = self._sampleValues[timestep - start][cellId]
if isinstance(value, Decimal):
row += " 1e31"
else:
row += " %14g" % (value)
row += "\n"
else:
value = self._sampleValues[timestep - start]
if isinstance(value, Decimal):
row += " 1e31"
else:
row += " %14g" % (value)
row += "\n"
outputFile.write(row)
outputFile.close()
def test_percentage():
from time import sleep
total = 100
d = PercentageDone(total)
for i in range(total):
d(i)
sleep(.5)
def test_percentage():
from time import sleep
total = 100
d = PercentageDone(total)
for i in range(total):
d(i)
sleep(.5)
def readmapsparse(name, time, oldmap):
"""
load stack of maps 1 at each timestamp in Pcraster format
"""
filename = generateName(name, time)
flags = LisSettings.instance().flags
try:
map = iterReadPCRasterMap(filename)
find = 1
except:
find = 2
if oldmap is None:
for i in range(time - 1, 0, -1):
altfilename = generateName(name, i)
if os.path.exists(altfilename):
map = iterReadPCRasterMap(altfilename)
find = 1
# break
if find == 2:
msg = "no map in stack has a smaller time stamp than: " + filename
raise LisfloodError(msg)
else:
map = oldmap
if flags['loud']:
s = " last_%s" % (os.path.basename(name))
print(s)
if flags['checkfiles']:
checkmap(os.path.basename(name), filename, map, True, find)
if flags['nancheck']:
nanCheckMap(map, filename, name)
mapC = compressArray(map, name=filename)
return mapC
def readnetcdfsparse(name, time, oldmap):
"""
NO LONGER USED
load stack of maps 1 at each timestamp in Netcdf format
"""
try:
mapC = readnetcdf(name, time)
find = 1
# print name+str(time)+" "+str(find)
except:
find = 2
if oldmap is None:
for i in range(time - 1, 0, -1):
try:
mapC = readnetcdf(name, i)
find = 1
break
except:
pass
# print name+" "+str(time)+" "+str(find)+" "+str(i)
if find == 2:
msg = "no map in stack has a smaller time stamp than: " + str(
time)
raise LisfloodError(msg)
else:
settings = LisSettings.instance()
flags = settings.flags
mapC = oldmap
if flags['loud']:
s = " last_" + (os.path.basename(name)) + str(time)
# print s,
return mapC
def valuecell(mask, coordx, coordstr):
"""
to put a value into a pcraster map -> invert of cellvalue
pcraster map is converted into a numpy array first
"""
coord = []
for xy in coordx:
try:
coord.append(float(xy))
except:
msg = "Gauges: " + xy + " in " + coordstr + " is not a coordinate"
raise LisfloodError(msg)
null = np.zeros((pcraster.clone().nrRows(), pcraster.clone().nrCols()))
null[null == 0] = -9999
for i in range(int(len(coord) / 2)):
col = int((coord[i * 2] - pcraster.clone().west()) /
pcraster.clone().cellSize())
row = int((pcraster.clone().north() - coord[i * 2 + 1]) /
pcraster.clone().cellSize())
#if col >= 0 and row >= 0 and col < pcraster.clone().nrCols() and row < pcraster.clone().nrRows():
if col >= 0 and row >= 0 and col < pcraster.clone().nrCols(
) and row < pcraster.clone().nrRows():
null[row, col] = i + 1
else:
msg = "Coordinates: " + str(coord[i * 2]) + ',' + str(coord[
i * 2 +
1]) + " to put value in is outside mask map - col,row: " + str(
col) + ',' + str(row)
raise LisfloodError(msg)
map = numpy2pcr(Nominal, null, -9999)
return map
def valuecell(coordx, coordstr):
"""
to put a value into a pcraster map -> invert of cellvalue
pcraster map is converted into a numpy array first
"""
coord = []
for xy in coordx:
try:
coord.append(float(xy))
except ValueError:
msg = 'Gauges: {} in {} is not a coordinate'.format(xy, coordstr)
raise LisfloodError(msg)
null = np.zeros((pcraster.clone().nrRows(), pcraster.clone().nrCols()))
null[null == 0] = -9999
for i in range(int(len(coord) / 2)):
col = int((coord[i * 2] - pcraster.clone().west()) / pcraster.clone().cellSize())
row = int((pcraster.clone().north() - coord[i * 2 + 1]) / pcraster.clone().cellSize())
if 0 <= col < pcraster.clone().nrCols() and 0 <= row < pcraster.clone().nrRows():
null[row, col] = i + 1
else:
msg = 'Coordinates: {}, {} to put value in is outside mask map - col,row: {}, {}'.format(coord[i * 2], coord[i * 2 + 1], col, row)
raise LisfloodError(msg)
return numpy_operations.numpy2pcr(Nominal, null, -9999)
def perturbState(var,
method="normal",
minVal=0,
maxVal=1,
mu=0,
sigma=1,
spatial=True,
single=True):
try:
numVals = len(var)
except:
numVals = 1
if method == "normal":
if spatial:
domain = len(var[0])
out = var
for i in range(numVals):
out[i] = np.minimum(
np.maximum(np.random.normal(mu, sigma, domain), minVal),
maxVal)
else:
if single:
out = np.minimum(
np.maximum(np.random.normal(mu, sigma, numVals), minVal),
maxVal)
else:
out = list(
np.minimum(
np.maximum(np.random.normal(mu, sigma, numVals),
minVal), maxVal))
if method == "uniform":
if spatial:
domain = len(var[0])
out = var
for i in range(numVals):
out[i] = np.random.uniform(minVal, maxVal, domain)
else:
if single:
out = np.random.uniform(minVal, maxVal, numVals)
else:
out = list(np.random.uniform(minVal, maxVal, numVals))
return (out)
def listest(cls, variable):
settings = LisSettings.instance()
output_path = settings.binding['PathOut']
output_nc = os.path.join(output_path, variable)
print('\n\n>>> Reference: {} - Current Output: {}'.format(
cls.reference_files[cls.domain][variable], output_nc))
results = []
numsteps = cls.netcdf_steps(cls.reference_files[cls.domain][variable])
for step in range(0, numsteps):
results.append(cls.check_var_step(variable, step))
assert all(results)
def initial(self):
""" initial part of the leaf area index module
"""
self.var.kgb = 0.75 * loadmap('kdf')
# extinction coefficient for global solar radiation [-]
# kdf= extinction coefficient for diffuse visible light [-], varies between
# 0.4 and 1.1
# LAINr=[1,32,60,91,121,152,182,213,244,274,305,335,370]
LAINr = [
1, 11, 21, 32, 42, 52, 60, 70, 80, 91, 101, 111, 121, 131, 141,
152, 162, 172, 182, 192, 202, 213, 223, 233, 244, 254, 264, 274,
284, 294, 305, 315, 325, 335, 345, 355, 370
]
self.var.LAIX = [[0 for x in range(36)] for x in range(3)]
self.var.LAI = [0, 0]
self.var.L1 = []
# self.var.L1.append(36)
j = 0
for i in range(367):
if i >= LAINr[j + 1]:
j += 1
self.var.L1.append(j)
# print i,self.L1[i],LAINr1[self.L1[i]]
settings = LisSettings.instance()
binding = settings.binding
for i in range(36):
LAIName = generateName(binding['LAIOtherMaps'], LAINr[i])
self.var.LAIX[0][i] = loadLAI(binding['LAIOtherMaps'], LAIName, i)
LAIName = generateName(binding['LAIForestMaps'], LAINr[i])
self.var.LAIX[1][i] = loadLAI(binding['LAIForestMaps'], LAIName, i)
LAIName = generateName(binding['LAIIrrigationMaps'], LAINr[i])
self.var.LAIX[2][i] = loadLAI(binding['LAIIrrigationMaps'],
LAIName, i)
def listest(cls, variable):
settings = LisSettings.instance()
binding = settings.binding
model_steps = settings.model_steps
reference_path = cls.reference_files[variable]['outpath']
output_path = os.path.normpath(binding[cls.reference_files[variable]['report_map']])
print('>>> Reference: {} - Current Output: {}'.format(reference_path, output_path))
results = []
start_step, end_step = model_steps[0], model_steps[1]
for step in range(start_step, end_step + 1):
results.append(cls.check_var_step(variable, step))
assert all(results)
def _report_steps(user_settings, bindings):
res = {}
repsteps = user_settings['ReportSteps'].split(',')
if repsteps[-1] == 'endtime':
repsteps[-1] = bindings['StepEnd']
jjj = []
for i in repsteps:
if '..' in i:
j = list(map(int, i.split('..')))
jjj = list(range(j[0], j[1] + 1))
else:
jjj.append(i)
res['rep'] = list(map(int, jjj))
return res
def _writeFileHeader(self, outputFilename):
"""
writes header part of tss file
"""
outputFile = open(outputFilename, "w")
# header
from .settings import LisSettings
settings = LisSettings.instance()
outputFile.write("timeseries {} settingsfile: {} date: {}\n".format(
self._spatialDatatype.lower(), settings.settings_path,
xtime.ctime(xtime.time())))
# write number of outlets points +1
outputFile.write(str(self._ncodesId + 1) + "\n")
outputFile.write("timestep\n")
for colId in range(0, self._ncodesId):
outputFile.write(str(self._codesId[colId]) + "\n")
outputFile.close()
def _writeFileHeader(self, outputFilename):
"""
writes header part of tss file
"""
outputFile = open(outputFilename, "w")
# header
#outputFile.write("timeseries " + self._spatialDatatype.lower() + "\n")
outputFile.write("timeseries " + self._spatialDatatype.lower() +
" settingsfile: " + os.path.realpath(sys.argv[1]) +
" date: " + xtime.ctime(xtime.time()) + "\n")
sys.argv[1]
# write number of outlets points +1
outputFile.write(str(self._ncodesId + 1) + "\n")
outputFile.write("timestep\n")
for colId in range(0, self._ncodesId):
outputFile.write(str(self._codesId[colId]) + "\n")
outputFile.close()
def _report_steps(user_settings, bindings):
res = {}
repsteps = user_settings['ReportSteps'].split(',')
if repsteps[0] == 'starttime':
repsteps[0] = bindings['StepStartInt']
if repsteps[-1] == 'endtime':
repsteps[-1] = bindings['StepEndInt']
jjj = []
for i in repsteps:
if '..' in i:
j = list(map(int, i.split('..')))
jjj = list(range(j[0], j[1] + 1))
else:
jjj.append(i)
res['rep'] = list(map(int, jjj))
if res['rep'][0] > bindings['StepEndInt'] or res['rep'][-1] < bindings[
'StepStartInt']:
warnings.warn(
LisfloodWarning(
'No maps are reported as report steps configuration is outside simulation time interval'
))
return res
def dynamic(self):
""" dynamic part of the evaporation from open water
"""
settings = LisSettings.instance()
option = settings.options
if option['openwaterevapo']:
# ***********************************************
# ********* EVAPORATION FROM OPEN WATER *******
# ***********************************************
UpstreamEva = self.var.EWRef * self.var.MMtoM3 * self.var.WaterFraction
# evaporation for loop is amount of water per timestep [cu m]
# Volume of potential evaporation from water surface per time step (conversion to [m3])
ChanMIter = self.var.ChanM3Kin.copy()
# for Iteration loop: First value is amount of water in the channel
# amount of water in bankful (first line of routing)
ChanLeft = ChanMIter * 0.1
# 10% of the discharge must stay in the river
self.var.EvaAddM3 = MaskInfo.instance().in_zero()
# real water consumption is set to 0
for NoEvaExe in range(self.var.maxNoEva):
ChanHelp = np.maximum(ChanMIter - UpstreamEva, ChanLeft)
EvaIter = np.maximum(UpstreamEva - (ChanMIter - ChanHelp), 0)
# new amount is amout - evaporation use till a limit
# new evaporation is evaporation - water is used from channel network
ChanMIter = ChanHelp.copy()
self.var.EvaAddM3 += UpstreamEva - EvaIter
# evaporation is added up; the sum is the same as sum of original water use
# UpstreamEva = upstream(self.var.LddEva,EvaIter)
UpstreamEva = np.bincount(self.var.downEva,
weights=EvaIter)[:-1]
# remaining water use is moved down the the river system,
self.var.EvaAddM3Dt = self.var.EvaAddM3 * self.var.InvNoRoutSteps
# splitting water use per timestep into water use per sub time step
self.var.EvaCumM3 += self.var.EvaAddM3
def __init__(self, tssFilename, model, idMap=None, noHeader=False):
"""
"""
if not isinstance(tssFilename, str):
raise ValueError(
"timeseries output filename must be of type string. Found {} of type {}"
.format(tssFilename, type(tssFilename)))
settings = LisSettings.instance()
binding = settings.binding
self._outputFilename = tssFilename
self._maxId = 1
self._ncodesId = 1
self._spatialId = None
self._spatialDatatype = None
self._spatialIdGiven = False
self._userModel = model
self._writeHeader = not noHeader
# array to store the timestep values
self._sampleValues = None
_idMap = False
if isinstance(idMap, str) or isinstance(idMap,
pcraster._pcraster.Field):
_idMap = True
# if header reserve rows from 1 to endstep
# if noheader only from startstep - endstep
if noHeader:
nrRows = datetoint(binding['StepEnd'])[0] - datetoint(
binding['StepStart'])[0] - self._userModel.firstTimeStep() + 2
else:
nrRows = datetoint(binding['StepEnd'])[0] - datetoint(
binding['StepStart'])[0] - self._userModel.firstTimeStep() + 2
if _idMap:
self._spatialId = idMap
if isinstance(idMap, str):
self._spatialId = iterReadPCRasterMap(idMap)
_allowdDataTypes = [
pcraster.Nominal, pcraster.Ordinal, pcraster.Boolean
]
if self._spatialId.dataType() not in _allowdDataTypes:
#raise Exception(
# "idMap must be of type Nominal, Ordinal or Boolean")
# changed into creating a nominal map instead of bailing out
self._spatialId = pcraster.nominal(self._spatialId)
if self._spatialId.isSpatial():
self._maxId, valid = pcraster.cellvalue(
pcraster.mapmaximum(pcraster.ordinal(self._spatialId)), 1)
# convert to numpy array
outletsmapnp = pcr2numpy(self._spatialId, np.nan)
# get outlets codes from outlets map
codesId = numpy.unique(outletsmapnp)
# drop negative values (= missing data in pcraster map)
codesId = codesId[codesId > 0]
# get number of outlets points
self._ncodesId = len(codesId)
# prepare array to store outlets codes
self._codesId = [-9999 for i in range(self._ncodesId)]
else:
self._maxId = 1
self._codesId = [1]
self._ncodesId = len(self._codesId)
# cell indices of the sample locations
# #self._sampleAddresses = []
# for cellId in range(1, self._maxId + 1):
# self._sampleAddresses.append(self._getIndex(cellId))
# prepare array to store outlets points raster numbers
self._sampleAddresses = [-9999 for i in range(self._ncodesId)]
# init with the left/top cell - could also be 0 but then you have to catch it in
# the sample routine and put an exeption in
# number of cells in map
nrCells = pcraster.clone().nrRows() * pcraster.clone().nrCols()
for cell in range(1, nrCells + 1):
if (pcraster.cellvalue(self._spatialId, cell)[1]):
# get point code from outlets map for pixel cell
outlet_code = pcraster.cellvalue(self._spatialId, cell)[0]
# get index of the point code in the sorted list of outlets codes
outlet_idx = np.where(codesId == outlet_code)[0][0]
# store point code
self._codesId[outlet_idx] = outlet_code
# store outlets location (cell)
self._sampleAddresses[outlet_idx] = cell
self._spatialIdGiven = True
nrCols = self._ncodesId
self._sampleValues = [[Decimal("NaN")] * nrCols
for _ in [0] * nrRows]
else:
self._sampleValues = [[Decimal("NaN")] * 1 for _ in [0] * nrRows]
def random_string(length, chars='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
'abcdefghijklmnopqrstuvwxyz'
'0123456789'):
"""Return a random string of some `length`."""
return ''.join((random.choice(chars) for i in range(length)))
def __init__(self, tssFilename, model, idMap=None, noHeader=False):
"""
"""
if not isinstance(tssFilename, str):
raise Exception(
"timeseries output filename must be of type string")
self._outputFilename = tssFilename
self._maxId = 1
self._spatialId = None
self._spatialDatatype = None
self._spatialIdGiven = False
self._userModel = model
self._writeHeader = not noHeader
# array to store the timestep values
self._sampleValues = None
_idMap = False
if isinstance(idMap, (str, pcraster.pcraster.Field)):
_idMap = True
nrRows = self._userModel.nrTimeSteps() - self._userModel.firstTimeStep() + 1
if _idMap:
self._spatialId = idMap
if isinstance(idMap, str):
self._spatialId = pcraster.readmap(idMap)
_allowdDataTypes = [pcraster.Nominal, pcraster.pcraster.Ordinal, pcraster.Boolean]
if self._spatialId.dataType() not in _allowdDataTypes:
# raise Exception(
# "idMap must be of type Nominal, Ordinal or Boolean")
# changed into creating a nominal map instead of bailing out
self._spatialId = nominal(self._spatialId)
if self._spatialId.isSpatial():
self._maxId, valid = pcraster.pcraster.cellvalue(pcraster.operations.mapmaximum(pcraster.operations.ordinal(self._spatialId)), 1)
else:
self._maxId = 1
# cell indices of the sample locations
# #self._sampleAddresses = []
# for cellId in range(1, self._maxId + 1):
# self._sampleAddresses.append(self._getIndex(cellId))
self._sampleAddresses = [1 for _ in range(self._maxId)]
# init with the left/top cell - could also be 0 but then you have to catch it in
# the sample routine and put an exeption in
nrCells = pcraster.pcraster.clone().nrRows() * pcraster.pcraster.clone().nrCols()
for cell in range(1, nrCells + 1):
if pcraster.pcraster.cellvalue(self._spatialId, cell)[1]:
self._sampleAddresses[pcraster.pcraster.cellvalue(self._spatialId, cell)[0] - 1] = cell
self._spatialIdGiven = True
nrCols = self._maxId
self._sampleValues = [[Decimal("NaN")] * nrCols for _ in [0] * nrRows]
else:
self._sampleValues = [[Decimal("NaN")] * 1 for _ in [0] * nrRows]
def dynamic(self, sLoop):
""" dynamic part of the soil loop module
"""
# to make things faster: global functions to local functions
# ************************************************************
# ***** INTERCEPTION *****************************************
# ************************************************************
# Domain: whole pixel (permeable + direct runoff areas)
#
maskinfo = MaskInfo.instance()
np.seterr(invalid='ignore', divide='ignore')
SMax = np.where(
self.var.LAI[sLoop] > 0.1, 0.935 + 0.498 * self.var.LAI[sLoop] -
0.00575 * np.square(self.var.LAI[sLoop]), maskinfo.in_zero())
SMax = np.where(self.var.LAI[sLoop] > 43.3, 11.718, SMax)
# maximum interception [mm]
# Van Hoyningen-Huene (1981), p.46
# small LAI: no interception
# Note that for LAI = 43.3, SMax is at its maximum value of 11.718, and dropping
# after that(but LAI should never be that high))
self.var.Interception[sLoop] = np.where(
SMax > 0.0,
np.minimum(
SMax - self.var.CumInterception[sLoop],
SMax *
(1 -
np.exp(-0.046 * self.var.LAI[sLoop] * self.var.Rain / SMax))),
maskinfo.in_zero())
self.var.Interception[sLoop] = np.minimum(self.var.Interception[sLoop],
self.var.Rain)
# Interception (in [mm] per timestep)
# Smax is calculated from LAI as a constant map (above)
# according to Aston (1970), based on Merriam (1960/1970)
# 0.046*LAI = k = (1-p) p = 1-0.046*LAI Aston (1970)
# LAI must be a pixel average, not the average LAI for PER only!
self.var.CumInterception[sLoop] += self.var.Interception[sLoop]
# total interception in [mm] per timestep
# ************************************************************
# ***** EVAPORATION OF INTERCEPTED WATER *********************
# ************************************************************
# Domain: whole pixel (permeable + direct runoff areas)
TaInterceptionMax = self.var.EWRef * (1 - self.var.LAITerm[sLoop])
# Maximum evaporation rate of intercepted water, [mm] per timestep
# TaInterception at rate of open water surface only evaporation
# of intercepted water in vegetated fraction,hence mutiplication
# by(1-LAITerm)
self.var.TaInterception[sLoop] = np.maximum(
np.minimum(self.var.CumInterception[sLoop], TaInterceptionMax),
maskinfo.in_zero())
# amount of interception water [mm] that can be evaporated
# assumption: at first all interception water is evaporated rate is equal to TaInterceptionMax
self.var.CumInterception[sLoop] = np.maximum(
self.var.CumInterception[sLoop] - self.var.TaInterception[sLoop],
maskinfo.in_zero())
# evaporated water is subtracted from Cumulative Interception
self.var.LeafDrainage[
sLoop] = self.var.LeafDrainageK * self.var.CumInterception[sLoop]
# leaf drainage in [mm] per timestep, assuming linear reservoir
# assumption: after 1 day all intercepted water is evaporated or has fallen
# on the soil surface
self.var.CumInterception[sLoop] = np.maximum(
self.var.CumInterception[sLoop] - self.var.LeafDrainage[sLoop],
maskinfo.in_zero())
# ************************************************************
# ***** AVAILABLE WATER FOR INFILTRATION ****************************
# ************************************************************
# Domain: AvailableWaterForInfiltration only used for permeable fraction
# DirectRunoff is total for whole pixel (permeable + direct runoff areas)
self.var.AvailableWaterForInfiltration[sLoop] =\
np.maximum(self.var.Rain + self.var.SnowMelt + self.var.LeafDrainage[sLoop] - self.var.Interception[sLoop], maskinfo.in_zero())
# Water available for infiltration during this timestep [mm]
# ************************************************************
# ***** SOIL WATER STRESS ************************************
# ************************************************************
# Domain: permeable fraction of pixel only
p = 1 / (0.76 + 1.5 *
np.minimum(0.1 * self.var.ETRef * self.var.InvDtDay, 1.0)
) - 0.10 * (5 - self.var.CropGroupNumber[sLoop])
# soil water depletion fraction (easily available soil water)
# Van Diepen et al., 1988: WOFOST 6.0, p.87
# to avoid a strange behaviour of the p-formula's, ETRef is set to a maximum of
# 10 mm/day. Thus, p will range from 0.15 to 0.45 at ETRef eq 10 and
# CropGroupNumber 1-5
p = np.where(
self.var.CropGroupNumber[sLoop] <= 2.5, p +
(np.minimum(0.1 * self.var.ETRef * self.var.InvDtDay, 1.0) - 0.6) /
(self.var.CropGroupNumber[sLoop] *
(self.var.CropGroupNumber[sLoop] + 3)), p)
# correction for crop groups 1 and 2 (Van Diepen et al, 1988)
p = np.maximum(np.minimum(p, 1.0), maskinfo.in_zero())
# p is between 0 and 1
WCrit1 = ((1 - p) * (self.var.WFC1[sLoop] - self.var.WWP1[sLoop])
) + self.var.WWP1[sLoop]
WCrit1a = ((1 - p) * (self.var.WFC1a[sLoop] - self.var.WWP1a[sLoop])
) + self.var.WWP1a[sLoop]
WCrit1b = ((1 - p) * (self.var.WFC1b[sLoop] - self.var.WWP1b[sLoop])
) + self.var.WWP1b[sLoop]
# critical moisture amount ([mm] water slice) for all layers
settings = LisSettings.instance()
option = settings.options
if option['wateruse'] and sLoop == 2:
self.var.WFilla = np.minimum(WCrit1a, self.var.WPF3a[2])
self.var.WFillb = np.minimum(WCrit1b, self.var.WPF3b[2])
# if water use is calculated, get the filling of the soil layer for either pF3 or WCrit1
# that is the amount of water the soil gets filled by water from irrigation
# with np.errstate(invalid='ignore',divide='ignore'):
# bc the divisor can have 0 -> this calculation is done first and raise a warning - zero encountered -
# even if it is catched afterwards
self.var.RWS[sLoop] = np.where(
(WCrit1 - self.var.WWP1[sLoop]) > 0,
(self.var.W1[sLoop] - self.var.WWP1[sLoop]) /
(WCrit1 - self.var.WWP1[sLoop]), 1.0)
# Transpiration reduction factor (in case of water stress)
# if WCrit1 = WWP1, RWS is zero there is no water stress in that case
self.var.RWS[sLoop] = np.maximum(np.minimum(self.var.RWS[sLoop], 1.0),
maskinfo.in_zero())
# Transpiration reduction factor (in case of water stress)
if option['repStressDays']:
self.var.SoilMoistureStressDays[sLoop] = np.where(
self.var.RWS[sLoop] < 1, self.var.DtDay, maskinfo.in_zero())
# Count number of days with soil water stress, RWS is between 0 and 1
# no reduction of Transpiration at RWS=1, at RWS=0 there is no Transpiration at all
# ************************************************************
# ***** MAXIMUM TRANSPIRATION RATE ***************************
# ************************************************************
# Domain: permeable fraction of pixel only
TranspirMax = self.var.CropCoef[sLoop] * self.var.ETRef * (
1 - self.var.LAITerm[sLoop])
# maximum transpiration rate ([mm] per timestep)
# crop coefficient is mostly 1, except for excessively transpirating crops,
# such as sugarcane and some forests (coniferous forests)
self.var.TranspirMaxCorrected = np.maximum(
TranspirMax - self.var.TaInterception[sLoop], maskinfo.in_zero())
# subtract TaInterception from TranspirMax to ensure energy balance is respected
# (maximize statement because TranspirMax and TaInterception are calculated from
# reference surfaces with slightly diferent properties)
# ************************************************************
# ***** ACTUAL TRANSPIRATION RATE ****************************
# ************************************************************
# Domain: permeable fraction of pixel only
self.var.Ta[sLoop] = np.maximum(
np.minimum(self.var.RWS[sLoop] * self.var.TranspirMaxCorrected,
self.var.W1[sLoop] - self.var.WWP1[sLoop]), 0.0)
# actual transpiration based on both layers 1a and 1b
self.var.Ta[sLoop] = np.where(
self.var.FrostIndex > self.var.FrostIndexThreshold,
maskinfo.in_zero(), self.var.Ta[sLoop])
# transpiration is 0 when soil is frozen
# calculate distribution where to take Ta from:
# 1st: above wCrit from layer 1a
# 2nd: above Wcrit from layer 1b
# 3rd: distribute take off according to soil moisture availability below wcrit
wc1a = np.maximum(
self.var.W1a[sLoop] - WCrit1a, 0
) # unstressed water availability from layer 1a without stress (above critical soil moisture)
wc1b = np.maximum(self.var.W1b[sLoop] - WCrit1b,
0) # (same as above but for layer 1b)
Ta1a = np.minimum(
self.var.Ta[sLoop], wc1a
) # temporary transpiration from layer 1a (<= unstressed layer 1a availability)
restTa = np.maximum(
self.var.Ta[sLoop] - Ta1a, 0
) # transpiration left after layer 1a unstressed water has been abstracted
Ta1b = np.minimum(
restTa, wc1b
) # temporary transpiration from layer 1b (<= unstressed layer 1b availability)
restTa = np.maximum(
restTa - Ta1b, 0
) # transpiration left after layers 1a and 1b unstressed water have been abstracted
stressed_availability_1a = np.maximum(self.var.W1a[sLoop] - Ta1a -
self.var.WWP1a[sLoop], 0) #|
stressed_availability_1b = np.maximum(self.var.W1b[sLoop] - Ta1b -
self.var.WWP1b[sLoop], 0) #|
stressed_availability_tot = stressed_availability_1a + stressed_availability_1b #|> distribution of abstractions of
available = stressed_availability_tot > 0 #|> soil moisture below the critical value
fraction_rest_1a = np.where(
available, stressed_availability_1a / stressed_availability_tot,
0) #|> proportionally to each root-zone layer (1a and 1b)
fraction_rest_1b = np.where(available, stressed_availability_1b /
stressed_availability_tot,
0) #|> "stressed" availability
Ta1a += fraction_rest_1a * restTa #|
Ta1b += fraction_rest_1b * restTa #|
self.var.W1a[sLoop] -= Ta1a
self.var.W1b[sLoop] -= Ta1b
self.var.W1[sLoop] = np.add(self.var.W1a[sLoop], self.var.W1b[sLoop])
# ************************************************************
# ***** ACTUAL BARE SOIL EVAPORATION *************************
# ************************************************************
# Domain: permeable fraction of pixel only
# ESActPixel valid for whole pixel
self.var.DSLR[sLoop] = np.where(
self.var.AvailableWaterForInfiltration[sLoop] >
self.var.AvWaterThreshold, 1.0,
self.var.DSLR[sLoop] + self.var.DtDay)
# Days since last rain (minimum value=1)
# AvWaterThreshold in mm (Stroosnijder, 1987 in Supit, p. 92)
# Note that this equation was originally designed for DAILY time steps
# to make it work with ANY time step AvWaterThreshold has to be provided
# as an INTENSITY in the binding (AvWaterRateThreshold), which isn't quite
# right (possible solution: keep track of total AvailableWaterForInfiltration
# during last 24 hrs look at this later)
ESMax = self.var.ESRef * self.var.LAITerm[sLoop]
# Maximum evaporation from a shaded soil surface in [mm] per time step
self.var.ESAct[sLoop] = ESMax * (np.sqrt(self.var.DSLR[sLoop]) -
np.sqrt(self.var.DSLR[sLoop] - 1))
# Reduction of actual soil evaporation is assumed to be proportional to the
# square root of time
# ESAct in [mm] per timestep
self.var.ESAct[sLoop] = np.minimum(
self.var.ESAct[sLoop], self.var.W1[sLoop] - self.var.WRes1[sLoop])
# either ESAct or availabe water from layer 1a and 1b
self.var.ESAct[sLoop] = np.where(
self.var.FrostIndex > self.var.FrostIndexThreshold,
maskinfo.in_zero(), self.var.ESAct[sLoop])
# soil evaporation is 0 when soil is frozen
self.var.ESAct[sLoop] = np.maximum(self.var.ESAct[sLoop],
maskinfo.in_zero())
# distributing ESAct over layer 1a and 1b, take the water from 1a first
testSupply1a = self.var.W1a[sLoop] - self.var.WRes1a[sLoop]
EsAct1a = np.where(self.var.ESAct[sLoop] > testSupply1a, testSupply1a,
self.var.ESAct[sLoop])
EsAct1b = np.maximum(self.var.ESAct[sLoop] - testSupply1a,
maskinfo.in_zero())
self.var.W1a[sLoop] = self.var.W1a[sLoop] - EsAct1a
self.var.W1b[sLoop] = self.var.W1b[sLoop] - EsAct1b
self.var.W1[sLoop] = np.add(self.var.W1a[sLoop], self.var.W1b[sLoop])
# evaporation is subtracted from W1a (top layer) and W1b
# ************************************************************
# ***** INFILTRATION CAPACITY ********************************
# ************************************************************
# Domain: permeable fraction of pixel only
#print np.max(self.var.W1a)
RelSat1 = np.where(
self.var.PoreSpaceNotZero1a[sLoop],
np.minimum(self.var.W1[sLoop] / self.var.WS1[sLoop], 1.0),
maskinfo.in_zero())
# Relative saturation term of the first two layers. This will allow to have more infiltration
# than the storage capacity of layer 1
# Setting this to a maximum of 1
# will prevent MV creation due to small rounding errors
# 'if' statement prevents division by zero for zero-depth soils
SatFraction = 1 - (1 - RelSat1)**self.var.b_Xinanjiang
# Fraction of pixel that is at saturation as a function of
# the ratio Theta1/ThetaS1. Distribution function taken from
# Zhao,1977, as cited in Todini, 1996 (JoH 175, 339-382)
InfiltrationPot = self.var.StoreMaxPervious[sLoop] * (
1 - SatFraction)**self.var.PowerInfPot * self.var.DtDay
# Potential infiltration per time step [mm], which is the available pore space in the
# pervious fraction of each pixel (1-SatFraction) times the depth of the upper soil layer.
# For derivation see Appendix A in Todini, 1996
InfiltrationPot = np.where(
self.var.FrostIndex > self.var.FrostIndexThreshold,
maskinfo.in_zero(), InfiltrationPot)
# When the soil is frozen (frostindex larger than threshold), potential
# infiltration is zero
# ************************************************************
# ***** PREFERENTIAL FLOW (Rapid bypass soil matrix) *********
# ************************************************************
# Domain: permeable fraction of pixel only
# PrefFlowPixel valid for whole pixel
self.var.PrefFlow[sLoop] = (
RelSat1**self.var.PowerPrefFlow
) * self.var.AvailableWaterForInfiltration[sLoop]
# Assumption: fraction of available water that bypasses the soil matrix
# (added directly to Upper Zone) is power function of the
# relative saturation of the topsoil
self.var.AvailableWaterForInfiltration[sLoop] -= self.var.PrefFlow[
sLoop]
# Update water availabe for infiltration
# ************************************************************
# ***** ACTUAL INFILTRATION AND SURFACE RUNOFF ***************
# ************************************************************
# Domain: permeable fraction of pixel only
# SurfaceRunoff, InfiltrationPixel are valid for whole pixel
self.var.Infiltration[sLoop] = np.maximum(
np.minimum(self.var.AvailableWaterForInfiltration[sLoop],
InfiltrationPot), maskinfo.in_zero())
# infiltration in [mm] per timestep
# Maximum infiltration is equal to Rainfall-Interception-Snow+Snowmelt
# if +Inflitration is more than the maximum storage capacity of layer 1a, than the rest goes to 1b
# could happen because InfiltrationPot is calculated based on layer 1a + 1b
testW1a = self.var.W1a[sLoop] + self.var.Infiltration[sLoop]
# sum up W1a and inflitration to test if it is > saturated WS1a
#self.var.Infiltration[sLoop] = np.where(testW1a > self.var.WS1a[sLoop], self.var.WS1a[sLoop] - self.var.W1a[sLoop] ,self.var.Infiltration[sLoop])
# in case we want to put it to runoff
self.var.W1a[sLoop] = np.minimum(self.var.WS1a[sLoop], testW1a)
self.var.W1b[sLoop] = self.var.W1b[sLoop] + np.where(
testW1a > self.var.WS1a[sLoop], testW1a - self.var.WS1a[sLoop],
maskinfo.in_zero())
# soil moisture amount is adjusted
# ************************************************************
# ***** SOIL MOISTURE: FLUXES BETWEEN SOIL LAYERS **********
# ************************************************************
# Domain: permeable fraction of pixel only
# SeepTopToSubPixel,SeepSubToGWPixel valid for whole pixel
# Flow between layer 1 and 2 and seepage out of layer 2: based on Darcy's
# equation, assuming seepage is entirely gravity-driven,
# so seepage rate equals unsaturated conductivity
# The following calculations are performed to determine how many
# sub-steps are needed to achieve sufficient numerical stability
KUnSat1a, KUnSat1b, KUnSat2 = self.unsaturatedConductivity(
sLoop
) # Unsaturated conductivity at the beginning of this time step [mm/day]
AvailableWater1a = self.var.W1a[sLoop] - self.var.WRes1a[sLoop]
AvailableWater1b = self.var.W1b[sLoop] - self.var.WRes1b[sLoop]
AvailableWater2 = self.var.W2[sLoop] - self.var.WRes2[sLoop]
# Available water in both soil layers [mm]
CapacityLayer1 = self.var.WS1b[sLoop] - self.var.W1b[sLoop]
CapacityLayer2 = self.var.WS2[sLoop] - self.var.W2[sLoop]
# Available storage capacity in subsoil
CourantTopToSubA = np.where(
AvailableWater1a == 0, maskinfo.in_zero(),
KUnSat1a * self.var.DtDay / AvailableWater1a)
CourantTopToSubB = np.where(
AvailableWater1b == 0, maskinfo.in_zero(),
KUnSat1b * self.var.DtDay / AvailableWater1b)
CourantSubToGW = np.where(AvailableWater2 == 0, maskinfo.in_zero(),
KUnSat2 * self.var.DtDay / AvailableWater2)
# Courant condition for computed soil moisture fluxes:
# if Courant gt CourantCrit: sub-steps needed for required numerical accuracy
# 'If'-statement prevents division by zero when available water equals zero:
# in that case the unsaturated conductivity is zero as well, so
# solution will be stable.
CourantSoil = np.maximum(CourantTopToSubA, CourantTopToSubB,
CourantSubToGW)
# Both flow between soil layers and flow out of layer two
# need to be numerically stable, so number of sub-steps is
# based on process with largest Courant number
NoSubS = np.maximum(1, np.ceil(CourantSoil / self.var.CourantCrit))
self.var.NoSubSteps = int(np.nanmax(NoSubS))
# Number of sub-steps needed for required numerical
# accuracy. Always greater than or equal to 1
# (otherwise division by zero!)
# DtSub=self.var.DtDay/NoSubSteps
# HUh whats this:
#DtSub = scalar(self.var.DtDay / mapmaximum(self.var.NoSubSteps))
DtSub = self.var.DtDay / self.var.NoSubSteps
# DtSub=spatial(DtDay)/mapmaximum(NoSubSteps)
# Corresponding sub-timestep [days]
# Soil loop is looping for the maximum of NoSubsteps
# therefore DtSub is calculated as part of the timestep according to
# the maximum of NoSubsteps
WTemp1a = self.var.W1a[sLoop]
WTemp1b = self.var.W1b[sLoop]
WTemp2 = self.var.W2[sLoop]
# Copy current value of W1 and W2 to temporary variables,
# because computed fluxes may need correction for storage
# capacity of subsoil and in case soil is frozen (after loop)
self.var.SeepTopToSubA[sLoop] = 0
self.var.SeepTopToSubB[sLoop] = 0
# Initialize top- to subsoil flux (accumulated value for all sub-steps)
self.var.SeepSubToGW[sLoop] = 0
# Initialize fluxes out of subsoil (accumulated value for all sub-steps)
# Start iterating
#NoSubS = int(mapmaximum(self.var.NoSubSteps))
#NoSubS = self.var.NoSubSteps
for i in range(self.var.NoSubSteps):
if i > 0:
KUnSat1a, KUnSat1b, KUnSat2 = self.unsaturatedConductivity(
sLoop, (WTemp1a, WTemp1b,
WTemp2)) # Unsaturated conductivity [mm/day]
SeepTopToSubSubStepA = np.minimum(KUnSat1a * DtSub, CapacityLayer1)
SeepTopToSubSubStepB = np.minimum(KUnSat1b * DtSub, CapacityLayer2)
# Flux from top- to subsoil (cannot exceed storage capacity
# of layer 2)
SeepSubToGWSubStep = np.minimum(KUnSat2 * DtSub, AvailableWater2)
# Flux out of soil [mm]
# Minimise statement needed for exceptional cases
# when Theta2 becomes lt 0 (possible due to small precision errors)
AvailableWater1a = AvailableWater1a - SeepTopToSubSubStepA
AvailableWater1b = AvailableWater1b + SeepTopToSubSubStepA - SeepTopToSubSubStepB
AvailableWater2 = AvailableWater2 + SeepTopToSubSubStepB - SeepSubToGWSubStep
# Update water balance for layers 1 and 2
WTemp1a = AvailableWater1a + self.var.WRes1a[sLoop]
WTemp1b = AvailableWater1b + self.var.WRes1b[sLoop]
WTemp2 = AvailableWater2 + self.var.WRes2[sLoop]
# Update WTemp1 and WTemp2
CapacityLayer1 = self.var.WS1b[sLoop] - WTemp1b
CapacityLayer2 = self.var.WS2[sLoop] - WTemp2
# Update available storage capacity in layer 2
self.var.SeepTopToSubA[sLoop] += SeepTopToSubSubStepA
self.var.SeepTopToSubB[sLoop] += SeepTopToSubSubStepB
# Update total top- to subsoil flux for this step
self.var.SeepSubToGW[sLoop] += SeepSubToGWSubStep
# Update total flux out of subsoil for this step
self.var.SeepTopToSubA[sLoop] = np.where(
self.var.FrostIndex > self.var.FrostIndexThreshold,
maskinfo.in_zero(), self.var.SeepTopToSubA[sLoop])
self.var.SeepTopToSubB[sLoop] = np.where(
self.var.FrostIndex > self.var.FrostIndexThreshold,
maskinfo.in_zero(), self.var.SeepTopToSubB[sLoop])
# When the soil is frozen (frostindex larger than threshold), seepage
# is zero
self.var.SeepSubToGW[sLoop] = np.where(
self.var.FrostIndex > self.var.FrostIndexThreshold,
maskinfo.in_zero(), self.var.SeepSubToGW[sLoop])
# When the soil is frozen (frostindex larger than threshold), seepage
# is zero
self.var.W1a[
sLoop] = self.var.W1a[sLoop] - self.var.SeepTopToSubA[sLoop]
self.var.W1b[sLoop] = self.var.W1b[sLoop] + self.var.SeepTopToSubA[
sLoop] - self.var.SeepTopToSubB[sLoop]
self.var.W2[sLoop] = self.var.W2[sLoop] + self.var.SeepTopToSubB[
sLoop] - self.var.SeepSubToGW[sLoop]
self.var.W1[sLoop] = np.add(self.var.W1a[sLoop], self.var.W1b[sLoop])
# Update soil moisture amounts in top- and sub soil
self.var.Infiltration[
sLoop] = self.var.Infiltration[sLoop] - np.maximum(
self.var.W1a[sLoop] - self.var.WS1a[sLoop], 0.0)
self.var.W1a[sLoop] = np.minimum(self.var.W1a[sLoop],
self.var.WS1a[sLoop])
# Compute the amount of water that could not infiltrate and add this water to the surface runoff
# Remove the excess of water in the top layer
self.var.Theta1a[sLoop] = np.where(
self.var.PoreSpaceNotZero1a[sLoop],
self.var.W1a[sLoop] / self.var.SoilDepth1a[sLoop],
maskinfo.in_zero())
self.var.Theta1b[sLoop] = np.where(
self.var.PoreSpaceNotZero1b[sLoop],
self.var.W1b[sLoop] / self.var.SoilDepth1b[sLoop],
maskinfo.in_zero())
self.var.Theta2[sLoop] = np.where(
self.var.PoreSpaceNotZero2[sLoop],
self.var.W2[sLoop] / self.var.SoilDepth2[sLoop],
maskinfo.in_zero())
# Calculate volumetric soil moisture contents of top- and sub soil
# [V/V]
self.var.Sat1a[sLoop] = (self.var.W1a[sLoop] - self.var.WWP1a[sLoop]
) / (self.var.WFC1a[sLoop] -
self.var.WWP1a[sLoop])
self.var.Sat1b[sLoop] = (self.var.W1b[sLoop] - self.var.WWP1b[sLoop]
) / (self.var.WFC1b[sLoop] -
self.var.WWP1b[sLoop])
self.var.Sat1[sLoop] = (self.var.W1[sLoop] - self.var.WWP1[sLoop]) / (
self.var.WFC1[sLoop] - self.var.WWP1[sLoop])
self.var.Sat2[sLoop] = (self.var.W2[sLoop] - self.var.WWP2[sLoop]) / (
self.var.WFC2[sLoop] - self.var.WWP2[sLoop])
## Calculate the saturation term with respect to the WP and FC values. This will indicate potential stress
# ************************************************************
# ***** CALCULATION OF PF VALUES FROM SOIL MOISTURE (OPTIONAL)
# ************************************************************
if option['simulatePF']:
SatTerm1a = np.where(
self.var.PoreSpaceNotZero1a[sLoop],
(self.var.W1a[sLoop] - self.var.WRes1[sLoop]) /
(self.var.WS1[sLoop] - self.var.WRes1[sLoop]),
maskinfo.in_zero())
SatTerm1b = np.where(
self.var.PoreSpaceNotZero1b[sLoop],
(self.var.W1b[sLoop] - self.var.WRes1[sLoop]) /
(self.var.WS1[sLoop] - self.var.WRes1[sLoop]),
maskinfo.in_zero())
SatTerm2 = np.where(self.var.PoreSpaceNotZero2[sLoop],
(self.var.W2[sLoop] - self.var.WRes2[sLoop]) /
(self.var.WS2[sLoop] - self.var.WRes2[sLoop]),
maskinfo.in_zero())
SatTerm1a = np.maximum(np.minimum(SatTerm1a, 1),
maskinfo.in_zero())
SatTerm1b = np.maximum(np.minimum(SatTerm1b, 1),
maskinfo.in_zero())
SatTerm2 = np.maximum(np.minimum(SatTerm2, 1), maskinfo.in_zero())
# Saturation term in Van Genuchten equation
Head1a = np.where(
SatTerm1a == 0, self.var.HeadMax,
np.minimum(
self.var.HeadMax, self.var.GenuInvAlpha1a[sLoop] *
((1 / SatTerm1a)**self.var.GenuInvM1a[sLoop] - 1)**
self.var.GenuInvN1a[sLoop]))
Head1b = np.where(
SatTerm1b == 0, self.var.HeadMax,
np.minimum(
self.var.HeadMax, self.var.GenuInvAlpha1b[sLoop] *
((1 / SatTerm1b)**self.var.GenuInvM1b[sLoop] - 1)**
self.var.GenuInvN1b[sLoop]))
Head2 = np.where(
SatTerm2 == 0, self.var.HeadMax,
np.minimum(
self.var.HeadMax, self.var.GenuInvAlpha2[sLoop] *
((1 / SatTerm2)**self.var.GenuInvM2[sLoop] - 1)**
self.var.GenuInvN2[sLoop]))
# Compute capillary heads for both soil layers [cm]
self.var.pF0[sLoop] = np.where(Head1a > 0, np.log10(Head1a), -1)
self.var.pF1[sLoop] = np.where(Head1b > 0, np.log10(Head1b), -1)
self.var.pF2[sLoop] = np.where(Head2 > 0, np.log10(Head2), -1)
# Compute pF. Set to -1 should heads become equal to mor less than 0. No idea
# if this can even actually happen (copied this from old LISFLOOD version) but it
# shouldn't do any harm.
# ************************************************************
# ***** GROUNDWATER TRANSFER TO CHANNEL NETWORK ***
# ************************************************************
# Domain: permeable fraction of pixel only
# UZOutflowPixel, LZOutflowToChannelPixel, GwLossPixel valid for whole
# pixel
self.var.UZOutflow[sLoop] = np.minimum(
self.var.UpperZoneK * self.var.UZ[sLoop], self.var.UZ[sLoop])
# Outflow out of upper zone [mm]
self.var.UZ[sLoop] = np.maximum(
self.var.UZ[sLoop] - self.var.UZOutflow[sLoop], maskinfo.in_zero())
# Update upper-, lower zone storage
# ************************************************************
# ***** TOTAL RUNOFF *****************************************
# ************************************************************
# Domain: whole pixel
# TotalRunoff=SurfaceRunoff+UZOutflowPixel+LZOutflowToChannelPixel
# Total runoff for this time step [mm]
# Only calculated for reporting purposes!
# ************************************************************
# ***** UPPER- AND LOWER ZONE STORAGE ************************
# ************************************************************
# Domain: permeable fraction of pixel only
# GwPercUZLZPixel valid for whole pixel
if option['drainedIrrigation'] and sLoop == 2:
self.var.UZOutflow[
sLoop] += self.var.DrainedFraction * self.var.SeepSubToGW[sLoop]
self.var.UZ[sLoop] += (
1 - self.var.DrainedFraction
) * self.var.SeepSubToGW[sLoop] + self.var.PrefFlow[sLoop]
# use map of drainage systems, to determine return flow (if drained, all percolation to channel within day;
# if not, all normal soil processes)
else:
self.var.UZ[sLoop] += self.var.SeepSubToGW[
sLoop] + self.var.PrefFlow[sLoop]
# water in upper response box [mm]
self.var.GwPercUZLZ[sLoop] = np.minimum(self.var.GwPercStep,
self.var.UZ[sLoop])
# percolation from upper to lower response box in [mm] per timestep
# maximum value is controlled by GwPercStep (which is
# GwPercValue*DtDay)
self.var.UZ[sLoop] = np.maximum(
self.var.UZ[sLoop] - self.var.GwPercUZLZ[sLoop],
maskinfo.in_zero())
def test_progress():
from time import sleep
for index, item in ShowingProgress(range(100), seconds=4):
sleep(.237)
def writenet(flag,
inputmap,
netfile,
DtDay,
value_standard_name,
value_long_name,
value_unit,
data_format,
startdate,
repstepstart,
repstepend,
frequency=None):
""" Write a netcdf stack
:param flag: 0 netCDF file format; ?
:param inputmap: values to be written to NetCDF file
:param netfile: name of output file in NetCDF format
:param DtDay: model timestep (self.var.DtDay)
:param value_standard_name: variable name to be put into netCDF file
:param value_long_name: variable long name to be put into netCDF file
:param value_unit: variable unit to be put into netCDF file
:param data_format: data format
:param startdate: reference date to be used to get start date and end date for netCDF file from start step and end step
:param: repstepstart: first reporting step
:param: repstepend: final reporting step
:param frequency:[None,'all','monthly','annual'] save to netCDF stack; None save to netCDF single
:return:
"""
# prefix = netfile.split('/')[-1].split('\\')[-1].split('.')[0]
settings = LisSettings.instance()
binding = settings.binding
flags = settings.flags
prefix = os.path.basename(netfile)
netfile += ".nc"
cutmap = CutMap.instance()
row = np.abs(cutmap.cuts[3] - cutmap.cuts[2])
col = np.abs(cutmap.cuts[1] - cutmap.cuts[0])
if flag == 0:
nf1 = iterOpenNetcdf(netfile, "", 'w', format='NETCDF4')
# general Attributes
nf1.settingsfile = os.path.realpath(sys.argv[1])
nf1.date_created = xtime.ctime(xtime.time())
nf1.Source_Software = 'Lisflood Python'
nf1.institution = "European Commission DG Joint Research Centre (JRC) - E1, D2 Units"
nf1.creator_name = "Peter Burek, A de Roo, Johan van der Knijff"
nf1.source = 'Lisflood output maps'
nf1.keywords = "Lisflood, EFAS, GLOFAS"
nf1.Conventions = 'CF-1.6'
# Dimension
not_valid_attrs = ('_FillValue', )
meta_netcdf = NetCDFMetadata.instance()
if 'x' in meta_netcdf.data:
lon = nf1.createDimension('x', col) # x 1000
longitude = nf1.createVariable('x', 'f8', ('x', ))
valid_attrs = [
i for i in meta_netcdf.data['x'] if i not in not_valid_attrs
]
for i in valid_attrs:
setattr(longitude, i, meta_netcdf.data['x'][i])
if 'lon' in meta_netcdf.data:
lon = nf1.createDimension('lon', col)
longitude = nf1.createVariable('lon', 'f8', ('lon', ))
valid_attrs = [
i for i in meta_netcdf.data['lon'] if i not in not_valid_attrs
]
for i in valid_attrs:
setattr(longitude, i, meta_netcdf.data['lon'][i])
if 'y' in meta_netcdf.data:
lat = nf1.createDimension('y', row) # x 950
latitude = nf1.createVariable('y', 'f8', ('y', ))
valid_attrs = [
i for i in meta_netcdf.data['y'] if i not in not_valid_attrs
]
for i in valid_attrs:
setattr(latitude, i, meta_netcdf.data['y'][i])
if 'lat' in meta_netcdf.data:
lat = nf1.createDimension('lat', row) # x 950
latitude = nf1.createVariable('lat', 'f8', ('lat', ))
valid_attrs = [
i for i in meta_netcdf.data['lat'] if i not in not_valid_attrs
]
for i in valid_attrs:
setattr(latitude, i, meta_netcdf.data['lat'][i])
# projection
if 'laea' in meta_netcdf.data:
proj = nf1.createVariable('laea', 'i4')
for i in meta_netcdf.data['laea']:
setattr(proj, i, meta_netcdf.data['laea'][i])
if 'lambert_azimuthal_equal_area' in meta_netcdf.data:
proj = nf1.createVariable('lambert_azimuthal_equal_area', 'i4')
for i in meta_netcdf.data['lambert_azimuthal_equal_area']:
setattr(proj, i,
meta_netcdf.data['lambert_azimuthal_equal_area'][i])
"""
EUROPE
proj.grid_mapping_name='lambert_azimuthal_equal_area'
proj.false_easting=4321000.0
proj.false_northing=3210000.0
proj.longitude_of_projection_origin = 10.0
proj.latitude_of_projection_origin = 52.0
proj.semi_major_axis = 6378137.0
proj.inverse_flattening = 298.257223563
proj.proj4_params = "+proj=laea +lat_0=52 +lon_0=10 +x_0=4321000 +y_0=3210000 +ellps=GRS80 +units=m +no_defs"
proj.EPSG_code = "EPSG:3035"
"""
# Fill variables
cell = round(pcraster.clone().cellSize(), 5)
xl = round((pcraster.clone().west() + cell / 2), 5)
xr = round((xl + col * cell), 5)
yu = round((pcraster.clone().north() - cell / 2), 5)
yd = round((yu - row * cell), 5)
#lats = np.arange(yu, yd, -cell)
#lons = np.arange(xl, xr, cell)
lats = np.linspace(yu, yd, row, endpoint=False)
lons = np.linspace(xl, xr, col, endpoint=False)
latitude[:] = lats
longitude[:] = lons
if frequency is not None: # output file with "time" dimension
#Get initial and final dates for data to be stored in nerCDF file
first_date, last_date = [
startdate + datetime.timedelta(days=(int(k) - 1) * DtDay)
for k in (repstepstart, repstepend)
]
# CM: Create time stamps for each step stored in netCDF file
time_stamps = [
first_date + datetime.timedelta(days=d * DtDay)
for d in range(repstepend - repstepstart + 1)
]
units_time = 'days since %s' % startdate.strftime(
"%Y-%m-%d %H:%M:%S.0")
steps = (int(binding["DtSec"]) / 86400.) * np.arange(
binding["StepStartInt"] - 1, binding["StepEndInt"])
if frequency != "all":
dates = num2date(steps, units_time, binding["calendar_type"])
next_date_times = np.array([
j + datetime.timedelta(seconds=int(binding["DtSec"]))
for j in dates
])
if frequency == "monthly":
months_end = np.array([
dates[j].month != next_date_times[j].month
for j in range(steps.size)
])
steps = steps[months_end]
elif frequency == "annual":
years_end = np.array([
dates[j].year != next_date_times[j].year
for j in range(steps.size)
])
steps = steps[years_end]
nf1.createDimension('time', steps.size)
time = nf1.createVariable('time', float, ('time'))
time.standard_name = 'time'
# time.units ='days since 1990-01-01 00:00:00.0'
# time.units = 'hours since %s' % startdate.strftime("%Y-%m-%d %H:%M:%S.0")
# CM: select the time unit according to model time step
DtDay_in_sec = DtDay * 86400
if DtDay_in_sec >= 86400:
# Daily model time steps or larger
time.units = 'days since %s' % startdate.strftime(
"%Y-%m-%d %H:%M:%S.0")
elif DtDay_in_sec >= 3600 and DtDay_in_sec < 86400:
# CM: hours to days model time steps
time.units = 'hours since %s' % startdate.strftime(
"%Y-%m-%d %H:%M:%S.0")
elif DtDay_in_sec >= 60 and DtDay_in_sec < 3600:
# CM: minutes to hours model time step
time.units = 'minutes since %s' % startdate.strftime(
"%Y-%m-%d %H:%M:%S.0")
time.calendar = binding["calendar_type"]
nf1.variables["time"][:] = date2num(time_stamps, time.units,
time.calendar)
# for i in metadataNCDF['time']: exec('%s="%s"') % ("time."+i, metadataNCDF['time'][i])
if 'x' in meta_netcdf.data:
value = nf1.createVariable(prefix,
data_format, ('time', 'y', 'x'),
zlib=True,
fill_value=-9999,
chunksizes=(1, row, col))
if 'lon' in meta_netcdf.data:
value = nf1.createVariable(prefix,
data_format, ('time', 'lat', 'lon'),
zlib=True,
fill_value=-9999,
chunksizes=(1, row, col))
else:
if 'x' in meta_netcdf.data:
value = nf1.createVariable(prefix,
data_format, ('y', 'x'),
zlib=True,
fill_value=-9999)
if 'lon' in meta_netcdf.data:
# for world lat/lon coordinates
value = nf1.createVariable(prefix,
data_format, ('lat', 'lon'),
zlib=True,
fill_value=-9999)
value.standard_name = value_standard_name
value.long_name = value_long_name
value.units = value_unit
for var in meta_netcdf.data:
if "esri_pe_string" in meta_netcdf.data[var]:
value.esri_pe_string = meta_netcdf.data[var]['esri_pe_string']
else:
nf1 = iterOpenNetcdf(netfile, "", 'a', format='NETCDF4')
if flags['nancheck']:
nanCheckMap(inputmap, netfile, value_standard_name)
maskinfo = MaskInfo.instance()
mapnp = maskinfo.info.maskall.copy()
mapnp[~maskinfo.info.maskflat] = inputmap[:]
#mapnp = mapnp.reshape(maskinfo['shape']).data
mapnp = mapnp.reshape(maskinfo.info.shape)
if frequency is not None:
nf1.variables[prefix][flag, :, :] = mapnp
#value[flag,:,:]= mapnp
else:
# without timeflag
nf1.variables[prefix][:, :] = mapnp
nf1.close()
def test_percentage():
from time import sleep
for index, item in ShowingPercentage(range(100), max=100, granularity=4):
sleep(.5)
def test_progress():
from time import sleep
for index, item in ShowingProgress(range(100), seconds=4):
sleep(.237)
def random_string(length, chars='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
'abcdefghijklmnopqrstuvwxyz'
'0123456789'):
'''Returns a random string of some `length`.'''
return ''.join((random.choice(chars) for i in range(length)))
def dynamic_inloop(self, NoRoutingExecuted):
""" dynamic part of the lake routine
inside the sub time step routing routine
"""
# ************************************************************
# ***** RESERVOIR
# ************************************************************
settings = LisSettings.instance()
option = settings.options
maskinfo = MaskInfo.instance()
if option['simulateReservoirs']:
InvDtSecDay = 1 / 86400.
# InvDtSecDay=self.var.InvDtSec
# ReservoirInflow = cover(ifthen(defined(self.var.ReservoirSites), upstream(
# self.var.LddStructuresKinematic, self.var.ChanQ)), scalar(0.0))
ReservoirInflowCC = np.bincount(self.var.downstruct, weights=self.var.ChanQ)[self.var.ReservoirIndex]
# ReservoirInflow=cover(ifpcr(defined(self.var.ReservoirSites),upstream(self.var.LddStructuresKinematic,self.var.ChanQ)),null)
# Reservoir inflow in [m3/s]
# 20-2-2006: Replaced ChanQKin by ChanQ (if this results in problems change back to ChanQKin!)
# 21-2-2006: Inflow now taken from 1st upstream cell(s), using LddStructuresKinematic
# (LddStructuresKinematic equals LddKinematic, but without the pits/sinks upstream of the structure
# locations; note that using Ldd here instead would introduce MV!)
QResInM3Dt = ReservoirInflowCC * self.var.DtRouting
# Reservoir inflow in [m3] per timestep (routing step)
self.var.ReservoirStorageM3CC += QResInM3Dt
# New reservoir storage [m3] = plus inflow for this sub step
self.var.ReservoirFillCC = self.var.ReservoirStorageM3CC / self.var.TotalReservoirStorageM3CC
# New reservoir fill (fraction)
ReservoirOutflow1 = np.minimum(self.var.MinReservoirOutflowCC, self.var.ReservoirStorageM3CC * InvDtSecDay)
# Reservoir outflow [m3/s] if ReservoirFill le
# 2*ConservativeStorageLimit
ReservoirOutflow2 = self.var.MinReservoirOutflowCC + self.var.DeltaO * (self.var.ReservoirFillCC - 2 * self.var.ConservativeStorageLimitCC) / self.var.DeltaLN
# Reservoir outflow [m3/s] if NormalStorageLimit le ReservoirFill
# gt 2*ConservativeStorageLimit
ReservoirOutflow3a = self.var.NormalReservoirOutflowCC
ReservoirOutflow3b = self.var.NormalReservoirOutflowCC + ((self.var.ReservoirFillCC - self.var.Normal_FloodStorageLimitCC) / self.var.DeltaNFL) * (self.var.NonDamagingReservoirOutflowCC - self.var.NormalReservoirOutflowCC)
# Reservoir outflow [m3/s] if FloodStorageLimit le ReservoirFill gt NormalStorageLimit
# NEW 24-9-2004: linear transition between normal and non-damaging
# outflow.
#ReservoirOutflow4 = np.maximum((self.var.ReservoirFillCC - self.var.FloodStorageLimitCC) *
# self.var.TotalReservoirStorageM3CC * self.var.InvDtSec, self.var.NonDamagingReservoirOutflowCC)
temp = np.minimum(self.var.NonDamagingReservoirOutflowCC, np.maximum(ReservoirInflowCC * 1.2, self.var.NormalReservoirOutflowCC))
ReservoirOutflow4 = np.maximum((self.var.ReservoirFillCC - self.var.FloodStorageLimitCC-0.01) *
self.var.TotalReservoirStorageM3CC * InvDtSecDay, temp)
# Reservoir outflow [m3/s] if ReservoirFill gt FloodStorageLimit
# Depending on ReservoirFill the reservoir outflow equals ReservoirOutflow1, ReservoirOutflow2,
# ReservoirOutflow3 or ReservoirOutflow4
ReservoirOutflow = ReservoirOutflow1.copy()
ReservoirOutflow = np.where(self.var.ReservoirFillCC > 2 * self.var.ConservativeStorageLimitCC, ReservoirOutflow2, ReservoirOutflow)
# ReservoirOutflow = np.where(self.var.ReservoirFillCC > self.var.NormalStorageLimitCC,
# ReservoirOutflow3, ReservoirOutflow)
ReservoirOutflow = np.where(self.var.ReservoirFillCC > self.var.NormalStorageLimitCC,
ReservoirOutflow3a, ReservoirOutflow)
ReservoirOutflow = np.where(self.var.ReservoirFillCC > self.var.Normal_FloodStorageLimitCC,
ReservoirOutflow3b, ReservoirOutflow)
ReservoirOutflow = np.where(self.var.ReservoirFillCC > self.var.FloodStorageLimitCC, ReservoirOutflow4, ReservoirOutflow)
temp = np.minimum(ReservoirOutflow,np.maximum(ReservoirInflowCC, self.var.NormalReservoirOutflowCC))
ReservoirOutflow = np.where((ReservoirOutflow > 1.2 * ReservoirInflowCC) &
(ReservoirOutflow > self.var.NormalReservoirOutflowCC) &
(self.var.ReservoirFillCC < self.var.FloodStorageLimitCC), temp, ReservoirOutflow)
QResOutM3DtCC = ReservoirOutflow * self.var.DtRouting
# Reservoir outflow in [m3] per sub step
QResOutM3DtCC = np.minimum(QResOutM3DtCC, self.var.ReservoirStorageM3CC)
# Check to prevent outflow from becoming larger than storage +
# inflow
QResOutM3DtCC = np.maximum(QResOutM3DtCC, self.var.ReservoirStorageM3CC - self.var.TotalReservoirStorageM3CC)
# NEW 24-9-2004: Check to prevent reservoir storage from exceeding total capacity
# expression to the right of comma always negative unless capacity is exceeded
#self.var.ReservoirStorageM3CC += QResInM3Dt - QResOutM3DtCC
self.var.ReservoirStorageM3CC -= QResOutM3DtCC
# New reservoir storage [m3]
self.var.ReservoirFillCC = self.var.ReservoirStorageM3CC // self.var.TotalReservoirStorageM3CC
# New reservoir fill
# CM: Check ReservoirStorageM3CC for negative values and set them to zero
nel = len(self.var.ReservoirFillCC[:])
for i in range(0, nel-1):
if np.isnan(self.var.ReservoirFillCC[i]) or self.var.ReservoirFillCC[i] < 0:
msg = "Negative or NaN volume for reservoir fill set to 0. Increase computation time step for routing (DtSecChannel) \n"
print(LisfloodWarning(msg))
self.var.ReservoirFillCC[self.var.ReservoirFillCC < 0] = 0
self.var.ReservoirFillCC[np.isnan(self.var.ReservoirFillCC)] = 0
# expanding the size as input for routing routine
self.var.QResOutM3Dt = maskinfo.in_zero()
np.put(self.var.QResOutM3Dt,self.var.ReservoirIndex,QResOutM3DtCC)
# this is put to the channel again at each sub timestep
if option['repsimulateReservoirs']:
if NoRoutingExecuted == 0:
self.var.ReservoirInflowM3S = maskinfo.in_zero()
self.var.ReservoirOutflowM3S = maskinfo.in_zero()
self.var.sumResInCC = QResInM3Dt
self.var.sumResOutCC = QResOutM3DtCC
# for timeseries output - in and outflow to the reservoir is sumed up over the sub timesteps and stored in m/s
# set to zero at first timestep
else:
self.var.sumResInCC += QResInM3Dt
self.var.sumResOutCC += QResOutM3DtCC
# summing up over all sub timesteps
if NoRoutingExecuted == (self.var.NoRoutSteps-1):
# expanding the size after last sub timestep
self.var.ReservoirStorageM3 = maskinfo.in_zero()
self.var.ReservoirFill = maskinfo.in_zero()
np.put(self.var.ReservoirStorageM3, self.var.ReservoirIndex, self.var.ReservoirStorageM3CC)
np.put(self.var.ReservoirFill, self.var.ReservoirIndex, self.var.ReservoirFillCC)
if option['repsimulateReservoirs']:
np.put(self.var.ReservoirInflowM3S, self.var.ReservoirIndex, self.var.sumResInCC // self.var.DtSec)
np.put(self.var.ReservoirOutflowM3S, self.var.ReservoirIndex, self.var.sumResOutCC // self.var.DtSec)
def test_percentage():
from time import sleep
for index, item in ShowingPercentage(range(100), max=100, granularity=4):
sleep(.5)
def dynamic(self):
""" dynamic part of the snow module
"""
maskinfo = MaskInfo.instance()
self.var.Snow = maskinfo.in_zero()
self.var.Rain = maskinfo.in_zero()
self.var.SnowMelt = maskinfo.in_zero()
self.var.SnowCover = maskinfo.in_zero()
# Snowmelt
hemisphere_N = self.var.lat_rad > 0
snowmelt_coeff = np.sin(
np.radians((self.var.CalendarDay - 81) * self.var.SnowDayDegrees))
SeasSnowMeltCoef = self.var.SnowSeason * np.where(
hemisphere_N, snowmelt_coeff, -snowmelt_coeff
) + self.var.SnowMeltCoef # N and S hemispheres have opposite-sign cycles
# Icemelt
#####################################################
# Check if the current day is in the "summer icemelt season" for the Northern (N) and Southern (S) hemispheres
is_summer_icemelt_N = (self.var.CalendarDay > self.icemelt_start_N) & (
self.var.CalendarDay < self.icemelt_end_N)
is_summer_icemelt_S = (self.var.CalendarDay > self.icemelt_start_S) | (
self.var.CalendarDay < self.icemelt_end_S)
# Icemelt coefficient: the sine function is the same for both hemispheres due to the imposed 1/2 periodicity; the mask is shifted 6 months
_ice_melt_coeff = np.sin(
np.radians((self.var.CalendarDay - self.icemelt_start_N) *
self.var.IceDayDegrees))
ice_melt_coeff_N = _ice_melt_coeff if is_summer_icemelt_N else 0
ice_melt_coeff_S = _ice_melt_coeff if is_summer_icemelt_S else 0
SummerSeason = np.where(hemisphere_N, ice_melt_coeff_N,
ice_melt_coeff_S)
#####################################################
# Bugfix for global simulations - LA 17/7/2018 - uncomment to make it work
# This bugfix is on hold waiting for approval from main developer
# Constants
#SVE= 127.5 # Shifted Vernal Equinox (in days) = Vernal Equinox (20 March) + day shift to have the peak of Summer season on a desired day (9th August instead of 21 June)
#Sc = 1361 # Solar constant (not really important in this case, as long as it is divided by a meaningful scale parameter)
#SCp= 400 # Scale parameter of the SummerSeason coefficient
#SHp= 0.6 # Shape parameter of the SummerSeason coefficient
#LatRad = 2*np.pi*self.var.lat_rad/360 #Latitude in radians
#Dec = np.arcsin(0.3987*np.sin(2*np.pi*(self.var.CalendarDay-SVE)/365.25)) #Declination (i.e., CalendarDay in radians)
#H1 = np.arccos(np.sign(-1*np.tan(Dec)*np.tan(LatRad)))
#H0 = np.arccos(-1*np.tan(Dec)*np.tan(LatRad))
#SSc1=np.maximum(0,Sc/np.pi*(H1*np.sin(LatRad)*np.sin(Dec)+np.sin(H1)*np.cos(LatRad)*np.cos(Dec))/SCp-SHp)
#SSc0=np.maximum(0,Sc/np.pi*(H0*np.sin(LatRad)*np.sin(Dec)+np.sin(H0)*np.cos(LatRad)*np.cos(Dec))/SCp-SHp)
#mask = np.absolute(-1*np.tan(Dec)*np.tan(LatRad))>1
# SScoef=np.where(mask,SSc1,SSc0) # org
#SummerSeason=np.where(mask,SSc1,SSc0) # changed name back to SummerSeason
########################################################
#Previous version with hardcoded dates:
#if (self.var.CalendarDay > 165) and (self.var.CalendarDay < 260):
# SummerSeason = np.sin(math.radians((self.var.CalendarDay - 165) * self.var.IceDayDegrees))
#else:
# SummerSeason = 0.0
########################################################
for i in range(3):
TavgS = self.var.Tavg + self.var.DeltaTSnow * (i - 1)
# Temperature at center of each zone (temperature at zone B equals Tavg)
# i=0 -> highest zone
# i=2 -> lower zone
SnowS = np.where(TavgS < self.var.TempSnow,
self.var.SnowFactor * self.var.Precipitation,
maskinfo.in_zero())
# Precipitation is assumed to be snow if daily average temperature is below TempSnow
# Snow is multiplied by correction factor to account for undercatch of
# snow precipitation (which is common)
RainS = np.where(TavgS >= self.var.TempSnow,
self.var.Precipitation, maskinfo.in_zero())
# if it's snowing then no rain
SnowMeltS = (TavgS - self.var.TempMelt) * SeasSnowMeltCoef * (
1 + 0.01 * RainS) * self.var.DtDay
if i < 2:
IceMeltS = self.var.Tavg * 7.0 * self.var.DtDay * SummerSeason
# if i = 0 and 1 -> higher and middle zone
else:
IceMeltS = TavgS * 7.0 * self.var.DtDay * SummerSeason
SnowMeltS = np.maximum(
np.minimum(SnowMeltS + IceMeltS, self.var.SnowCoverS[i]),
maskinfo.in_zero())
self.var.SnowCoverS[i] = self.var.SnowCoverS[i] + SnowS - SnowMeltS
self.var.Snow += SnowS
self.var.Rain += RainS
self.var.SnowMelt += SnowMeltS
self.var.SnowCover += self.var.SnowCoverS[i]
self.var.Snow /= 3
self.var.Rain /= 3
self.var.SnowMelt /= 3
self.var.SnowCover /= 3
self.var.TotalPrecipitation += self.var.Snow + self.var.Rain
def dynamic(self):
""" Dynamic part of LISFLOOD
calls the dynamic part of the hydrological modules
"""
settings = LisSettings.instance()
option = settings.options
flags = settings.flags
# date corresponding to the model time step (yyyy-mm-dd hh:mm:ss)
self.CalendarDate = self.CalendarDayStart + datetime.timedelta(days=(self.currentTimeStep()-1) * self.DtDay)
# day of the year corresponding to the model time step
self.CalendarDay = int(self.CalendarDate.strftime("%j"))
# correct method to calculate the day of the year
# model time step
i = self.currentTimeStep()
if i == 1:
# flag for netcdf output for all, steps and end
_ = CDFFlags(uuid.uuid4()) # init CDF flags
self.TimeSinceStart = self.currentTimeStep() - self.firstTimeStep() + 1
if flags['loud']:
print("%-6i %10s" % (self.currentTimeStep(), self.CalendarDate.strftime("%d/%m/%Y %H:%M")))
else:
if not flags['checkfiles']:
if flags['quiet'] and not flags['veryquiet']:
sys.stdout.write(".")
if not flags['quiet'] and not flags['veryquiet']:
# Print step number and date to console
sys.stdout.write("\r%d" % i), sys.stdout.write("%s" % " - "+self.CalendarDate.strftime("%d/%m/%Y %H:%M"))
sys.stdout.flush()
if i == self.nrTimeSteps():
# last timestep. Send a new line to the terminal for polishness
sys.stdout.write('\n')
sys.stdout.flush()
# ************************************************************
""" up to here it was fun, now the real stuff starts
"""
# readmeteo.py
self.readmeteo_module.dynamic()
# timemeasure("Read meteo") # 1. timing after read input maps
if flags['checkfiles']:
return # if check than finish here
""" Here it starts with hydrological modules:
"""
# ***** READ land use fraction maps***************************
self.landusechange_module.dynamic()
# ***** READ LEAF AREA INDEX DATA ****************************
self.leafarea_module.dynamic()
# ***** READ variable water fraction ****************************
self.evapowater_module.dynamic_init()
# ***** READ INFLOW HYDROGRAPHS (OPTIONAL)****************
self.inflow_module.dynamic()
# timemeasure("Read LAI") # 2. timing after LAI and inflow
# ***** RAIN AND SNOW *****************************************
self.snow_module.dynamic()
# timemeasure("Snow") # 3. timing after LAI and inflow
# ***** FROST INDEX IN SOIL **********************************
self.frost_module.dynamic()
# timemeasure("Frost") # 4. timing after frost index
# ************************************************************
# ****Looping soil 2 times - second time for forest fraction *
# ************************************************************
for soilLoop in range(3):
self.soilloop_module.dynamic(soilLoop)
# soil module is repeated 2 times:
# 1. for remaining areas: no forest, no impervious, no water
# 2. for forested areas
# timemeasure("Soil",loops = soilLoop + 1) # 5/6 timing after soil
# -------------------------------------------------------------------
# -------------------------------------------------------------------
# ***** ACTUAL EVAPORATION FROM OPEN WATER AND SEALED SOIL ***
self.opensealed_module.dynamic()
# ********* WATER USE *************************
self.riceirrigation_module.dynamic()
self.waterabstraction_module.dynamic()
# timemeasure("Water abstraction")
# ***** Calculation per Pixel ********************************
self.soil_module.dynamic_perpixel()
# timemeasure("Soil done")
self.groundwater_module.dynamic()
# timemeasure("Groundwater")
# ************************************************************
# ***** STOP if no routing is required ********************
# ************************************************************
if option['InitLisfloodwithoutSplit']:
# InitLisfloodwithoutSplit
# Very fast InitLisflood
# it is only to compute Lzavin.map and skip completely the routing component
self.output_module.dynamic() # only lzavin
return
# ********* EVAPORATION FROM OPEN WATER *************
self.evapowater_module.dynamic()
# timemeasure("open water eva.")
# ***** ROUTING SURFACE RUNOFF TO CHANNEL ********************
self.surface_routing_module.dynamic()
# timemeasure("Surface routing") # 7 timing after surface routing
# ***** POLDER INIT **********************************
self.polder_module.dynamic_init()
# ***** INLETS INIT **********************************
self.inflow_module.dynamic_init()
# timemeasure("Before routing") # 8 timing before channel routing
# ************************************************************
# ***** LOOP ROUTING SUB TIME STEP *************************
# ************************************************************
maskinfo = MaskInfo.instance()
self.sumDisDay = maskinfo.in_zero()
# sums up discharge of the sub steps
for NoRoutingExecuted in range(self.NoRoutSteps):
self.routing_module.dynamic(NoRoutingExecuted)
# routing sub steps
# timemeasure("Routing", loops=NoRoutingExecuted + 1) # 9 timing after routing
# ----------------------------------------------------------------------
if option['inflow']:
self.QInM3Old = self.QInM3
# to calculate the parts of inflow for every routing timestep
# for the next timestep the old inflow is preserved
self.sumIn += self.QInDt*self.NoRoutSteps
# if option['simulatePolders']:
# ChannelToPolderM3=ChannelToPolderM3Old;
if option['InitLisflood'] or (not(option['SplitRouting'])):
# kinematic routing
self.ChanM3 = self.ChanM3Kin.copy()
# Total channel storage [cu m], equal to ChanM3Kin
else:
# split routing
self.ChanM3 = self.ChanM3Kin + self.Chan2M3Kin - self.Chan2M3Start
# Avoid negative values in ChanM3 and TotalCrossSectionArea
# self.ChanM3 = np.where(self.ChanM3 > 0, self.ChanM3, 0)
# Total channel storage [cu m], equal to ChanM3Kin
# sum of both lines
# CrossSection2Area = pcraster.max(scalar(0.0), (self.Chan2M3Kin - self.Chan2M3Start) / self.ChanLength)
self.sumDis += self.sumDisDay
self.ChanQAvg = self.sumDisDay/self.NoRoutSteps
self.TotalCrossSectionArea = self.ChanM3 * self.InvChanLength
# Total volume of water in channel per inv channel length
# New cross section area (kinematic wave)
# This is the value after the kinematic wave, so we use ChanM3Kin here
# (NOT ChanQKin, which is average discharge over whole step, we need state at the end of all iterations!)
# timemeasure("After routing") # 10 timing after channel routing
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
if not(option['dynamicWave']):
# Dummy code if dynamic wave is not used, in which case the total cross-section
# area equals TotalCrossSectionAreaKin, ChanM3 equals ChanM3Kin and
# ChanQ equals ChanQKin
WaterLevelDyn = -9999
# Set water level dynamic wave to dummy value (needed
if option['InitLisflood'] or option['repAverageDis']:
self.CumQ += self.ChanQ
self.avgdis = self.CumQ/self.TimeSinceStart
# to calculate average discharge
self.DischargeM3Out += np.where(self.AtLastPointC ,self.ChanQ * self.DtSec,0)
# Cumulative outflow out of map
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# Calculate water level
self.waterlevel_module.dynamic()
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# ************************************************************
# ******* Calculate CUMULATIVE MASS BALANCE ERROR **********
# ************************************************************
self.waterbalance_module.dynamic()
self.indicatorcalc_module.dynamic()
# ************************************************************
# ***** WRITING RESULTS: TIME SERIES AND MAPS ****************
# ************************************************************
self.output_module.dynamic()
# timemeasure("Water balance")
# debug
# Print value of variables after computation (from state files)
if flags['debug']:
nomefile = 'Debug_out_'+str(self.currentStep)+'.txt'
ftemp1 = open(nomefile, 'w+')
nelements = len(self.ChanM3)
for i in range(0,nelements-1):
if hasattr(self,'CrossSection2Area'):
print(i, self.TotalCrossSectionArea[i], self.CrossSection2Area[i], self.ChanM3[i], \
self.Chan2M3Kin[i], file=ftemp1)
else:
print(i, self.TotalCrossSectionArea[i], self.ChanM3[i], file=ftemp1)
ftemp1.close()
### Report states if EnKF is used and filter moment
self.stateVar_module.dynamic()
self.indicatorcalc_module.dynamic_setzero()
# setting monthly and yearly dindicator to zero at the end of the month (year)
# garbage collector added to free memory at the end of computation step
gc.collect()
def get_range():
return range(3)
