class Threedcalc(AFNICommand):
"""
For complete details, see the `3dcalc Documentation.
<http://afni.nimh.nih.gov/pub/dist/doc/program_help/3dcalc.html>`_
"""
@property
def cmd(self):
"""Base command for Threedcalc"""
return '3dcalc'
def inputs_help(self):
doc = """
"""
print doc
def _populate_inputs(self):
"""Initialize the inputs attribute."""
self.inputs = Bunch(
infile_a=None,
expr=None,
session=None,
datum=None,
outfile=None,
)
def _parseinputs(self):
"""Parse valid input options for Threedcalc command.
Ignore options set to None.
"""
out_inputs = []
inputs = {}
[inputs.update({k:v}) for k, v in self.inputs.items() \
if v is not None]
if inputs.has_key('infile_a'):
val = inputs.pop('infile_a')
out_inputs.append('-a %s' % val)
if inputs.has_key('expr'):
val = inputs.pop('expr')
out_inputs.append('-expr %s' % val)
if inputs.has_key('session'):
val = inputs.pop('session')
out_inputs.append('-session %s' % val)
if inputs.has_key('datum'):
val = inputs.pop('datum')
out_inputs.append('-datum %s' % val)
if inputs.has_key('outfile'):
val = inputs.pop('outfile')
out_inputs.append('-prefix %s' % val)
if len(inputs) > 0:
print '%s: unsupported options: %s' % (
self.__class__.__name__, inputs.keys())
return out_inputs
class ThreedBrickStat(AFNICommand):
"""
For complete details, see the `3dBrickStat Documentation.
<http://afni.nimh.nih.gov/pub/dist/doc/program_help/3dBrickStat.html>`_
"""
@property
def cmd(self):
"""Base command for ThreedBrickStat"""
return '3dBrickStat'
def inputs_help(self):
doc = """
"""
print doc
def _populate_inputs(self):
"""Initialize the inputs attribute."""
self.inputs = Bunch(automask=None,
percentile=None,
infile=None)
def _parseinputs(self):
"""Parse valid input options for ThreedBrickStat command.
Ignore options set to None.
"""
out_inputs = []
inputs = {}
[inputs.update({k:v}) for k, v in self.inputs.items() \
if v is not None]
if inputs.has_key('automask'):
val = inputs.pop('automask')
out_inputs.append('-automask')
if inputs.has_key('percentile'):
val = inputs.pop('percentile')
inputssub = {}
[inputssub.update({k:v}) for k, v in val.items() \
if v is not None]
if inputssub.has_key('p0'):
valsub = inputssub.pop('p0')
out_inputs.append('-percentile %s' % str(valsub))
else:
valsub=None
print('Warning: value \'p0\' required for percentile')
if inputssub.has_key('pstep'):
valsub = inputssub.pop('pstep')
out_inputs.append('%s' % str(valsub))
else:
valsub=None
print('Warning: value \'pstep\' required for percentile')
if inputssub.has_key('p1'):
valsub = inputssub.pop('p1')
out_inputs.append('%s' % str(valsub))
else:
valsub=None
print('Warning: value \'p1\' required for percentile')
if inputs.has_key('infile'):
val = inputs.pop('infile')
out_inputs.append('%s' % val)
if len(inputs) > 0:
print '%s: unsupported options: %s' % (
self.__class__.__name__, inputs.keys())
return out_inputs
