def test_Label2Vol_outputs():
output_map = dict(vol_label_file=dict(), )
outputs = Label2Vol.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_Label2Vol_outputs():
output_map = dict(vol_label_file=dict(),
)
outputs = Label2Vol.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_Label2Vol_inputs():
input_map = dict(
annot_file=dict(
argstr='--annot %s',
copyfile=False,
mandatory=True,
requires=('subject_id', 'hemi'),
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
),
aparc_aseg=dict(
argstr='--aparc+aseg',
mandatory=True,
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
),
args=dict(argstr='%s', ),
environ=dict(
nohash=True,
usedefault=True,
),
fill_thresh=dict(argstr='--fillthresh %.f', ),
hemi=dict(argstr='--hemi %s', ),
identity=dict(
argstr='--identity',
xor=('reg_file', 'reg_header', 'identity'),
),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
invert_mtx=dict(argstr='--invertmtx', ),
label_file=dict(
argstr='--label %s...',
copyfile=False,
mandatory=True,
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
),
label_hit_file=dict(argstr='--hits %s', ),
label_voxel_volume=dict(argstr='--labvoxvol %f', ),
map_label_stat=dict(argstr='--label-stat %s', ),
native_vox2ras=dict(argstr='--native-vox2ras', ),
proj=dict(
argstr='--proj %s %f %f %f',
requires=('subject_id', 'hemi'),
),
reg_file=dict(
argstr='--reg %s',
xor=('reg_file', 'reg_header', 'identity'),
),
reg_header=dict(
argstr='--regheader %s',
xor=('reg_file', 'reg_header', 'identity'),
),
seg_file=dict(
argstr='--seg %s',
copyfile=False,
mandatory=True,
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
),
subject_id=dict(argstr='--subject %s', ),
subjects_dir=dict(),
surface=dict(argstr='--surf %s', ),
template_file=dict(
argstr='--temp %s',
mandatory=True,
),
terminal_output=dict(nohash=True, ),
vol_label_file=dict(
argstr='--o %s',
genfile=True,
),
)
inputs = Label2Vol.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_Label2Vol_inputs():
input_map = dict(reg_file=dict(xor=('reg_file', 'reg_header', 'identity'),
argstr='--reg %s',
),
template_file=dict(mandatory=True,
argstr='--temp %s',
),
surface=dict(argstr='--surf %s',
),
label_voxel_volume=dict(argstr='--labvoxvol %f',
),
native_vox2ras=dict(argstr='--native-vox2ras',
),
vol_label_file=dict(argstr='--o %s',
genfile=True,
),
subject_id=dict(argstr='--subject %s',
),
invert_mtx=dict(argstr='--invertmtx',
),
label_hit_file=dict(argstr='--hits %s',
),
proj=dict(requires=('subject_id', 'hemi'),
argstr='--proj %s %f %f %f',
),
reg_header=dict(xor=('reg_file', 'reg_header', 'identity'),
argstr='--regheader %s',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
hemi=dict(argstr='--hemi %s',
),
args=dict(argstr='%s',
),
map_label_stat=dict(argstr='--label-stat %s',
),
terminal_output=dict(mandatory=True,
nohash=True,
),
seg_file=dict(copyfile=False,
mandatory=True,
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
argstr='--seg %s',
),
subjects_dir=dict(),
fill_thresh=dict(argstr='--fillthresh %.f',
),
identity=dict(xor=('reg_file', 'reg_header', 'identity'),
argstr='--identity',
),
environ=dict(nohash=True,
usedefault=True,
),
label_file=dict(copyfile=False,
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
mandatory=True,
argstr='--label %s...',
),
aparc_aseg=dict(xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
mandatory=True,
argstr='--aparc+aseg',
),
annot_file=dict(copyfile=False,
mandatory=True,
xor=('label_file', 'annot_file', 'seg_file', 'aparc_aseg'),
argstr='--annot %s',
requires=('subject_id', 'hemi'),
),
)
inputs = Label2Vol.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
