def test_FIRST_outputs():
output_map = dict(vtk_surfaces=dict(), segmentation_file=dict(), bvars=dict(), original_segmentations=dict())
outputs = FIRST.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_FIRST_outputs():
output_map = dict(bvars=dict(),
original_segmentations=dict(),
segmentation_file=dict(),
vtk_surfaces=dict(),
)
outputs = FIRST.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_FIRST_inputs():
input_map = dict(affine_file=dict(argstr='-a %s',
position=6,
),
args=dict(argstr='%s',
),
brain_extracted=dict(argstr='-b',
position=2,
),
environ=dict(nohash=True,
usedefault=True,
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
in_file=dict(argstr='-i %s',
copyfile=False,
mandatory=True,
position=-2,
),
list_of_specific_structures=dict(argstr='-s %s',
position=5,
sep=',',
),
method=dict(argstr='-m',
position=4,
xor=['method_as_numerical_threshold'],
),
method_as_numerical_threshold=dict(argstr='-m',
position=4,
),
no_cleanup=dict(argstr='-d',
position=3,
),
out_file=dict(argstr='-o %s',
hash_files=False,
mandatory=True,
position=-1,
usedefault=True,
),
output_type=dict(),
terminal_output=dict(mandatory=True,
nohash=True,
),
verbose=dict(argstr='-v',
position=1,
),
)
inputs = FIRST.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_FIRST_inputs():
input_map = dict(
ignore_exception=dict(nohash=True, usedefault=True),
affine_file=dict(position=6, argstr="-a %s"),
list_of_specific_structures=dict(argstr="-s %s", sep=",", position=5),
verbose=dict(position=1, argstr="-v"),
args=dict(argstr="%s"),
brain_extracted=dict(position=2, argstr="-b"),
in_file=dict(position=-2, mandatory=True, argstr="-i %s"),
terminal_output=dict(mandatory=True, nohash=True),
environ=dict(nohash=True, usedefault=True),
no_cleanup=dict(position=3, argstr="-d"),
method_as_numerical_threshold=dict(position=4, argstr="-m"),
output_type=dict(),
method=dict(position=4, xor=["method_as_numerical_threshold"], argstr="-m"),
out_file=dict(hash_files=False, mandatory=True, usedefault=True, position=-1, argstr="-o %s"),
)
inputs = FIRST.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
