def test_BRAINSDemonWarp_outputs():
output_map = dict(outputCheckerboardVolume=dict(),
outputDisplacementFieldVolume=dict(),
outputVolume=dict(),
)
outputs = BRAINSDemonWarp.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_BRAINSDemonWarp_outputs():
output_map = dict(
outputCheckerboardVolume=dict(),
outputDisplacementFieldVolume=dict(),
outputVolume=dict(),
)
outputs = BRAINSDemonWarp.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_BRAINSDemonWarp_inputs():
input_map = dict(
args=dict(argstr='%s', ),
arrayOfPyramidLevelIterations=dict(
argstr='--arrayOfPyramidLevelIterations %s',
sep=',',
),
backgroundFillValue=dict(argstr='--backgroundFillValue %d', ),
checkerboardPatternSubdivisions=dict(
argstr='--checkerboardPatternSubdivisions %s',
sep=',',
),
environ=dict(
nohash=True,
usedefault=True,
),
fixedBinaryVolume=dict(argstr='--fixedBinaryVolume %s', ),
fixedVolume=dict(argstr='--fixedVolume %s', ),
gradient_type=dict(argstr='--gradient_type %s', ),
gui=dict(argstr='--gui ', ),
histogramMatch=dict(argstr='--histogramMatch ', ),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
initializeWithDisplacementField=dict(
argstr='--initializeWithDisplacementField %s', ),
initializeWithTransform=dict(argstr='--initializeWithTransform %s', ),
inputPixelType=dict(argstr='--inputPixelType %s', ),
interpolationMode=dict(argstr='--interpolationMode %s', ),
lowerThresholdForBOBF=dict(argstr='--lowerThresholdForBOBF %d', ),
maskProcessingMode=dict(argstr='--maskProcessingMode %s', ),
max_step_length=dict(argstr='--max_step_length %f', ),
medianFilterSize=dict(
argstr='--medianFilterSize %s',
sep=',',
),
minimumFixedPyramid=dict(
argstr='--minimumFixedPyramid %s',
sep=',',
),
minimumMovingPyramid=dict(
argstr='--minimumMovingPyramid %s',
sep=',',
),
movingBinaryVolume=dict(argstr='--movingBinaryVolume %s', ),
movingVolume=dict(argstr='--movingVolume %s', ),
neighborhoodForBOBF=dict(
argstr='--neighborhoodForBOBF %s',
sep=',',
),
numberOfBCHApproximationTerms=dict(
argstr='--numberOfBCHApproximationTerms %d', ),
numberOfHistogramBins=dict(argstr='--numberOfHistogramBins %d', ),
numberOfMatchPoints=dict(argstr='--numberOfMatchPoints %d', ),
numberOfPyramidLevels=dict(argstr='--numberOfPyramidLevels %d', ),
numberOfThreads=dict(argstr='--numberOfThreads %d', ),
outputCheckerboardVolume=dict(
argstr='--outputCheckerboardVolume %s',
hash_files=False,
),
outputDebug=dict(argstr='--outputDebug ', ),
outputDisplacementFieldPrefix=dict(
argstr='--outputDisplacementFieldPrefix %s', ),
outputDisplacementFieldVolume=dict(
argstr='--outputDisplacementFieldVolume %s',
hash_files=False,
),
outputNormalized=dict(argstr='--outputNormalized ', ),
outputPixelType=dict(argstr='--outputPixelType %s', ),
outputVolume=dict(
argstr='--outputVolume %s',
hash_files=False,
),
promptUser=dict(argstr='--promptUser ', ),
registrationFilterType=dict(argstr='--registrationFilterType %s', ),
seedForBOBF=dict(
argstr='--seedForBOBF %s',
sep=',',
),
smoothDisplacementFieldSigma=dict(
argstr='--smoothDisplacementFieldSigma %f', ),
terminal_output=dict(nohash=True, ),
upFieldSmoothing=dict(argstr='--upFieldSmoothing %f', ),
upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d', ),
use_vanilla_dem=dict(argstr='--use_vanilla_dem ', ),
)
inputs = BRAINSDemonWarp.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_BRAINSDemonWarp_inputs():
input_map = dict(args=dict(argstr='%s',
),
arrayOfPyramidLevelIterations=dict(argstr='--arrayOfPyramidLevelIterations %s',
sep=',',
),
backgroundFillValue=dict(argstr='--backgroundFillValue %d',
),
checkerboardPatternSubdivisions=dict(argstr='--checkerboardPatternSubdivisions %s',
sep=',',
),
environ=dict(nohash=True,
usedefault=True,
),
fixedBinaryVolume=dict(argstr='--fixedBinaryVolume %s',
),
fixedVolume=dict(argstr='--fixedVolume %s',
),
gradient_type=dict(argstr='--gradient_type %s',
),
gui=dict(argstr='--gui ',
),
histogramMatch=dict(argstr='--histogramMatch ',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
initializeWithDisplacementField=dict(argstr='--initializeWithDisplacementField %s',
),
initializeWithTransform=dict(argstr='--initializeWithTransform %s',
),
inputPixelType=dict(argstr='--inputPixelType %s',
),
interpolationMode=dict(argstr='--interpolationMode %s',
),
lowerThresholdForBOBF=dict(argstr='--lowerThresholdForBOBF %d',
),
maskProcessingMode=dict(argstr='--maskProcessingMode %s',
),
max_step_length=dict(argstr='--max_step_length %f',
),
medianFilterSize=dict(argstr='--medianFilterSize %s',
sep=',',
),
minimumFixedPyramid=dict(argstr='--minimumFixedPyramid %s',
sep=',',
),
minimumMovingPyramid=dict(argstr='--minimumMovingPyramid %s',
sep=',',
),
movingBinaryVolume=dict(argstr='--movingBinaryVolume %s',
),
movingVolume=dict(argstr='--movingVolume %s',
),
neighborhoodForBOBF=dict(argstr='--neighborhoodForBOBF %s',
sep=',',
),
numberOfBCHApproximationTerms=dict(argstr='--numberOfBCHApproximationTerms %d',
),
numberOfHistogramBins=dict(argstr='--numberOfHistogramBins %d',
),
numberOfMatchPoints=dict(argstr='--numberOfMatchPoints %d',
),
numberOfPyramidLevels=dict(argstr='--numberOfPyramidLevels %d',
),
numberOfThreads=dict(argstr='--numberOfThreads %d',
),
outputCheckerboardVolume=dict(argstr='--outputCheckerboardVolume %s',
hash_files=False,
),
outputDebug=dict(argstr='--outputDebug ',
),
outputDisplacementFieldPrefix=dict(argstr='--outputDisplacementFieldPrefix %s',
),
outputDisplacementFieldVolume=dict(argstr='--outputDisplacementFieldVolume %s',
hash_files=False,
),
outputNormalized=dict(argstr='--outputNormalized ',
),
outputPixelType=dict(argstr='--outputPixelType %s',
),
outputVolume=dict(argstr='--outputVolume %s',
hash_files=False,
),
promptUser=dict(argstr='--promptUser ',
),
registrationFilterType=dict(argstr='--registrationFilterType %s',
),
seedForBOBF=dict(argstr='--seedForBOBF %s',
sep=',',
),
smoothDisplacementFieldSigma=dict(argstr='--smoothDisplacementFieldSigma %f',
),
terminal_output=dict(mandatory=True,
nohash=True,
),
upFieldSmoothing=dict(argstr='--upFieldSmoothing %f',
),
upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d',
),
use_vanilla_dem=dict(argstr='--use_vanilla_dem ',
),
)
inputs = BRAINSDemonWarp.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value