def __init__(self, **inputs):
_local_version = SPMCommand().version
if _local_version and '12.' in _local_version:
self._jobtype = 'spatial'
self._jobname = 'preproc'
else:
self._jobtype = 'tools'
self._jobname = 'preproc8'
SPMCommand.__init__(self, **inputs)
def test_SPMCommand_inputs():
input_map = dict(ignore_exception=dict(nohash=True,
usedefault=True,
),
paths=dict(),
use_v8struct=dict(min_ver='8',
usedefault=True,
),
use_mcr=dict(),
matlab_cmd=dict(),
mfile=dict(usedefault=True,
),
)
inputs = SPMCommand.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_SPMCommand_inputs():
input_map = dict(
ignore_exception=dict(
nohash=True,
usedefault=True,
),
matlab_cmd=dict(),
mfile=dict(usedefault=True, ),
paths=dict(),
use_mcr=dict(),
use_v8struct=dict(
min_ver='8',
usedefault=True,
),
)
inputs = SPMCommand.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
__author__ = "Jorge Samper-Gonzalez"
__copyright__ = "Copyright 2016-2019 The Aramis Lab Team"
__credits__ = ["Jorge Samper-Gonzalez"]
__license__ = "See LICENSE.txt file"
__version__ = "0.1.0"
__maintainer__ = "Jorge Samper-Gonzalez"
__email__ = "*****@*****.**"
__status__ = "Development"
if 'SPMSTANDALONE_HOME' in os.environ:
if 'MCR_HOME' in os.environ:
matlab_cmd = os.environ['SPMSTANDALONE_HOME'] \
+ 'run_spm12.sh ' \
+ os.environ['MCR_HOME'] \
+ ' script'
SPMCommand.set_mlab_paths(matlab_cmd=matlab_cmd, use_mcr=True)
class DARTELExistingTemplateInputSpec(SPMCommandInputSpec):
image_files = traits.List(traits.List(File(exists=True)),
desc="A list of files to be segmented",
field='warp1.images',
copyfile=False,
mandatory=True)
regularization_form = traits.Enum(
'Linear',
'Membrane',
'Bending',
field='warp1.settings.rform',
desc='Form of regularization energy term')
iteration_parameters = traits.List(