def fromBruker(file, remove_filter=True, read_pdata=True):
dic, data = bruker.read(file)
if read_pdata:
pdata_file = find_pdata(file, data.ndim)
if (pdata_file is not None):
procs, data = bruker.read_pdata(pdata_file)
else:
read_pdata = False
if remove_filter and not read_pdata:
if ng_version > 0.5:
data = bruker.remove_digital_filter(dic, data, True)
else:
data = bruker.remove_digital_filter(dic, data)
u = bruker.guess_udic(dic, data)
u["original_format"] = 'Bruker'
u["Name"] = get_name(file)
if (read_pdata):
for i in range(0, data.ndim):
u[i]['complex'] = False
u[i]['freq'] = True
u[i]['time'] = False
uc = [uc_from_udic(u, dim) for dim in range(0, data.ndim)]
if read_pdata and 'procs' in procs.keys():
proc_names = ['procs', 'proc2s']
for i, uc_i in enumerate(uc[::-1]):
if procs[proc_names[i]] and procs[proc_names[i]]['OFFSET']:
uc_i._first = procs[proc_names[i]]['OFFSET']
return NMRSpectrum(data, udic=u, uc=uc)
def fromBruker(file, remove_filter=True, read_pdata=True):
dic, data = bruker.read(file);
if read_pdata:
pdata_file = find_pdata(file, data.ndim)
if(pdata_file is not None):
procs, data = bruker.read_pdata(pdata_file)
else: read_pdata = False
if remove_filter and not read_pdata:
if ng_version > 0.5:
data = bruker.remove_digital_filter(dic, data, True)
else:
data = bruker.remove_digital_filter(dic, data)
u = bruker.guess_udic(dic, data)
u["original_format"] = 'Bruker'
u["Name"] = get_name(file)
if(read_pdata):
for i in range(0, data.ndim):
u[i]['complex'] = False
u[i]['freq'] = True
u[i]['time'] = False
uc = [uc_from_udic(u, dim) for dim in range(0, data.ndim)]
if read_pdata and 'procs' in procs.keys():
proc_names = ['procs', 'proc2s']
for i, uc_i in enumerate(uc[::-1]):
if procs[proc_names[i] ] and procs[proc_names[i] ]['OFFSET']:
uc_i._first = procs[proc_names[i] ]['OFFSET']
return NMRSpectrum(data, udic=u, uc=uc)
def setUp(self):
dic, data = read("./test_files/Bruker_1D/", read_pulseprogram=False)
self.dic = dic
self.data = data
self.filename = "./test_files/Bruker_1D/"