def compile_radex(fcompiler='gfortran', f77exec=None):
#r1 = os.system('f2py -h pyradex/radex/radex.pyf Radex/src/*.f --overwrite-signature > radex_build.log')
pwd = os.getcwd()
os.chdir('Radex/src/')
files = glob.glob('*.f')
include_path = '--include-paths {0}'.format(os.getcwd())
f2py.run_main(' -h radex.pyf --overwrite-signature'.split() +
include_path.split() + files)
if f77exec is None:
f77exec = ''
else:
f77exec = '--f77exec=%s' % f77exec
#cmd = '-m radex -c %s --fcompiler=%s %s' % (" ".join(files), fcompiler, f77exec)
#f2py.run_main(['-m','radex','-c','--fcompiler={0}'.format(fcompiler), f77exec,] + files)
source_list = []
for fn in files:
with open(fn, 'rb') as f:
source_list.append(f.read())
source = b"\n".join(source_list)
include_path = '-I{0}'.format(os.getcwd())
r2 = f2py.compile(
source=source,
modulename='radex',
extra_args='--fcompiler={0} {1} {2}'.format(fcompiler, f77exec,
include_path),
)
os.chdir(pwd)
if r2 != 0:
raise SystemError("f2py failed with error %i" % r2)
r3 = shutil.move('Radex/src/radex.so', 'pyradex/radex/radex.so')
def compile_radex(fcompiler="gfortran", f77exec=None):
# r1 = os.system('f2py -h pyradex/radex/radex.pyf Radex/src/*.f --overwrite-signature > radex_build.log')
pwd = os.getcwd()
os.chdir("Radex/src/")
files = glob.glob("*.f")
include_path = "--include-paths {0}".format(os.getcwd())
f2py.run_main(" -h radex.pyf --overwrite-signature".split() + include_path.split() + files)
if f77exec is None:
f77exec = ""
else:
f77exec = "--f77exec=%s" % f77exec
# cmd = '-m radex -c %s --fcompiler=%s %s' % (" ".join(files), fcompiler, f77exec)
# f2py.run_main(['-m','radex','-c','--fcompiler={0}'.format(fcompiler), f77exec,] + files)
source_list = []
for fn in files:
with open(fn, "rb") as f:
source_list.append(f.read())
source = b"\n".join(source_list)
include_path = "-I{0}".format(os.getcwd())
r2 = f2py.compile(
source=source, modulename="radex", extra_args="--fcompiler={0} {1} {2}".format(fcompiler, f77exec, include_path)
)
os.chdir(pwd)
if r2 != 0:
raise SystemError("f2py failed with error %i" % r2)
r3 = shutil.move("Radex/src/radex.so", "pyradex/radex/radex.so")
def compile_radex(fcompiler='gfortran',f77exec=None):
#r1 = os.system('f2py -h pyradex/radex/radex.pyf Radex/src/*.f --overwrite-signature > radex_build.log')
pwd = os.getcwd()
os.chdir('Radex/src/')
files = glob.glob('*.f')
include_path = '--include-paths {0}'.format(os.getcwd())
f2py.run_main(' -h radex.pyf --overwrite-signature'.split()+include_path.split()+files)
if f77exec is None:
f77exec=''
else:
f77exec = '--f77exec=%s' % f77exec
#cmd = '-m radex -c %s --fcompiler=%s %s' % (" ".join(files), fcompiler, f77exec)
#f2py.run_main(['-m','radex','-c','--fcompiler={0}'.format(fcompiler), f77exec,] + files)
source_list = []
for fn in files:
with open(fn, 'rb') as f:
source_list.append(f.read())
source = b"\n".join(source_list)
include_path = '-I{0}'.format(os.getcwd())
r2 = f2py.compile(source=source, modulename='radex',
extra_args='--fcompiler={0} {1} {2}'.format(fcompiler,
f77exec,
include_path),)
os.chdir(pwd)
if r2 != 0:
raise SystemError("f2py failed with error %i" % r2)
outfile = glob.glob("Radex/src/radex.*so")
if len(outfile) != 1:
print("outfile = {0}".format(outfile))
raise OSError("Did not find the correct .so file(s)! Compilation has failed.")
sofile = outfile[0]
r3 = shutil.move(sofile, 'pyradex/radex/radex.so')
def f2py_sources(self, sources, extension):
new_sources = []
f2py_sources = []
f_sources = []
f2py_targets = {}
target_dirs = []
ext_name = extension.name.split('.')[-1]
skip_f2py = 0
for source in sources:
(base, ext) = os.path.splitext(source)
if ext == '.pyf': # F2PY interface file
if self.inplace:
target_dir = os.path.dirname(base)
else:
target_dir = appendpath(self.build_src, os.path.dirname(base))
if os.path.isfile(source):
name = get_f2py_modulename(source)
if name != ext_name:
raise DistutilsSetupError('mismatch of extension names: %s '
'provides %r but expected %r' % (
source, name, ext_name))
target_file = os.path.join(target_dir,name+'module.c')
else:
log.debug(' source %s does not exist: skipping f2py\'ing.' \
% (source))
name = ext_name
skip_f2py = 1
target_file = os.path.join(target_dir,name+'module.c')
if not os.path.isfile(target_file):
log.warn(' target %s does not exist:\n '\
'Assuming %smodule.c was generated with '\
'"build_src --inplace" command.' \
% (target_file, name))
target_dir = os.path.dirname(base)
target_file = os.path.join(target_dir,name+'module.c')
if not os.path.isfile(target_file):
raise DistutilsSetupError("%r missing" % (target_file,))
log.info(' Yes! Using %r as up-to-date target.' \
% (target_file))
target_dirs.append(target_dir)
f2py_sources.append(source)
f2py_targets[source] = target_file
new_sources.append(target_file)
elif fortran_ext_match(ext):
f_sources.append(source)
else:
new_sources.append(source)
if not (f2py_sources or f_sources):
return new_sources
map(self.mkpath, target_dirs)
f2py_options = extension.f2py_options + self.f2py_opts
if self.distribution.libraries:
for name,build_info in self.distribution.libraries:
if name in extension.libraries:
f2py_options.extend(build_info.get('f2py_options',[]))
log.info("f2py options: %s" % (f2py_options))
if f2py_sources:
if len(f2py_sources) != 1:
raise DistutilsSetupError(
'only one .pyf file is allowed per extension module but got'\
' more: %r' % (f2py_sources,))
source = f2py_sources[0]
target_file = f2py_targets[source]
target_dir = os.path.dirname(target_file) or '.'
depends = [source] + extension.depends
if (self.force or newer_group(depends, target_file,'newer')) \
and not skip_f2py:
log.info("f2py: %s" % (source))
import numpy.f2py as f2py2e
f2py2e.run_main(f2py_options + ['--build-dir',target_dir,source])
else:
log.debug(" skipping '%s' f2py interface (up-to-date)" % (source))
else:
#XXX TODO: --inplace support for sdist command
if is_sequence(extension):
name = extension[0]
else: name = extension.name
target_dir = os.path.join(*([self.build_src]\
+name.split('.')[:-1]))
target_file = os.path.join(target_dir,ext_name + 'module.c')
new_sources.append(target_file)
depends = f_sources + extension.depends
if (self.force or newer_group(depends, target_file, 'newer')) \
and not skip_f2py:
import numpy.f2py as f2py2e
log.info("f2py:> %s" % (target_file))
self.mkpath(target_dir)
f2py2e.run_main(f2py_options + ['--lower',
'--build-dir',target_dir]+\
['-m',ext_name]+f_sources)
else:
log.debug(" skipping f2py fortran files for '%s' (up-to-date)"\
% (target_file))
if not os.path.isfile(target_file):
raise DistutilsError("f2py target file %r not generated" % (target_file,))
target_c = os.path.join(self.build_src,'fortranobject.c')
target_h = os.path.join(self.build_src,'fortranobject.h')
log.info(" adding '%s' to sources." % (target_c))
new_sources.append(target_c)
if self.build_src not in extension.include_dirs:
log.info(" adding '%s' to include_dirs." \
% (self.build_src))
extension.include_dirs.append(self.build_src)
if not skip_f2py:
import numpy.f2py as f2py2e
d = os.path.dirname(f2py2e.__file__)
source_c = os.path.join(d,'src','fortranobject.c')
source_h = os.path.join(d,'src','fortranobject.h')
if newer(source_c,target_c) or newer(source_h,target_h):
self.mkpath(os.path.dirname(target_c))
self.copy_file(source_c,target_c)
self.copy_file(source_h,target_h)
else:
if not os.path.isfile(target_c):
raise DistutilsSetupError("f2py target_c file %r not found" % (target_c,))
if not os.path.isfile(target_h):
raise DistutilsSetupError("f2py target_h file %r not found" % (target_h,))
for name_ext in ['-f2pywrappers.f','-f2pywrappers2.f90']:
filename = os.path.join(target_dir,ext_name + name_ext)
if os.path.isfile(filename):
log.info(" adding '%s' to sources." % (filename))
f_sources.append(filename)
return new_sources + f_sources
def f2py_sources(self, sources, extension):
new_sources = []
f2py_sources = []
f_sources = []
f2py_targets = {}
target_dirs = []
ext_name = extension.name.split('.')[-1]
skip_f2py = 0
for source in sources:
(base, ext) = os.path.splitext(source)
if ext == '.pyf': # F2PY interface file
if self.inplace:
target_dir = os.path.dirname(base)
else:
target_dir = appendpath(self.build_src,
os.path.dirname(base))
if os.path.isfile(source):
name = get_f2py_modulename(source)
if name != ext_name:
raise DistutilsSetupError(
'mismatch of extension names: %s '
'provides %r but expected %r' %
(source, name, ext_name))
target_file = os.path.join(target_dir, name + 'module.c')
else:
log.debug(' source %s does not exist: skipping f2py\'ing.' \
% (source))
name = ext_name
skip_f2py = 1
target_file = os.path.join(target_dir, name + 'module.c')
if not os.path.isfile(target_file):
log.warn(' target %s does not exist:\n '\
'Assuming %smodule.c was generated with '\
'"build_src --inplace" command.' \
% (target_file, name))
target_dir = os.path.dirname(base)
target_file = os.path.join(target_dir,
name + 'module.c')
if not os.path.isfile(target_file):
raise DistutilsSetupError("%r missing" %
(target_file, ))
log.info(' Yes! Using %r as up-to-date target.' \
% (target_file))
target_dirs.append(target_dir)
f2py_sources.append(source)
f2py_targets[source] = target_file
new_sources.append(target_file)
elif fortran_ext_match(ext):
f_sources.append(source)
else:
new_sources.append(source)
if not (f2py_sources or f_sources):
return new_sources
map(self.mkpath, target_dirs)
f2py_options = extension.f2py_options + self.f2py_opts
if self.distribution.libraries:
for name, build_info in self.distribution.libraries:
if name in extension.libraries:
f2py_options.extend(build_info.get('f2py_options', []))
log.info("f2py options: %s" % (f2py_options))
if f2py_sources:
if len(f2py_sources) != 1:
raise DistutilsSetupError(
'only one .pyf file is allowed per extension module but got'\
' more: %r' % (f2py_sources,))
source = f2py_sources[0]
target_file = f2py_targets[source]
target_dir = os.path.dirname(target_file) or '.'
depends = [source] + extension.depends
if (self.force or newer_group(depends, target_file,'newer')) \
and not skip_f2py:
log.info("f2py: %s" % (source))
import numpy.f2py as f2py2e
f2py2e.run_main(f2py_options +
['--build-dir', target_dir, source])
else:
log.debug(" skipping '%s' f2py interface (up-to-date)" %
(source))
else:
#XXX TODO: --inplace support for sdist command
if is_sequence(extension):
name = extension[0]
else:
name = extension.name
target_dir = os.path.join(*([self.build_src]\
+name.split('.')[:-1]))
target_file = os.path.join(target_dir, ext_name + 'module.c')
new_sources.append(target_file)
depends = f_sources + extension.depends
if (self.force or newer_group(depends, target_file, 'newer')) \
and not skip_f2py:
import numpy.f2py as f2py2e
log.info("f2py:> %s" % (target_file))
self.mkpath(target_dir)
f2py2e.run_main(f2py_options + ['--lower',
'--build-dir',target_dir]+\
['-m',ext_name]+f_sources)
else:
log.debug(" skipping f2py fortran files for '%s' (up-to-date)"\
% (target_file))
if not os.path.isfile(target_file):
raise DistutilsError("f2py target file %r not generated" %
(target_file, ))
target_c = os.path.join(self.build_src, 'fortranobject.c')
target_h = os.path.join(self.build_src, 'fortranobject.h')
log.info(" adding '%s' to sources." % (target_c))
new_sources.append(target_c)
if self.build_src not in extension.include_dirs:
log.info(" adding '%s' to include_dirs." \
% (self.build_src))
extension.include_dirs.append(self.build_src)
if not skip_f2py:
import numpy.f2py as f2py2e
d = os.path.dirname(f2py2e.__file__)
source_c = os.path.join(d, 'src', 'fortranobject.c')
source_h = os.path.join(d, 'src', 'fortranobject.h')
if newer(source_c, target_c) or newer(source_h, target_h):
self.mkpath(os.path.dirname(target_c))
self.copy_file(source_c, target_c)
self.copy_file(source_h, target_h)
else:
if not os.path.isfile(target_c):
raise DistutilsSetupError("f2py target_c file %r not found" %
(target_c, ))
if not os.path.isfile(target_h):
raise DistutilsSetupError("f2py target_h file %r not found" %
(target_h, ))
for name_ext in ['-f2pywrappers.f', '-f2pywrappers2.f90']:
filename = os.path.join(target_dir, ext_name + name_ext)
if os.path.isfile(filename):
log.info(" adding '%s' to sources." % (filename))
f_sources.append(filename)
return new_sources + f_sources