def pythia_sim(cmd_file, part_name="unnamed", make_plots=False):
# The main simulation. Takes a cmd_file as input. part_name
# is the name of the particle we're simulating decays from.
# Only necessary for titling graphs.
# Returns an array of 2D histograms, mapping eta, phi, with transverse
# energy.
pythia = Pythia(cmd_file, random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
unclustered_particles = []
a = 0
part_tensor = []
for event in pythia(events=num_events):
jets_particle_eta = []
jets_particle_phi = []
jets_particle_energy = []
vectors = event.all(selection)
sequence = cluster(vectors, R=1.0, p=-1, ep=True)
jets = sequence.inclusive_jets()
unclustered_particles.append(sequence.unclustered_particles())
part_data = []
num_b_jets = 0
for i, jet in enumerate(jets):
if np.abs(jet.userinfo[pid]) == 5: num_b_jets += 1
data = np.array((jet.mass, jet.eta, jet.phi, jet.pt))
if is_massless_or_isolated(jet): discarded_data.append(jet)
else: part_data.extend(data)
# Calculate total number of b and non-b jets in the event
# Histogram the particle data
part_data = np.array(part_data)
hist_array = hist_jet_vals(part_data) # is y-axis jet num or event num
return np.array(part_tensor)
def generator(cut=0.0):
params = {
"Beams:idA": "11",
"Beams:idB": "-11",
"Beams:eCM": 91.1876,
"WeakSingleBoson:ffbar2gmZ": "on",
"23:onMode": "off",
"23:onIfAny": "1 2 3 4 5",
"PDF:lepton": "off"
}
pythia = Pythia(params=params) #, random_state=1)
# Consider only final-state particles
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
# Array of pseudo-jets or particles to cluster
particles = []
array = []
# Begin event loop. Generate events
for event in pythia(events=1):
array = event.all(selection)
#For testing: filter out particles by energy
particles = array[array["E"] > cut]
return particles
def pythia_sim(cmd_file, part_name="", make_plots=False):
# The main simulation. Takes a cmd_file as input. part_name
# is the name of the particle we're simulating decays from.
# Only necessary for titling graphs.
# Returns an array of 2D histograms, mapping eta, phi, with transverse
# energy.
if part_name == "":
for char in cmd_file:
if char == ".":
break
else:
part_name += char
pythia = Pythia(cmd_file, random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
unclustered_particles = []
part_tensor = []
a = 0
for event in pythia(events=num_events):
jets_particle_eta = []
jets_particle_phi = []
jets_particle_energy = []
vectors = event.all(selection)
sequence = cluster(vectors, R=1.0, p=-1, ep=True)
jets = sequence.inclusive_jets()
unclustered_particles.append(sequence.unclustered_particles())
part_data = []
for i, jet in enumerate(jets):
part_data = return_particle_data(jet)
if is_massless_or_isolated(jet):
discarded_data.append(jet)
else:
jets_particle_eta.extend(part_data[0])
jets_particle_phi.extend(part_data[1])
jets_particle_energy.extend(part_data[2])
plt.figure()
part_tensor.append(
plt.hist2d(jets_particle_eta,
jets_particle_phi,
weights=jets_particle_energy,
density=True,
range=[(-5, 5), (-1 * np.pi, np.pi)],
bins=(20, 32),
cmap='binary')[0]) # We're only taking the
if not make_plots:
plt.close(
) # Zeroth element, which is the raw data of the 2D Histogram
if make_plots:
plt.xlabel("$\eta$")
plt.ylabel("$\phi$")
plt.title("Particles from " + part_name)
cbar = plt.colorbar()
cbar.set_label('Tranverse Energy of Each Particle ($GeV$)')
plt.savefig("hists/Jets_Particles_" + part_name + str(a) + ".png")
plt.close()
a += 1
return np.array(part_tensor)
def pythia_sim(cmd_file, part_name="unnamed", make_plots=False):
# The main simulation. Takes a cmd_file as input. part_name
# is the name of the particle we're simulating decays from.
# Only necessary for titling graphs.
# Returns an array of 2D histograms, mapping eta, phi, with transverse
# energy.
pythia = Pythia(cmd_file, random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
unclustered_particles = []
a = 0
part_tensor = []
sj_data_per_event = []
for event in pythia(events=num_events):
lead_jet_invalid = False
sub_jet_data = [] # There are multiple jets in each event
jets_particle_eta = []
jets_particle_phi = []
jets_particle_energy = []
vectors = event.all(selection)
sequence = cluster(vectors, R=1.0, p=-1, ep=True)
jets = sequence.inclusive_jets()
unclustered_particles.append(sequence.unclustered_particles())
part_data = []
for i, jet in enumerate(jets):
jet_data = (
jet.mass, jet.eta, jet.phi, jet.pt,
len(jet.constituents_array()), 2*jet.mass/jet.pt
)
part_data = return_particle_data(jet)
if is_massless_or_isolated(jet):
discarded_data.append(jet)
if i == 0: lead_jet_invalid = True
else:
jets_particle_eta.extend(part_data[0])
jets_particle_phi.extend(part_data[1])
jets_particle_energy.extend(part_data[2])
if i < 3:
sub_jet_data.append(jet_data)
lead_jet_valid = not lead_jet_invalid
if lead_jet_valid:
sj_data_per_event.append(np.array(sub_jet_data))
plt.figure()
part_tensor.append(plt.hist2d(jets_particle_eta, jets_particle_phi,
weights=jets_particle_energy, normed=True,
range=[(-5,5),(-1*np.pi,np.pi)],
bins=(20,32), cmap='binary')[0]) # We're only taking the
plt.close() # Zeroth element, which is the raw data of the 2D Histogram
if make_plots:
plt.xlabel("$\eta$")
plt.ylabel("$\phi$")
plt.title("Particles from "+part_name)
cbar = plt.colorbar()
cbar.set_label('Tranverse Energy of Each Particle ($GeV$)')
plt.savefig("hists/Jets_Particles_"+part_name+str(a)+".png")
a += 1
return np.array(part_tensor), np.array(sj_data_per_event)
def pythia_sim(cmd_file):
# The main simulation. Takes a cmd_file as input.
pythia = Pythia(cmd_file, random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
unclustered_particles = []
for event in pythia(events=num_events):
vectors = event.all(selection)
sequence = cluster(vectors, R=0.4, p=-1, ep=True)
jets = sequence.inclusive_jets()
print(NoneType_statistics(jets, debug_data))
def test_first_example():
pythia = Pythia(get_cmnd('w'), random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX & (ABS_PDG_ID != 12) &
(ABS_PDG_ID != 14) & (ABS_PDG_ID != 16))
# generate events while writing to ascii hepmc
for event in hepmc_write('events.hepmc', pythia(events=1)):
array1 = event.all(selection)
# read the same event back from ascii hepmc
for event in hepmc_read('events.hepmc'):
array2 = event.all(selection)
assert_array_equal(array1, array2)
def get_group_events(name, num_events, seed, train):
# Generate group of Monte Carlo simulated proton-antiproton collision events
# at the LHC, composed by particle readings (px,py,pz,e,m).
# Input: name.cmnd config file for Pythia simulator.
# generate events while writing to ascii hepmc
momentum_four = ['px', 'py', 'pz', 'E'] #'mass', 'pdgid'
group_events = []
pythia = Pythia(os.path.join('./data/cfgs/', name + '.cmnd'),
random_state=seed)
for event in hepmc_write('events.hepmc', pythia(events=num_events)):
particles = event.all()
if train == True:
# If training, then return only background signals, not Higgs reading.
particles = particles[particles['pdgid'] != 25]
# Filter and transform np structured array to ndarray
X = particles[momentum_four].copy()
particles = X.view(np.float64).reshape(X.shape + (-1, ))
group_events.append(particles)
return group_events
def pythia_sim(cmd_file, part_name="", make_plots=False):
# The main simulation. Takes a cmd_file as input. part_name
# is the name of the particle we're simulating decays from.
# Only necessary for titling graphs.
# Returns an array of 2D histograms, mapping eta, phi, with transverse
# energy.
debug_data = [
] # Deprecated but costs 1 operation per function call so negligble
event_data = [] # Event data -> the leading jet(s) information
sub_jet_data = [] # Continer for the multiple jets in each event
discarded_data = [
] # For analyzing what is thrown out from function is_massless_or_isolated
unclustered_particles = []
pythia = Pythia(cmd_file, random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
for event in pythia(events=num_events):
jetpts = []
vectors = event.all(selection)
sequence = cluster(vectors, R=0.4, p=-1,
ep=True) # R is radius of jets.
jets = sequence.inclusive_jets()
unclustered_particles.append(sequence.unclustered_particles())
for i, jet in enumerate(jets):
data = (jet.mass, jet.eta, jet.phi, jet.pt,
len(jet.constituents_array()), 2 * jet.mass / jet.pt)
if data[5] > 0.4:
debug_data.append((jet, data))
if is_massless_or_isolated(jet):
discarded_data.append(jet)
else:
if i < top_i_jets: # Todo: Append the leading 3 jets of the event
event_data.append(data)
sub_jet_data.append(data)
if make_plots:
event_data = np.array(event_data)
sub_jet_data = np.array(sub_jet_data)
make_the_plots(event_data, sub_jet_data, part_name)
event_data = np.array(event_data)
sub_jet_data = np.array(sub_jet_data)
return event_data, sub_jet_data
def pythia_sim(cmd_file, part_name=""):
# The main simulation. Takes a cmd_file as input. part_name
# is the name of the particle we're simulating decays from.
# Only necessary for titling graphs.
# Returns an array of 2D histograms, mapping eta, phi, with transverse
# energy.
pythia = Pythia(cmd_file, random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
unclustered_particles = []
debug_data = [
] # Deprecated but costs 1 operation per function call so negligble
discarded_data = [
] # For analyzing what gets thrown out from function is_massless_or_isolated
sj_data_per_event = [] # sub jet data indexed into each event
for event in pythia(events=num_events):
lead_jet_invalid = False
sub_jet_data = [] # There are multiple jets in each event
vectors = event.all(selection)
sequence = cluster(
vectors, R=0.4, p=-1,
ep=True) # Note to self: R might need to be changed to 1
jets = sequence.inclusive_jets()
unclustered_particles.append(sequence.unclustered_particles())
for i, jet in enumerate(jets):
data = (jet.mass, jet.eta, jet.phi, jet.pt,
len(jet.constituents_array()), 2 * jet.mass / jet.pt)
if data[5] > 0.4:
debug_data.append((jet, data))
if is_massless_or_isolated(jet):
discarded_data.append(jet)
if i == 0: lead_jet_invalid = True
if i < 3:
sub_jet_data.append(data)
if not lead_jet_invalid:
sj_data_per_event.append(np.array(sub_jet_data))
sj_data_per_event = np.array(sj_data_per_event)
return sj_data_per_event
def generate_events(config_path, nevents):
'''
Arguments:
----------
config_path:
nevents:
Returns:
--------
events_particles:
events_weights:
'''
pythia = Pythia(config_path, verbosity=1)
variations = pythia.weight_labels
if variations == ['']:
variations = ['Baseline'] # to match hard-coded decision in Pythia
# only consider final state particles that are not neutrinos
selection = ((STATUS == 1) & ~HAS_END_VERTEX & # final state
(ABS_PDG_ID != 12) & (ABS_PDG_ID != 14) & (ABS_PDG_ID != 16)
) # not a neutrino
# placeholders for particles and weights
events_particles = []
events_weights = []
# generate events from pythia
for event in pythia(events=nevents):
events_weights.append(event.weights.astype('float32'))
events_particles.append(event.all(selection))
# convert to numpy arrays for usability
events_weights = np.array(events_weights)
# defaults to 'f0' if no variations are specified!!
events_weights = events_weights.view(dtype=[(n, 'float32')
for n in variations])
events_particles = np.array(events_particles)
return events_particles, events_weights
def pythia_sim(cmd_file, part_name=""):
# The main simulation. Takes a cmd_file as input. part_name
# is the name of the particle we're simulating decays from.
# Only necessary for titling graphs.
# Returns an array of 2D histograms, mapping eta, phi, with transverse
# energy.
pythia = Pythia(cmd_file, random_state=1)
if part_name == "higgsWW":
events_data_package = event_hists("ff2HffTww")
higgs_data_package = higgs_hists("higgsww")
else:
events_data_package = event_hists("ff2HffTzz")
higgs_data_package = higgs_hists("higgszz")
bquarksAtEvent = []
bjetsAtEvent = []
otherJetsAtEvent = []
for event in pythia(events=num_events):
bjets = []
bquarks = []
otherjets = []
final_state_selection = ((STATUS == 1) & ~HAS_END_VERTEX &
(ABS_PDG_ID != 12) & (ABS_PDG_ID != 14) &
(ABS_PDG_ID != 16))
particles = event.all(return_hepmc=True)
for particle in particles:
update(bquarks, higgs_data_package, particle)
jet_inputs = event.all(final_state_selection)
jet_sequence = cluster(jet_inputs, ep=True, R=0.4, p=-1)
jets = jet_sequence.inclusive_jets(ptmin=20)
for jet in jets:
update_if_bjet(jet, bquarks, events_data_package, bjets, otherjets)
bquarksAtEvent.append(bquarks)
bjetsAtEvent.append(bjets)
otherJetsAtEvent.append(otherjets)
higgs_data_package.save_1d_hists()
higgs_dat.append(higgs_data_package)
return events_data_package, bquarksAtEvent, bjetsAtEvent, otherJetsAtEvent
# ----------------------------------------------------------------------
# Import Statements
# ----------------------------------------------------------------------
import numpy as np
import matplotlib
import pandas as pd
matplotlib.use("Agg")
import matplotlib.pyplot as plt
from numpythia import Pythia, hepmc_write, hepmc_read
from numpythia import STATUS, HAS_END_VERTEX, ABS_PDG_ID
from numpythia.testcmnd import get_cmnd
from numpy.testing import assert_array_equal
# ----------------------------------------------------------------------
# Constant Definitions
# ----------------------------------------------------------------------
pythia = Pythia(get_cmnd('w'), random_state=1)
pdg_to_part = {
1 : 'd',
2 : 'u',
3 : 's',
4 : 'c',
5 : 'b',
6 : 't',
7 : 'b\'',
8 : 't\'',
11 : 'e^-',
12 : 'v_e',
13 : 'mu^-',
14 : 'v_mu',
15 : 't^-',
16 : 'v_t',
help="The random seed to initialize with")
parser.add_argument('--nevent',
type=int,
default=10,
help="The number of events to generate")
parser.add_argument('--out', help="The output npy file")
args = parser.parse_args()
try:
os.makedirs(os.path.dirname(args.out))
except OSError as e:
import errno
if e.errno != errno.EEXIST:
raise
pythia = Pythia(args.config, random_state=args.seed)
# for some stupid reason there has to be at least two terms for
# this selection thing to work.
sel = (STATUS == 1) & ~HAS_END_VERTEX & (ABS_PDG_ID != 12) & (
ABS_PDG_ID != 14) & (ABS_PDG_ID != 16)
dtype = [('ntrk1', int), ('ntrk2', int)] + [('wt_%s' % l, float)
for l in pythia.weight_labels]
results = []
for ievt, event in enumerate(pythia(events=args.nevent)):
if ievt % 100 == 0:
print("Processing event %d/%d" % (ievt, args.nevent))
weights = list(event.weights)
from numpythia import Pythia, ABS_PDG_ID
#selection = ( (ABS_PDG_ID == 310) )
params = {"softQCD:all": "on", "Beams:eCM": 13000}
# dtype=[('E', '<f8'), ('px', '<f8'), ('py', '<f8'), ('pz', '<f8'), ('mass', '<f8'), ('prodx', '<f8'), ('prody', '<f8'), ('prodz', '<f8'), ('prodt', '<f8'), ('pdgid', '<i4'), ('status', '<i4')])
i = 0
out = []
for event in Pythia(params=params):
ks0s = filter(lambda x: x[-2] == 310, event.all())
if len(ks0s):
out.extend(ks0s)
i += 1
if i == 100: break
## ASSUME KS0S COME FROM X,Y,Z = 0, 0, 0
## DECAY THEM FOLLOWING PROPER LIFETIME EXPONENTIAL DECAY:
## TAKE KS0 LIFETIME. WITH EXPONENTIAL DISTRIBUTION, DETERMINE (RANDOM) LIFETIME (EXPLORE TRandom3 in ROOT) TRandom3().Expo(life)
## CALCULATE DECAY POINT (USE BOOST)
## ALEXANDRE
## plot fraction in theta<400, z decay<500 mm for 8,13,14,27 TeV for k+, ks, sigma, lambda
## ADRIAN
## DECAY THEM WITH ROOT TGenPhaseSpace (setDecay to pipiee)
## THEN SMEAR MOMENTUM OF PIONS ACCORDING TO LHCB RESOLUTION, USE 1% FOR PIONS AND 5% FOR ELECTRONS. USE TRandom3().Gauss(momento_true,reso)
## COMPUTE KS0 MASS IN BOTH CASES. (RECO WITH STANDARD MASS, AFTER USING 'TRICK')
matplotlib.use("Agg")
import matplotlib.pyplot as plt
import numpy as np
from pyjet import cluster
def print_debug_data(dd):
for tup in dd:
j = tup[1]
print("Mass = ", j[0], "\tpT = ", j[3], "\tEffR = ", j[5])
# -----------------------------------------------------------------------
# Generate Events
# -----------------------------------------------------------------------
pythia = Pythia('zz.cmnd', random_state=1)
selection = ((STATUS == 1) & ~HAS_END_VERTEX)
unclustered_particles = list()
# -----------------------------------------------------------------------
# Generate Jets and Histogram Data
# -----------------------------------------------------------------------
def is_massless_or_isolated(jet):
# Returns true if a jet has nconsts = 1 and has a pdgid equal to that
# of a photon or a gluon
if len(jet.constituents_array()) == 1:
if np.abs(jet.info['pdgid']) == 21 or np.abs(jet.info['pdgid']) == 22:
return True
# if a muon is outside of the radius of the jet, discard it
if np.abs(jet.info['pdgid']) == 13:
mjj = array('f', [0])
ystarjj = array('f', [0])
t.Branch('ptj1', ptj1, 'ptj1/F')
t.Branch('etaj1', etaj1, 'etaj1/F')
t.Branch('phij1', phij1, 'phij1/F')
t.Branch('ej1', ej1, 'ej1/F')
t.Branch('ptj2', ptj2, 'ptj2/F')
t.Branch('etaj2', etaj2, 'etaj2/F')
t.Branch('phij2', phij2, 'phij2/F')
t.Branch('ej2', ej2, 'ej2/F')
t.Branch('mjj', mjj, 'mjj/F')
t.Branch('ystarjj', ystarjj, 'ystarjj/F')
# generate events
pythia = Pythia(config=runtype + '.cmd')
events = pythia(events=nevents)
#print(type(events))
# loop over events
for e in events:
# get the event record
allparts = e.all(return_hepmc=True)
# get the two outgoing partons
j1 = ROOT.TLorentzVector()
j2 = ROOT.TLorentzVector()
count = 0